Wall clock time and date at job start Wed Apr 1 2020 04:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46975 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47125 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 165.36928 * 7 2 1 9 9 N 1.36930 * 120.00431 * 345.36314 * 7 2 1 10 10 C 1.46923 * 120.63367 * 328.35828 * 9 7 2 11 11 C 1.53197 * 108.89587 * 233.67890 * 10 9 7 12 12 C 1.53042 * 109.31071 * 305.29103 * 11 10 9 13 13 C 1.53044 * 109.53623 * 61.36193 * 12 11 10 14 14 C 1.47208 * 120.81370 * 148.49929 * 9 7 2 15 15 H 1.09006 * 109.55778 * 246.15672 * 14 9 7 16 16 C 1.52998 * 109.65368 * 6.46303 * 14 9 7 17 17 N 1.46500 * 109.47215 * 299.39446 * 16 14 9 18 18 C 1.34777 * 120.00269 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99857 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00053 * 179.97438 * 18 17 16 21 21 C 1.50704 * 109.46995 * 179.97438 * 20 18 17 22 22 N 1.32608 * 125.18798 * 269.69421 * 21 20 18 23 23 C 1.32827 * 109.75730 * 179.88076 * 22 21 20 24 24 N 1.33825 * 132.50497 * 180.10797 * 23 22 21 25 25 C 1.31343 * 120.86442 * 180.29341 * 24 23 22 26 26 C 1.40039 * 120.31626 * 0.02562 * 25 24 23 27 27 C 1.35787 * 119.23757 * 359.97438 * 26 25 24 28 28 N 1.35975 * 119.02170 * 0.02562 * 27 26 25 29 29 N 1.31181 * 125.18327 * 90.00415 * 21 20 18 30 30 H 0.97003 * 120.00152 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58895 * 113.81734 * 10 9 7 32 32 H 1.09007 * 109.58405 * 353.53408 * 10 9 7 33 33 H 1.08996 * 109.49452 * 65.24115 * 11 10 9 34 34 H 1.08999 * 109.49866 * 185.33949 * 11 10 9 35 35 H 1.08995 * 109.46072 * 181.38433 * 12 11 10 36 36 H 1.08994 * 109.45775 * 301.35777 * 12 11 10 37 37 H 1.09004 * 109.49556 * 58.59026 * 13 12 11 38 38 H 1.09005 * 109.49474 * 178.68025 * 13 12 11 39 39 H 1.09002 * 109.46847 * 59.38640 * 16 14 9 40 40 H 1.08992 * 109.47546 * 179.39269 * 16 14 9 41 41 H 0.97006 * 120.00146 * 359.97438 * 17 16 14 42 42 H 1.08999 * 109.47567 * 299.99776 * 20 18 17 43 43 H 1.09005 * 109.47027 * 60.00497 * 20 18 17 44 44 H 1.08001 * 119.84325 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.38688 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.48760 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2172 -0.2368 9 7 1.3589 -2.3689 0.2986 10 6 0.2310 -2.3765 1.2401 11 6 0.5054 -3.4127 2.3346 12 6 0.7889 -4.7700 1.6870 13 6 2.0312 -4.6642 0.7995 14 6 1.7741 -3.6422 -0.3123 15 1 0.9837 -4.0071 -0.9684 16 6 3.0554 -3.4312 -1.1214 17 7 2.8065 -2.4542 -2.1843 18 6 3.7991 -2.1088 -3.0281 19 8 4.8984 -2.6065 -2.9073 20 6 3.5428 -1.1043 -4.1218 21 6 4.8053 -0.8954 -4.9178 22 7 5.7318 0.0165 -4.6559 23 6 6.7123 -0.0706 -5.5477 24 7 7.8515 0.6130 -5.7087 25 6 8.6716 0.3330 -6.6956 26 6 8.3650 -0.6908 -7.6006 27 6 7.2113 -1.3899 -7.4452 28 7 6.3835 -1.0756 -6.4134 29 7 5.1525 -1.5841 -5.9790 30 1 -0.4850 0.8401 0.0004 31 1 -0.6851 -2.6381 0.7107 32 1 0.1240 -1.3894 1.6900 33 1 1.3699 -3.1019 2.9212 34 1 -0.3656 -3.4946 2.9847 35 1 0.9602 -5.5146 2.4643 36 1 -0.0661 -5.0685 1.0804 37 1 2.8813 -4.3417 1.4007 38 1 2.2461 -5.6370 0.3570 39 1 3.8428 -3.0610 -0.4648 40 1 3.3661 -4.3778 -1.5635 41 1 1.9273 -2.0558 -2.2808 42 1 2.7559 -1.4750 -4.7787 43 1 3.2315 -0.1576 -3.6800 44 1 9.5864 0.8955 -6.8103 45 1 9.0387 -0.9223 -8.4123 46 1 6.9551 -2.1838 -8.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690458518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:37 Heat of formation + Delta-G solvation = 124.717427 kcal Electronic energy + Delta-G solvation = -30066.352822 eV Core-core repulsion = 25994.403993 eV Total energy + Delta-G solvation = -4071.948829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.99930 -39.48594 -38.74779 -37.63002 -34.73850 -34.14435 -33.04650 -32.47883 -30.92604 -30.76498 -29.92234 -29.24079 -25.96740 -24.99362 -24.56732 -23.83826 -22.15190 -21.59262 -20.62134 -19.78513 -19.07091 -18.55697 -18.24627 -17.13716 -16.60778 -16.44337 -15.95697 -15.61825 -15.34163 -14.88807 -14.48812 -14.00180 -13.88321 -13.56456 -13.51657 -13.43840 -13.25646 -12.87422 -12.76451 -12.71050 -12.45663 -12.12961 -12.09182 -11.99762 -11.54420 -11.16912 -10.91534 -10.73543 -10.52930 -10.25895 -10.24588 -10.14321 -10.11470 -9.97388 -9.85535 -9.54702 -9.42818 -9.21402 -8.94485 -8.56972 -8.22919 -6.64203 -5.82731 -3.29314 0.20097 0.53727 1.74144 2.39899 3.08265 3.15815 3.27552 3.37356 3.47742 3.55010 3.69579 3.94984 4.00501 4.39557 4.47191 4.55894 4.79551 5.01798 5.22853 5.32563 5.34831 5.38847 5.50442 5.52328 5.64517 5.65489 5.69764 5.97929 5.99110 6.05567 6.10902 6.16128 6.17166 6.32598 6.36710 6.43032 6.60320 6.71799 6.73858 6.86100 6.98756 7.16613 7.24504 7.38185 7.64531 7.82768 7.87115 8.21562 8.42125 8.82498 9.17941 9.79027 10.37996 11.24003 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.002887 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.754118 B = 9696.255202 C =10927.682620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.689 5.689 18 C 0.520 3.480 19 O -0.556 6.556 20 C -0.057 4.057 21 C 0.311 3.689 22 N -0.507 5.507 23 C 0.439 3.561 24 N -0.452 5.452 25 C 0.201 3.799 26 C -0.230 4.230 27 C 0.174 3.826 28 N -0.327 5.327 29 N -0.324 5.324 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.417 0.583 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.189 0.811 45 H 0.173 0.827 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.400 -4.692 -14.342 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.340 5.340 18 C 0.303 3.697 19 O -0.436 6.436 20 C -0.100 4.100 21 C 0.030 3.970 22 N -0.238 5.238 23 C 0.079 3.921 24 N -0.166 5.166 25 C 0.014 3.986 26 C -0.256 4.256 27 C 0.036 3.964 28 N -0.107 5.107 29 N -0.155 5.155 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.206 0.794 45 H 0.190 0.810 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.445 -4.594 -13.436 17.628 hybrid contribution 0.113 0.562 -0.628 0.851 sum 10.558 -4.032 -14.065 18.043 Atomic orbital electron populations 1.70029 1.05168 1.25441 1.53589 1.25059 0.95147 0.98118 1.00579 0.86434 0.80055 0.84302 0.77489 1.19879 1.21448 1.21578 1.19235 0.92206 0.84002 1.42704 0.91191 1.44128 1.37263 1.01968 1.47848 1.20735 0.88771 0.97378 0.88308 1.22195 1.00022 0.96570 0.99569 1.21359 0.97642 0.97369 0.98104 1.21937 0.98300 0.98218 0.98260 1.20781 0.93323 0.88521 0.92063 0.94964 1.21286 0.98411 0.90527 0.88536 1.45870 1.14470 1.43588 1.30063 1.19806 0.84945 0.82324 0.82607 1.90678 1.23764 1.55605 1.73545 1.20107 0.91095 1.02960 0.95823 1.23628 0.95169 0.87786 0.90396 1.70745 1.02174 1.26386 1.24450 1.22756 0.94011 0.86974 0.88368 1.67996 1.00610 1.25937 1.22038 1.23547 0.96690 0.91978 0.86366 1.21906 0.98271 1.00360 1.05039 1.22140 0.88091 0.98030 0.88133 1.48818 1.16087 1.25142 1.20610 1.78531 0.94871 1.23326 1.18765 0.93677 0.96332 0.89969 0.92836 0.93548 0.93747 0.92870 0.92091 0.93056 0.91543 0.92692 0.74543 0.85993 0.85097 0.79441 0.80991 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 11.32 55.49 0.63 -23.54 16 2 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 3 Si 0.89 21.39 29.58 -169.99 -5.03 16.36 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.28 7.00 -15.06 -0.11 -6.38 16 8 H 0.07 1.82 5.93 -52.49 -0.31 1.51 16 9 N -0.59 -13.34 2.98 -164.56 -0.49 -13.84 16 10 C 0.17 3.89 5.26 -3.71 -0.02 3.87 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.91 16 13 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16 14 C 0.16 3.07 3.00 -67.45 -0.20 2.87 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C 0.14 2.60 4.43 -4.04 -0.02 2.59 16 17 N -0.69 -13.12 3.89 -60.30 -0.23 -13.36 16 18 C 0.52 10.15 7.82 -10.99 -0.09 10.06 16 19 O -0.56 -12.77 16.03 5.56 0.09 -12.68 16 20 C -0.06 -0.95 6.33 -29.04 -0.18 -1.13 16 21 C 0.31 5.72 6.59 -157.01 -1.03 4.69 16 22 N -0.51 -10.07 11.25 -11.80 -0.13 -10.21 16 23 C 0.44 7.42 8.99 -323.13 -2.91 4.52 16 24 N -0.45 -6.22 10.48 -13.82 -0.14 -6.36 16 25 C 0.20 1.49 11.26 -17.09 -0.19 1.30 16 26 C -0.23 -1.22 10.07 -39.78 -0.40 -1.62 16 27 C 0.17 1.46 11.32 -16.59 -0.19 1.28 16 28 N -0.33 -4.75 3.91 -13.84 -0.05 -4.80 16 29 N -0.32 -5.50 12.78 32.39 0.41 -5.09 16 30 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 2.09 6.26 -51.92 -0.32 1.76 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.41 7.41 -51.93 -0.38 1.03 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.42 8.02 7.44 -40.82 -0.30 7.72 16 42 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.13 2.11 8.14 -51.93 -0.42 1.68 16 44 H 0.19 0.51 8.06 -52.49 -0.42 0.08 16 45 H 0.17 0.10 8.06 -52.49 -0.42 -0.33 16 46 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -35.92 376.97 -11.53 -47.46 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.38 Total: 5.20 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: -5.88 Total: 15.18 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -0.01 Total: -77.19 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.92 -11.53 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690458518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.173 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds