Wall clock time and date at job start Wed Apr 1 2020 04:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48503 * 109.47239 * 270.00459 * 3 2 1 5 5 H 1.48501 * 109.47083 * 30.00228 * 3 2 1 6 6 H 1.48498 * 109.47143 * 150.00044 * 3 2 1 7 7 C 1.38810 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99906 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99931 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47210 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46674 * 65.00653 * 11 10 9 13 13 N 1.46499 * 109.47455 * 305.00710 * 11 10 9 14 14 C 1.34767 * 120.00218 * 124.80750 * 13 11 10 15 15 O 1.21561 * 120.00214 * 354.79195 * 14 13 11 16 16 C 1.47824 * 120.00215 * 174.78975 * 14 13 11 17 17 C 1.41584 * 120.36994 * 0.02562 * 16 14 13 18 18 C 1.34811 * 120.11161 * 179.97438 * 17 16 14 19 19 N 1.36057 * 120.83286 * 0.04158 * 18 17 16 20 20 N 1.40245 * 133.73534 * 179.97438 * 19 18 17 21 21 N 1.28964 * 107.02372 * 179.97438 * 20 19 18 22 22 N 1.28538 * 110.84544 * 359.97438 * 21 20 19 23 23 C 1.32615 * 110.18401 * 0.02562 * 22 21 20 24 24 C 1.38449 * 120.37603 * 180.02562 * 16 14 13 25 25 C 1.53003 * 109.47105 * 185.00170 * 11 10 9 26 26 C 1.54271 * 110.03091 * 301.75210 * 25 11 10 27 27 C 1.54890 * 104.19410 * 217.10588 * 26 25 11 28 28 C 1.54885 * 102.74889 * 37.94421 * 27 26 25 29 29 C 1.53876 * 110.02870 * 184.58845 * 25 11 10 30 30 H 0.97002 * 120.00386 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00000 * 359.97438 * 9 7 2 32 32 H 1.09010 * 109.46810 * 60.00160 * 10 9 7 33 33 H 1.09005 * 109.47552 * 300.00791 * 10 9 7 34 34 H 0.97005 * 119.99306 * 304.80772 * 13 11 10 35 35 H 1.08000 * 119.93781 * 359.97438 * 17 16 14 36 36 H 1.08004 * 119.58715 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.52274 * 359.97438 * 24 16 14 38 38 H 1.08988 * 110.01591 * 63.19620 * 25 11 10 39 39 H 1.08995 * 110.49063 * 335.78666 * 26 25 11 40 40 H 1.08998 * 110.48209 * 98.43043 * 26 25 11 41 41 H 1.08998 * 110.75716 * 279.62901 * 27 26 25 42 42 H 1.08996 * 110.91231 * 156.33093 * 27 26 25 43 43 H 1.09004 * 110.48939 * 203.37485 * 28 27 26 44 44 H 1.09002 * 110.59896 * 80.78816 * 28 27 26 45 45 H 1.08996 * 110.03057 * 238.56785 * 29 25 11 46 46 H 1.08996 * 110.03419 * 0.02562 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8949 -1.6975 0.9287 13 7 5.9509 -1.3234 -1.1343 14 6 6.6028 -0.1627 -0.9241 15 8 6.8295 0.2102 0.2105 16 6 7.0421 0.6569 -2.0731 17 6 6.7818 0.2304 -3.3978 18 6 7.1844 0.9822 -4.4419 19 7 7.8440 2.1555 -4.2431 20 7 8.3736 3.1279 -5.1037 21 7 8.8975 4.0436 -4.3620 22 7 8.7579 3.7587 -3.1164 23 6 8.1161 2.6063 -2.9797 24 6 7.7128 1.8503 -1.8660 25 6 6.3804 -3.5109 -0.1281 26 6 6.0040 -4.4522 1.0348 27 6 7.3296 -5.1734 1.3838 28 6 8.3843 -4.0523 1.2116 29 6 7.8938 -3.2565 -0.0156 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0425 -0.8909 33 1 3.8492 -3.0423 0.8891 34 1 5.7032 -1.5844 -2.0352 35 1 6.2598 -0.6989 -3.5721 36 1 6.9810 0.6489 -5.4489 37 1 7.9217 2.1954 -0.8642 38 1 6.1513 -3.9850 -1.0824 39 1 5.6454 -3.8784 1.8893 40 1 5.2510 -5.1721 0.7143 41 1 7.5187 -5.9917 0.6890 42 1 7.3161 -5.5365 2.4114 43 1 9.3684 -4.4803 1.0203 44 1 8.4123 -3.4133 2.0942 45 1 8.3993 -3.6081 -0.9150 46 1 8.0840 -2.1931 0.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671547953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:05 Heat of formation + Delta-G solvation = 95.703398 kcal Electronic energy + Delta-G solvation = -30301.017396 eV Core-core repulsion = 26227.810424 eV Total energy + Delta-G solvation = -4073.206972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.62702 -41.59073 -39.86159 -38.94318 -37.02009 -35.46531 -35.21761 -33.74430 -33.06905 -31.72172 -31.27632 -29.50598 -27.99702 -26.77353 -25.97358 -24.68974 -24.04106 -23.06165 -22.17433 -21.34377 -20.85050 -19.98803 -19.66867 -19.17795 -18.13150 -18.10554 -17.25649 -16.78473 -16.58813 -16.33200 -16.24426 -16.02348 -15.58868 -15.36933 -15.07309 -14.81790 -14.50578 -14.27698 -14.22225 -14.04439 -13.86640 -13.73579 -13.25788 -13.16980 -12.99900 -12.81128 -12.65776 -12.34977 -12.25964 -12.20977 -11.89238 -11.86989 -11.79269 -11.67154 -11.43730 -11.39414 -11.38070 -11.21104 -10.98824 -10.11544 -9.84763 -9.28617 -8.04886 -5.35408 -1.15701 -0.79943 0.52331 0.84360 1.27405 1.28499 1.35700 1.39098 1.72335 2.17799 2.42365 2.50464 2.81824 3.17935 3.27901 3.38170 3.45876 3.65765 3.75779 3.84421 3.87223 3.98187 4.01666 4.18277 4.26284 4.39963 4.44972 4.55653 4.61935 4.65947 4.75477 4.77214 4.80133 4.87891 4.91898 4.94619 5.08819 5.14732 5.16045 5.17253 5.33325 5.34094 5.47566 5.55874 5.61871 5.77585 6.19844 6.36502 7.02045 7.03786 7.07515 7.85353 8.00791 9.16698 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.004459 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.858312 B = 6278.504865 C = 9246.639127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.221 4.221 8 H 0.068 0.932 9 N -0.757 5.757 10 C 0.143 3.857 11 C 0.145 3.855 12 H 0.078 0.922 13 N -0.689 5.689 14 C 0.557 3.443 15 O -0.559 6.559 16 C -0.059 4.059 17 C -0.096 4.096 18 C 0.115 3.885 19 N -0.292 5.292 20 N -0.119 5.119 21 N -0.030 5.030 22 N -0.343 5.343 23 C 0.227 3.773 24 C -0.040 4.040 25 C -0.086 4.086 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.114 4.114 30 H 0.256 0.744 31 H 0.361 0.639 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.419 0.581 35 H 0.218 0.782 36 H 0.235 0.765 37 H 0.175 0.825 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.651 -10.894 -8.203 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.245 4.245 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.352 4.352 8 H 0.086 0.914 9 N -0.402 5.402 10 C 0.017 3.983 11 C 0.040 3.960 12 H 0.096 0.904 13 N -0.340 5.340 14 C 0.343 3.657 15 O -0.438 6.438 16 C -0.071 4.071 17 C -0.119 4.119 18 C -0.011 4.011 19 N -0.072 5.072 20 N -0.102 5.102 21 N -0.023 5.023 22 N -0.205 5.205 23 C -0.025 4.025 24 C -0.064 4.064 25 C -0.106 4.106 26 C -0.160 4.160 27 C -0.156 4.156 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.065 0.935 31 H 0.194 0.806 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.258 0.742 35 H 0.235 0.765 36 H 0.252 0.748 37 H 0.192 0.808 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.313 -9.500 -8.259 23.898 hybrid contribution -0.627 0.906 0.391 1.169 sum 19.686 -8.594 -7.868 22.876 Atomic orbital electron populations 1.69831 1.06723 1.26297 1.60193 1.25241 0.95738 1.00107 1.03388 0.85750 0.78437 0.81494 0.78151 1.20009 1.22778 1.19328 1.19066 0.82628 0.93447 1.40087 0.91403 1.42726 1.02441 1.04183 1.90870 1.21257 0.89362 0.87567 1.00159 1.21432 0.93606 0.91140 0.89816 0.90424 1.45651 1.56422 1.19774 1.12179 1.18030 0.78414 0.81416 0.87814 1.90848 1.57382 1.71068 1.24519 1.20366 0.97202 0.94299 0.95234 1.21721 0.99557 1.02585 0.87996 1.22514 0.92536 0.80973 1.05107 1.49205 1.34495 1.17186 1.06350 1.82678 1.18888 0.96244 1.12428 1.77835 1.10452 1.17147 0.96854 1.75147 1.22410 1.12774 1.10153 1.22717 0.98443 0.93533 0.87823 1.20762 0.96111 0.92012 0.97495 1.22055 0.94598 0.92867 1.01058 1.22443 0.98276 0.97959 0.97359 1.22466 0.93799 0.97566 1.01740 1.22370 0.99190 0.97232 0.97698 1.22143 0.94483 0.99541 0.99035 0.93475 0.80612 0.93115 0.94294 0.74210 0.76534 0.74843 0.80811 0.87935 0.92772 0.90363 0.90145 0.91551 0.90813 0.93165 0.90097 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.03 13.97 21.65 0.30 -60.73 16 2 C -0.05 -3.01 5.50 84.86 0.47 -2.55 16 3 Si 0.93 45.61 27.73 68.60 1.90 47.51 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.27 -12.70 6.52 99.48 0.65 -12.05 16 7 C -0.22 -11.77 10.47 84.03 0.88 -10.89 16 8 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 9 N -0.76 -32.03 5.24 -343.44 -1.80 -33.83 16 10 C 0.14 4.36 5.59 86.38 0.48 4.85 16 11 C 0.14 3.37 1.71 44.99 0.08 3.44 16 12 H 0.08 2.32 6.91 -2.39 -0.02 2.30 16 13 N -0.69 -13.24 3.98 -445.43 -1.77 -15.02 16 14 C 0.56 13.09 7.08 86.78 0.61 13.70 16 15 O -0.56 -18.13 15.68 -3.91 -0.06 -18.19 16 16 C -0.06 -1.07 5.90 -19.86 -0.12 -1.19 16 17 C -0.10 -0.87 9.48 22.31 0.21 -0.66 16 18 C 0.11 1.16 11.18 83.25 0.93 2.09 16 19 N -0.29 -6.00 3.94 -193.23 -0.76 -6.76 16 20 N -0.12 -3.06 13.98 37.02 0.52 -2.54 16 21 N -0.03 -0.90 13.35 37.02 0.49 -0.41 16 22 N -0.34 -10.24 12.27 -55.72 -0.68 -10.93 16 23 C 0.23 5.61 8.02 134.05 1.08 6.68 16 24 C -0.04 -0.87 9.70 22.88 0.22 -0.65 16 25 C -0.09 -1.37 2.71 -10.07 -0.03 -1.40 16 26 C -0.12 -2.06 5.31 31.67 0.17 -1.89 16 27 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 28 C -0.13 -1.94 6.83 31.67 0.22 -1.72 16 29 C -0.11 -1.75 6.25 31.32 0.20 -1.56 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.36 15.53 5.18 -92.71 -0.48 15.05 16 32 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.04 1.26 7.15 -2.38 -0.02 1.24 16 34 H 0.42 4.86 6.92 -92.70 -0.64 4.22 16 35 H 0.22 0.02 6.48 -2.91 -0.02 0.00 16 36 H 0.24 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.17 3.95 7.67 -2.91 -0.02 3.93 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.13 7.50 -2.39 -0.02 1.11 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 0.92 6.88 -2.39 -0.02 0.90 16 Total: -1.00 -80.63 377.79 3.61 -77.01 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.14 Total: 17.03 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.62 Total: 6.85 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -3.70 Total: -130.21 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.06 Total: -18.19 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -80.63 3.61 -77.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671547953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.718 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds