Wall clock time and date at job start Wed Apr 1 2020 04:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48503 * 109.47239 * 270.00459 * 3 2 1 5 5 H 1.48501 * 109.47083 * 30.00228 * 3 2 1 6 6 H 1.48498 * 109.47143 * 150.00044 * 3 2 1 7 7 C 1.38810 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99906 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99931 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46674 * 65.00653 * 11 10 9 13 13 N 1.46499 * 109.47455 * 305.00710 * 11 10 9 14 14 C 1.34767 * 120.00218 * 124.80750 * 13 11 10 15 15 O 1.21561 * 120.00214 * 354.79195 * 14 13 11 16 16 C 1.47824 * 120.00215 * 174.78975 * 14 13 11 17 17 C 1.41584 * 120.36994 * 0.02562 * 16 14 13 18 18 C 1.34811 * 120.11161 * 179.97438 * 17 16 14 19 19 N 1.36057 * 120.83286 * 0.04158 * 18 17 16 20 20 N 1.40245 * 133.73534 * 179.97438 * 19 18 17 21 21 N 1.28964 * 107.02372 * 179.97438 * 20 19 18 22 22 N 1.28538 * 110.84544 * 359.97438 * 21 20 19 23 23 C 1.32615 * 110.18401 * 0.02562 * 22 21 20 24 24 C 1.38449 * 120.37603 * 180.02562 * 16 14 13 25 25 C 1.53003 * 109.47105 * 185.00170 * 11 10 9 26 26 C 1.54271 * 110.03091 * 301.75210 * 25 11 10 27 27 C 1.54890 * 104.19410 * 217.10588 * 26 25 11 28 28 C 1.54885 * 102.74889 * 37.94421 * 27 26 25 29 29 C 1.53876 * 110.02870 * 184.58845 * 25 11 10 30 30 H 0.97002 * 120.00386 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00000 * 359.97438 * 9 7 2 32 32 H 1.09010 * 109.46810 * 60.00160 * 10 9 7 33 33 H 1.09005 * 109.47552 * 300.00791 * 10 9 7 34 34 H 0.97005 * 119.99306 * 304.80772 * 13 11 10 35 35 H 1.08000 * 119.93781 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.58715 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.52274 * 359.97438 * 24 16 14 38 38 H 1.08988 * 110.01591 * 63.19620 * 25 11 10 39 39 H 1.08995 * 110.49063 * 335.78666 * 26 25 11 40 40 H 1.08998 * 110.48209 * 98.43043 * 26 25 11 41 41 H 1.08998 * 110.75716 * 279.62901 * 27 26 25 42 42 H 1.08996 * 110.91231 * 156.33093 * 27 26 25 43 43 H 1.09004 * 110.48939 * 203.37485 * 28 27 26 44 44 H 1.09002 * 110.59896 * 80.78816 * 28 27 26 45 45 H 1.08996 * 110.03057 * 238.56785 * 29 25 11 46 46 H 1.08996 * 110.03419 * 0.02562 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8949 -1.6975 0.9287 13 7 5.9509 -1.3234 -1.1343 14 6 6.6028 -0.1627 -0.9241 15 8 6.8295 0.2102 0.2105 16 6 7.0421 0.6569 -2.0731 17 6 6.7818 0.2304 -3.3978 18 6 7.1844 0.9822 -4.4419 19 7 7.8440 2.1555 -4.2431 20 7 8.3736 3.1279 -5.1037 21 7 8.8975 4.0436 -4.3620 22 7 8.7579 3.7587 -3.1164 23 6 8.1161 2.6063 -2.9797 24 6 7.7128 1.8503 -1.8660 25 6 6.3804 -3.5109 -0.1281 26 6 6.0040 -4.4522 1.0348 27 6 7.3296 -5.1734 1.3838 28 6 8.3843 -4.0523 1.2116 29 6 7.8938 -3.2565 -0.0156 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0425 -0.8909 33 1 3.8492 -3.0423 0.8891 34 1 5.7032 -1.5844 -2.0352 35 1 6.2598 -0.6989 -3.5721 36 1 6.9810 0.6489 -5.4489 37 1 7.9217 2.1954 -0.8642 38 1 6.1513 -3.9850 -1.0824 39 1 5.6454 -3.8784 1.8893 40 1 5.2510 -5.1721 0.7143 41 1 7.5187 -5.9917 0.6890 42 1 7.3161 -5.5365 2.4114 43 1 9.3684 -4.4803 1.0203 44 1 8.4123 -3.4133 2.0942 45 1 8.3993 -3.6081 -0.9150 46 1 8.0840 -2.1931 0.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671547953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:06 Heat of formation + Delta-G solvation = 120.285123 kcal Electronic energy + Delta-G solvation = -30299.951452 eV Core-core repulsion = 26227.810424 eV Total energy + Delta-G solvation = -4072.141028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.71987 -40.60687 -39.01446 -38.04829 -35.71246 -34.34844 -33.96320 -32.63349 -31.43155 -30.88627 -30.11785 -28.77463 -26.80042 -25.70614 -25.12526 -23.21414 -23.15580 -21.74284 -21.09482 -20.57255 -20.00099 -18.96326 -18.40634 -17.80180 -17.26430 -17.20280 -16.32714 -15.67206 -15.59495 -15.42357 -15.16342 -14.71433 -14.47664 -14.11126 -13.89078 -13.69254 -13.46693 -13.36641 -13.07993 -12.84735 -12.74784 -12.40260 -12.35747 -11.88999 -11.71382 -11.64034 -11.40036 -11.24230 -11.19425 -11.10232 -10.95167 -10.77022 -10.63026 -10.57822 -10.55722 -10.23412 -10.19062 -9.68584 -9.12811 -9.01487 -8.96560 -7.32904 -5.85196 -3.21184 -0.31863 0.00597 1.30770 1.72295 2.20423 2.67172 3.06822 3.29256 3.34731 3.38691 3.41373 3.67000 3.89221 4.14590 4.42313 4.44381 4.51700 4.52476 4.56121 4.60054 4.87236 5.01299 5.03586 5.20554 5.29661 5.32575 5.34351 5.36176 5.44886 5.49952 5.52678 5.57960 5.68060 5.69720 5.71885 5.82058 5.87417 5.89865 6.00850 6.09742 6.16301 6.23466 6.30731 6.42611 6.62007 7.27967 7.89945 7.94390 7.99693 8.33644 9.12636 9.85125 10.03899 11.32883 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.004459 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.858312 B = 6278.504865 C = 9246.639127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.873 3.127 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.147 3.853 11 C 0.132 3.868 12 H 0.106 0.894 13 N -0.700 5.700 14 C 0.559 3.441 15 O -0.517 6.517 16 C -0.066 4.066 17 C -0.111 4.111 18 C 0.108 3.892 19 N -0.294 5.294 20 N -0.109 5.109 21 N -0.009 5.009 22 N -0.313 5.313 23 C 0.238 3.762 24 C -0.025 4.025 25 C -0.096 4.096 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.401 0.599 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.182 0.818 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.444 -8.514 -6.146 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.703 3.297 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.019 3.981 11 C 0.028 3.972 12 H 0.124 0.876 13 N -0.350 5.350 14 C 0.343 3.657 15 O -0.393 6.393 16 C -0.078 4.078 17 C -0.135 4.135 18 C -0.019 4.019 19 N -0.075 5.075 20 N -0.092 5.092 21 N -0.001 5.001 22 N -0.173 5.173 23 C -0.016 4.016 24 C -0.049 4.049 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.163 4.163 29 C -0.157 4.157 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.237 0.763 35 H 0.191 0.809 36 H 0.206 0.794 37 H 0.199 0.801 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.058 -7.074 -6.168 21.243 hybrid contribution -0.206 0.405 -0.317 0.554 sum 18.851 -6.669 -6.485 21.021 Atomic orbital electron populations 1.69685 1.05058 1.25894 1.57242 1.24625 0.95138 0.97011 1.01850 0.86707 0.79832 0.85340 0.77776 1.21306 1.21482 1.19824 1.19025 0.80522 0.94677 1.43413 0.89117 1.42661 1.04012 1.02076 1.91162 1.21017 0.87528 0.89882 0.99631 1.21687 0.95814 0.89478 0.90206 0.87645 1.45765 1.57166 1.20472 1.11629 1.17730 0.78852 0.81285 0.87800 1.90856 1.55780 1.70094 1.22598 1.20438 0.97730 0.95202 0.94417 1.21248 1.00628 1.01524 0.90101 1.21576 0.94636 0.82914 1.02798 1.49034 1.34688 1.16526 1.07225 1.82803 1.18379 0.95834 1.12195 1.77883 1.09464 1.16195 0.96608 1.75261 1.20960 1.11220 1.09888 1.22754 0.98074 0.93687 0.87045 1.20817 0.94911 0.91240 0.97958 1.22092 0.94774 0.94899 0.99858 1.22408 0.97267 0.97852 0.97985 1.22489 0.95017 0.97518 1.01152 1.22354 0.98249 0.97258 0.98392 1.22185 0.94852 1.00649 0.97994 0.92977 0.80477 0.95186 0.93915 0.76322 0.80873 0.79373 0.80099 0.90510 0.90774 0.91092 0.91745 0.91672 0.92142 0.91604 0.92207 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.87 22.03 27.73 -169.99 -4.71 17.32 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.72 6.52 56.52 0.37 -6.35 16 7 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.54 5.24 -59.90 -0.31 -16.85 16 10 C 0.15 2.41 5.59 -4.04 -0.02 2.39 16 11 C 0.13 1.68 1.71 -67.93 -0.12 1.56 16 12 H 0.11 1.60 6.91 -51.93 -0.36 1.25 16 13 N -0.70 -7.84 3.98 -54.76 -0.22 -8.05 16 14 C 0.56 7.11 7.08 -12.34 -0.09 7.02 16 15 O -0.52 -8.45 15.68 5.31 0.08 -8.37 16 16 C -0.07 -0.68 5.90 -104.62 -0.62 -1.30 16 17 C -0.11 -0.77 9.48 -39.52 -0.37 -1.14 16 18 C 0.11 0.78 11.18 -16.89 -0.19 0.59 16 19 N -0.29 -3.33 3.94 -12.43 -0.05 -3.38 16 20 N -0.11 -1.46 13.98 60.35 0.84 -0.61 16 21 N -0.01 -0.13 13.35 60.35 0.81 0.68 16 22 N -0.31 -4.59 12.27 31.04 0.38 -4.20 16 23 C 0.24 3.01 8.02 -156.36 -1.25 1.75 16 24 C -0.03 -0.29 9.70 -38.65 -0.37 -0.66 16 25 C -0.10 -0.92 2.71 -89.50 -0.24 -1.16 16 26 C -0.12 -1.12 5.31 -25.07 -0.13 -1.25 16 27 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 28 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 29 C -0.12 -1.09 6.25 -25.61 -0.16 -1.25 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 8.11 5.18 -40.82 -0.21 7.90 16 32 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.04 0.72 7.15 -51.93 -0.37 0.35 16 34 H 0.40 3.32 6.92 -40.82 -0.28 3.04 16 35 H 0.17 0.60 6.48 -52.49 -0.34 0.26 16 36 H 0.19 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.18 1.97 7.67 -52.49 -0.40 1.57 16 38 H 0.08 0.65 8.14 -51.94 -0.42 0.22 16 39 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.71 6.88 -51.93 -0.36 0.36 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -35.44 377.79 -6.99 -42.43 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.11 Total: 5.71 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.17 Total: -2.51 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 2.22 Total: -60.27 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.44 -6.99 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671547953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.712 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds