Wall clock time and date at job start Wed Apr 1 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46975 * 300.00032 * 3 2 1 6 6 H 1.48496 * 109.47125 * 59.99802 * 3 2 1 7 7 C 1.38805 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99786 * 165.36928 * 7 2 1 9 9 N 1.36930 * 120.00431 * 345.36314 * 7 2 1 10 10 C 1.46923 * 120.63367 * 328.35828 * 9 7 2 11 11 C 1.53197 * 108.89587 * 233.67890 * 10 9 7 12 12 C 1.53042 * 109.31071 * 305.29103 * 11 10 9 13 13 C 1.53044 * 109.53623 * 61.36193 * 12 11 10 14 14 C 1.47208 * 120.81370 * 148.49929 * 9 7 2 15 15 H 1.09006 * 109.55778 * 246.15672 * 14 9 7 16 16 C 1.52998 * 109.65368 * 6.46303 * 14 9 7 17 17 N 1.46500 * 109.47215 * 299.39446 * 16 14 9 18 18 C 1.34777 * 120.00269 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99857 * 359.97438 * 18 17 16 20 20 C 1.50695 * 120.00053 * 179.97438 * 18 17 16 21 21 C 1.50704 * 109.46995 * 179.97438 * 20 18 17 22 22 N 1.32608 * 125.18798 * 269.69421 * 21 20 18 23 23 C 1.32827 * 109.75730 * 179.88076 * 22 21 20 24 24 N 1.33825 * 132.50497 * 180.10797 * 23 22 21 25 25 C 1.31343 * 120.86442 * 180.29341 * 24 23 22 26 26 C 1.40039 * 120.31626 * 0.02562 * 25 24 23 27 27 C 1.35787 * 119.23757 * 359.97438 * 26 25 24 28 28 N 1.35975 * 119.02170 * 0.02562 * 27 26 25 29 29 N 1.31181 * 125.18327 * 90.00415 * 21 20 18 30 30 H 0.97003 * 120.00152 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58895 * 113.81734 * 10 9 7 32 32 H 1.09007 * 109.58405 * 353.53408 * 10 9 7 33 33 H 1.08996 * 109.49452 * 65.24115 * 11 10 9 34 34 H 1.08999 * 109.49866 * 185.33949 * 11 10 9 35 35 H 1.08995 * 109.46072 * 181.38433 * 12 11 10 36 36 H 1.08994 * 109.45775 * 301.35777 * 12 11 10 37 37 H 1.09004 * 109.49556 * 58.59026 * 13 12 11 38 38 H 1.09005 * 109.49474 * 178.68025 * 13 12 11 39 39 H 1.09002 * 109.46847 * 59.38640 * 16 14 9 40 40 H 1.08992 * 109.47546 * 179.39269 * 16 14 9 41 41 H 0.97006 * 120.00146 * 359.97438 * 17 16 14 42 42 H 1.08999 * 109.47567 * 299.99776 * 20 18 17 43 43 H 1.09005 * 109.47027 * 60.00497 * 20 18 17 44 44 H 1.08001 * 119.84325 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.38688 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.48760 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2172 -0.2368 9 7 1.3589 -2.3689 0.2986 10 6 0.2310 -2.3765 1.2401 11 6 0.5054 -3.4127 2.3346 12 6 0.7889 -4.7700 1.6870 13 6 2.0312 -4.6642 0.7995 14 6 1.7741 -3.6422 -0.3123 15 1 0.9837 -4.0071 -0.9684 16 6 3.0554 -3.4312 -1.1214 17 7 2.8065 -2.4542 -2.1843 18 6 3.7991 -2.1088 -3.0281 19 8 4.8984 -2.6065 -2.9073 20 6 3.5428 -1.1043 -4.1218 21 6 4.8053 -0.8954 -4.9178 22 7 5.7318 0.0165 -4.6559 23 6 6.7123 -0.0706 -5.5477 24 7 7.8515 0.6130 -5.7087 25 6 8.6716 0.3330 -6.6956 26 6 8.3650 -0.6908 -7.6006 27 6 7.2113 -1.3899 -7.4452 28 7 6.3835 -1.0756 -6.4134 29 7 5.1525 -1.5841 -5.9790 30 1 -0.4850 0.8401 0.0004 31 1 -0.6851 -2.6381 0.7107 32 1 0.1240 -1.3894 1.6900 33 1 1.3699 -3.1019 2.9212 34 1 -0.3656 -3.4946 2.9847 35 1 0.9602 -5.5146 2.4643 36 1 -0.0661 -5.0685 1.0804 37 1 2.8813 -4.3417 1.4007 38 1 2.2461 -5.6370 0.3570 39 1 3.8428 -3.0610 -0.4648 40 1 3.3661 -4.3778 -1.5635 41 1 1.9273 -2.0558 -2.2808 42 1 2.7559 -1.4750 -4.7787 43 1 3.2315 -0.1576 -3.6800 44 1 9.5864 0.8955 -6.8103 45 1 9.0387 -0.9223 -8.4123 46 1 6.9551 -2.1838 -8.1312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690458518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:36 Heat of formation + Delta-G solvation = 101.425278 kcal Electronic energy + Delta-G solvation = -30067.362846 eV Core-core repulsion = 25994.403993 eV Total energy + Delta-G solvation = -4072.958853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.01038 -40.91528 -39.83577 -39.19928 -35.75666 -35.62681 -34.88718 -33.60160 -32.35952 -31.82650 -31.68835 -30.43087 -27.62195 -26.43085 -25.61532 -24.81553 -23.81139 -22.86495 -22.14012 -21.26815 -20.65297 -19.49498 -19.16308 -18.67077 -17.99554 -17.42115 -17.33675 -17.18475 -16.72302 -16.24970 -15.78019 -15.57850 -15.40223 -14.91889 -14.86459 -14.60774 -14.54346 -14.23938 -14.06057 -13.77473 -13.73518 -13.64264 -13.57601 -13.13101 -13.09458 -12.84114 -12.75544 -12.56772 -12.30977 -12.02539 -11.78914 -11.52181 -11.38151 -11.23279 -11.08428 -11.01590 -10.95338 -10.61591 -10.51043 -9.93370 -9.88829 -8.53744 -7.82738 -5.28649 -0.49511 -0.34909 0.85991 1.30306 1.39489 1.47535 1.56008 1.62372 2.13293 2.36722 2.47445 2.51986 2.79107 3.32661 3.37669 3.50859 3.58660 3.87035 3.97032 4.00976 4.13648 4.23217 4.28189 4.28396 4.38656 4.44663 4.54200 4.56123 4.65349 4.75362 4.82916 4.88225 5.00794 5.03436 5.05842 5.15662 5.22857 5.29286 5.38163 5.38684 5.47727 5.59901 5.64790 5.77761 5.85467 6.38077 6.45994 6.64833 6.79322 7.21271 7.27213 7.89686 8.43752 9.21644 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.002887 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.754118 B = 9696.255202 C =10927.682620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 0.929 3.071 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.039 0.961 16 C 0.141 3.859 17 N -0.687 5.687 18 C 0.520 3.480 19 O -0.593 6.593 20 C -0.052 4.052 21 C 0.291 3.709 22 N -0.569 5.569 23 C 0.419 3.581 24 N -0.499 5.499 25 C 0.211 3.789 26 C -0.188 4.188 27 C 0.144 3.856 28 N -0.332 5.332 29 N -0.342 5.342 30 H 0.249 0.751 31 H 0.005 0.995 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.240 0.760 45 H 0.236 0.764 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 -6.430 -16.544 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.221 4.221 3 Si 0.760 3.240 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.057 0.943 16 C 0.017 3.983 17 N -0.337 5.337 18 C 0.305 3.695 19 O -0.475 6.475 20 C -0.094 4.094 21 C 0.010 3.990 22 N -0.303 5.303 23 C 0.059 3.941 24 N -0.216 5.216 25 C 0.028 3.972 26 C -0.211 4.211 27 C 0.009 3.991 28 N -0.111 5.111 29 N -0.174 5.174 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.256 0.744 45 H 0.253 0.747 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.425 -6.356 -15.686 20.996 hybrid contribution -0.199 1.087 -0.129 1.113 sum 12.226 -5.269 -15.815 20.672 Atomic orbital electron populations 1.70103 1.05718 1.25283 1.55416 1.25361 0.95486 0.99518 1.01701 0.85808 0.78323 0.82801 0.77116 1.21392 1.21340 1.22009 1.19157 0.91567 0.85003 1.40811 0.92577 1.44292 1.37093 1.02594 1.48539 1.20573 0.88231 0.96871 0.89089 1.22058 1.00424 0.96690 0.98332 1.21341 0.97464 0.96405 0.98721 1.21899 0.98299 0.98684 0.97338 1.20942 0.93156 0.87494 0.92958 0.94302 1.21254 0.97641 0.91133 0.88271 1.45879 1.14325 1.43518 1.29930 1.20254 0.84189 0.82166 0.82855 1.90643 1.25148 1.57117 1.74616 1.20097 0.91992 1.01869 0.95407 1.23683 0.95623 0.88437 0.91290 1.70556 1.04020 1.28440 1.27285 1.22871 0.94565 0.88014 0.88648 1.68107 1.00809 1.27360 1.25325 1.24682 0.96519 0.91757 0.84195 1.22696 0.96886 0.97001 1.04547 1.23218 0.88424 0.99947 0.87555 1.48870 1.15799 1.24750 1.21693 1.78300 0.96565 1.23893 1.18668 0.94160 0.97695 0.93509 0.93813 0.91656 0.90803 0.92160 0.93107 0.89932 0.94184 0.90855 0.74637 0.82787 0.85358 0.74360 0.74723 0.76682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.87 11.32 21.65 0.24 -50.63 16 2 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 3 Si 0.93 45.68 29.58 68.60 2.03 47.71 16 4 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.23 -12.03 7.00 84.03 0.59 -11.44 16 8 H 0.06 3.04 5.93 -2.91 -0.02 3.03 16 9 N -0.60 -27.57 2.98 -674.56 -2.01 -29.58 16 10 C 0.18 8.05 5.26 86.36 0.45 8.50 16 11 C -0.14 -4.86 6.08 30.67 0.19 -4.68 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.87 5.37 30.67 0.16 -3.70 16 14 C 0.16 6.05 3.00 44.92 0.13 6.18 16 15 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 16 C 0.14 5.42 4.43 86.38 0.38 5.81 16 17 N -0.69 -26.85 3.89 -463.08 -1.80 -28.65 16 18 C 0.52 21.14 7.82 87.66 0.69 21.83 16 19 O -0.59 -28.40 16.03 -3.02 -0.05 -28.44 16 20 C -0.05 -1.80 6.33 29.10 0.18 -1.62 16 21 C 0.29 11.28 6.59 138.69 0.91 12.19 16 22 N -0.57 -24.07 11.25 -191.24 -2.15 -26.22 16 23 C 0.42 14.54 8.99 261.60 2.35 16.90 16 24 N -0.50 -13.43 10.48 -197.64 -2.07 -15.50 16 25 C 0.21 2.35 11.26 85.20 0.96 3.31 16 26 C -0.19 -1.02 10.07 22.14 0.22 -0.79 16 27 C 0.14 2.00 11.32 83.48 0.94 2.94 16 28 N -0.33 -9.56 3.91 -197.69 -0.77 -10.33 16 29 N -0.34 -11.95 12.78 -51.45 -0.66 -12.61 16 30 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 31 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 32 H 0.05 2.44 6.26 -2.38 -0.01 2.43 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.04 1.75 7.41 -2.39 -0.02 1.74 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.42 16.43 7.44 -92.70 -0.69 15.74 16 42 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 43 H 0.13 4.44 8.14 -2.38 -0.02 4.42 16 44 H 0.24 -0.06 8.06 -2.91 -0.02 -0.08 16 45 H 0.24 -1.67 8.06 -2.91 -0.02 -1.69 16 46 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -86.48 376.97 1.86 -84.62 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.33 Total: 17.90 kcal Atomic # 6 Polarization: 42.95 SS G_CDS: 8.77 Total: 51.72 kcal Atomic # 7 Polarization: -164.30 SS G_CDS: -9.22 Total: -173.51 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -86.48 1.86 -84.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690458518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.045 kcal (2) G-P(sol) polarization free energy of solvation -86.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds