Wall clock time and date at job start Wed Apr 1 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47383 * 2 1 4 4 F 1.39899 * 109.46638 * 240.00592 * 2 1 3 5 5 C 1.52994 * 109.47172 * 120.00635 * 2 1 3 6 6 C 1.53001 * 109.46979 * 184.99577 * 5 2 1 7 7 N 1.46902 * 109.47335 * 183.95647 * 6 5 2 8 8 C 1.45959 * 110.99910 * 299.81639 * 7 6 5 9 9 C 1.51885 * 110.01430 * 223.27290 * 8 7 6 10 10 C 1.52238 * 111.93390 * 293.25235 * 9 8 7 11 11 H 1.08998 * 111.02789 * 180.83694 * 10 9 8 12 12 C 1.54213 * 106.76080 * 301.98626 * 10 9 8 13 13 C 1.53798 * 105.48040 * 107.37802 * 12 10 9 14 14 C 1.52538 * 104.47133 * 351.54361 * 13 12 10 15 15 H 1.08997 * 106.51515 * 138.83780 * 14 13 12 16 16 C 1.49537 * 110.99939 * 66.46320 * 7 6 5 17 17 N 1.47294 * 108.81088 * 23.79609 * 14 13 12 18 18 C 1.34776 * 127.72094 * 150.69591 * 17 14 13 19 19 O 1.21279 * 120.00031 * 359.70679 * 18 17 14 20 20 C 1.50698 * 120.00122 * 179.70706 * 18 17 14 21 21 S 1.81008 * 109.47294 * 179.97438 * 20 18 17 22 22 C 1.76195 * 99.99917 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00601 * 359.97438 * 22 21 20 24 24 C 1.38802 * 119.99654 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00379 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99901 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46699 * 269.99569 * 26 24 22 28 28 H 1.48501 * 109.47144 * 29.99433 * 26 24 22 29 29 H 1.48497 * 109.47118 * 149.99584 * 26 24 22 30 30 H 1.09007 * 109.46648 * 299.99462 * 1 2 3 31 31 H 1.08996 * 109.47195 * 59.98876 * 1 2 3 32 32 H 1.08995 * 109.47383 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47429 * 65.00020 * 5 2 1 34 34 H 1.08998 * 109.47580 * 304.99733 * 5 2 1 35 35 H 1.09003 * 109.47198 * 63.95647 * 6 5 2 36 36 H 1.08996 * 109.47224 * 303.95184 * 6 5 2 37 37 H 1.08998 * 109.35667 * 343.31202 * 8 7 6 38 38 H 1.09001 * 109.36369 * 103.03817 * 8 7 6 39 39 H 1.09000 * 108.77960 * 172.70984 * 9 8 7 40 40 H 1.09009 * 109.07521 * 53.99161 * 9 8 7 41 41 H 1.09000 * 110.24439 * 226.38047 * 12 10 9 42 42 H 1.09000 * 110.24249 * 348.37551 * 12 10 9 43 43 H 1.08998 * 110.39794 * 111.13765 * 13 12 10 44 44 H 1.08999 * 110.40228 * 233.54804 * 13 12 10 45 45 H 1.09001 * 109.56439 * 55.18697 * 16 7 6 46 46 H 1.08998 * 109.66226 * 294.89399 * 16 7 6 47 47 H 1.08998 * 109.47277 * 60.00099 * 20 18 17 48 48 H 1.09000 * 109.47288 * 299.99728 * 20 18 17 49 49 H 0.97005 * 119.99842 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9962 -0.6594 -1.1424 5 6 2.0400 -0.7214 1.2491 6 6 3.5649 -0.6135 1.3135 7 7 4.0625 -1.3854 2.4600 8 6 3.5078 -0.8793 3.7116 9 6 4.5946 -0.8070 4.7702 10 6 5.0949 -2.1891 5.1668 11 1 5.8632 -2.1208 5.9370 12 6 3.8702 -2.9764 5.6752 13 6 3.5564 -4.0033 4.5742 14 6 4.4680 -3.6108 3.4158 15 1 4.8570 -4.5398 2.9992 16 6 3.8262 -2.8489 2.2638 17 7 5.6190 -2.8627 3.9497 18 6 6.8668 -2.7985 3.4445 19 8 7.1442 -3.4096 2.4343 20 6 7.9175 -1.9675 4.1348 21 16 9.4759 -2.0849 3.2215 22 6 10.4944 -1.0506 4.2202 23 1 10.0841 -0.5748 5.0987 24 6 11.8237 -0.8464 3.8773 25 7 12.3237 -1.4257 2.8063 26 14 12.9038 0.2496 4.9364 27 1 12.8209 1.6488 4.4460 28 1 12.4384 0.1905 6.3454 29 1 14.3108 -0.2191 4.8598 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7517 -1.7717 1.2054 34 1 1.6055 -0.2620 2.1369 35 1 3.8506 0.4322 1.4279 36 1 3.9963 -1.0095 0.3942 37 1 3.0976 0.1173 3.5482 38 1 2.7145 -1.5454 4.0509 39 1 4.1930 -0.3079 5.6520 40 1 5.4305 -0.2240 4.3834 41 1 4.1101 -3.4856 6.6086 42 1 3.0231 -2.3054 5.8177 43 1 3.7751 -5.0126 4.9226 44 1 2.5136 -3.9241 4.2668 45 1 4.2724 -3.1676 1.3218 46 1 2.7547 -3.0483 2.2462 47 1 8.0632 -2.3361 5.1501 48 1 7.5934 -0.9273 4.1689 49 1 11.7629 -1.9952 2.2565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670947243.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:18 Heat of formation + Delta-G solvation = -82.765401 kcal Electronic energy + Delta-G solvation = -29366.360020 eV Core-core repulsion = 25368.645299 eV Total energy + Delta-G solvation = -3997.714721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.89166 -40.84493 -38.08768 -36.76859 -33.69921 -33.24421 -32.46729 -31.87679 -29.88761 -28.78646 -26.86455 -26.39647 -24.78477 -23.76705 -22.32632 -21.93237 -21.28782 -19.58300 -18.75429 -18.10724 -17.07279 -16.99514 -16.21046 -15.91802 -15.75950 -15.42771 -14.95162 -14.62644 -14.51618 -14.04839 -13.99572 -13.88196 -13.78549 -13.50015 -13.46860 -13.17265 -12.74546 -12.68424 -12.48165 -12.41554 -12.32688 -12.19482 -11.79855 -11.68371 -11.60736 -11.42162 -11.28756 -11.05167 -11.01509 -10.87597 -10.83648 -10.73813 -10.47782 -10.15934 -9.50002 -9.32677 -8.95601 -8.39148 -8.28031 -8.13338 -6.58546 -6.56497 -3.92806 2.87556 3.20427 3.36172 3.42103 3.50319 3.59441 3.75129 4.14559 4.22560 4.29928 4.32291 4.35073 4.41797 4.54247 4.62460 4.75862 4.86254 4.87337 4.96228 5.03615 5.07586 5.14141 5.16644 5.19255 5.28081 5.30832 5.34082 5.42325 5.49067 5.53090 5.56104 5.57709 5.61541 5.70092 5.76933 5.79716 5.83155 5.89590 5.92596 5.95030 5.98254 6.08338 6.22013 6.55203 6.92880 7.05797 7.88427 7.98306 8.56084 8.69890 9.33422 10.87639 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.002893 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.069539 B = 9677.295674 C =10628.774757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.083 0.917 4 F -0.213 7.213 5 C -0.184 4.184 6 C 0.057 3.943 7 N -0.531 5.531 8 C 0.064 3.936 9 C -0.131 4.131 10 C 0.132 3.868 11 H 0.089 0.911 12 C -0.129 4.129 13 C -0.118 4.118 14 C 0.129 3.871 15 H 0.071 0.929 16 C 0.059 3.941 17 N -0.595 5.595 18 C 0.565 3.435 19 O -0.520 6.520 20 C -0.118 4.118 21 S -0.117 6.117 22 C -0.605 4.605 23 H 0.064 0.936 24 C 0.034 3.966 25 N -0.886 5.886 26 Si 1.086 2.914 27 H -0.284 1.284 28 H -0.287 1.287 29 H -0.280 1.280 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.261 1.472 3.880 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.054 3.946 3 H 0.101 0.899 4 F -0.194 7.194 5 C -0.224 4.224 6 C -0.071 4.071 7 N -0.254 5.254 8 C -0.064 4.064 9 C -0.170 4.170 10 C 0.028 3.972 11 H 0.107 0.893 12 C -0.167 4.167 13 C -0.157 4.157 14 C 0.024 3.976 15 H 0.089 0.911 16 C -0.069 4.069 17 N -0.330 5.330 18 C 0.354 3.646 19 O -0.395 6.395 20 C -0.269 4.269 21 S 0.109 5.891 22 C -0.753 4.753 23 H 0.083 0.917 24 C -0.176 4.176 25 N -0.520 5.520 26 Si 0.913 3.087 27 H -0.211 1.211 28 H -0.213 1.213 29 H -0.206 1.206 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.652 1.195 2.471 25.798 hybrid contribution -2.825 0.175 1.097 3.036 sum -28.477 1.369 3.568 28.732 Atomic orbital electron populations 1.22382 0.94554 1.03452 1.03330 1.21490 0.94532 0.96337 0.82262 0.89888 1.92833 1.90254 1.83358 1.52939 1.22971 0.99578 1.02078 0.97735 1.22284 0.90869 0.99079 0.94898 1.61848 1.59696 1.02489 1.01389 1.21676 0.95517 0.99204 0.89991 1.21779 0.99875 0.97236 0.98155 1.21763 0.95322 0.92297 0.87849 0.89319 1.22496 0.97608 0.97931 0.98676 1.22051 0.99207 0.99634 0.94768 1.21029 0.87492 0.95389 0.93662 0.91078 1.22833 0.97810 0.87220 0.99012 1.48522 1.08325 1.49643 1.26521 1.19648 0.80200 0.80799 0.83963 1.90686 1.79305 1.45033 1.24465 1.23239 0.98791 1.01799 1.03107 1.84808 1.00916 1.65509 1.37829 1.23719 0.99987 1.36313 1.15253 0.91724 1.26032 0.95330 0.98292 0.97946 1.70758 1.39451 1.28028 1.13802 0.83299 0.75622 0.75350 0.74444 1.21101 1.21347 1.20555 0.90831 0.91444 0.91548 0.90681 0.90250 0.90498 0.90091 0.91703 0.93633 0.91121 0.90810 0.90802 0.90268 0.90306 0.90611 0.89828 0.94001 0.89605 0.89169 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.65 37.16 0.36 -0.68 16 2 C 0.09 0.69 3.96 -26.73 -0.11 0.59 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 F -0.21 -2.36 16.70 2.25 0.04 -2.32 16 5 C -0.18 -1.39 4.49 -26.73 -0.12 -1.51 16 6 C 0.06 0.59 5.06 -3.82 -0.02 0.57 16 7 N -0.53 -6.18 4.00 -234.26 -0.94 -7.11 16 8 C 0.06 0.58 4.22 -4.90 -0.02 0.56 16 9 C -0.13 -1.32 5.08 -27.69 -0.14 -1.46 16 10 C 0.13 1.46 3.44 -66.49 -0.23 1.23 16 11 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 12 C -0.13 -1.02 5.89 -25.68 -0.15 -1.17 16 13 C -0.12 -0.99 6.18 -26.55 -0.16 -1.15 16 14 C 0.13 1.57 2.52 -68.09 -0.17 1.40 16 15 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 16 C 0.06 0.68 5.00 -2.71 -0.01 0.67 16 17 N -0.59 -8.80 2.15 -156.77 -0.34 -9.14 16 18 C 0.57 11.34 7.93 -10.99 -0.09 11.26 16 19 O -0.52 -12.48 16.19 5.56 0.09 -12.39 16 20 C -0.12 -2.55 5.31 36.00 0.19 -2.36 16 21 S -0.12 -3.26 19.60 -107.50 -2.11 -5.37 16 22 C -0.60 -17.80 9.50 30.94 0.29 -17.51 16 23 H 0.06 1.83 7.80 -52.48 -0.41 1.42 16 24 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 25 N -0.89 -28.09 13.67 55.49 0.76 -27.34 16 26 Si 1.09 25.43 29.92 -169.99 -5.09 20.34 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.61 6.51 -51.93 -0.34 0.27 16 34 H 0.08 0.49 6.94 -51.93 -0.36 0.13 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 37 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 38 H 0.05 0.36 5.58 -51.93 -0.29 0.07 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.95 7.71 -51.92 -0.40 0.55 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.50 6.59 -51.93 -0.34 0.15 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 45 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 46 H 0.04 0.38 6.29 -51.93 -0.33 0.06 16 47 H 0.09 1.74 8.01 -51.92 -0.42 1.32 16 48 H 0.09 1.86 7.71 -51.92 -0.40 1.46 16 49 H 0.28 9.03 7.13 -40.82 -0.29 8.74 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -36.05 388.78 -10.34 -46.40 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.15 Total: -0.29 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.47 Total: -8.64 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.52 Total: -43.59 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.11 Total: -5.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.05 -10.34 -46.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670947243.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.369 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds