Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.98690 * 2 1 4 4 C 1.54473 * 109.99485 * 238.98140 * 2 1 3 5 5 C 1.54317 * 102.94077 * 219.41844 * 4 2 1 6 6 C 1.54081 * 102.54732 * 34.37551 * 5 4 2 7 7 N 1.47088 * 109.87469 * 121.07199 * 2 1 3 8 8 C 1.34774 * 125.62893 * 298.45071 * 7 2 1 9 9 O 1.21281 * 120.00138 * 359.71624 * 8 7 2 10 10 C 1.50701 * 119.99741 * 179.71920 * 8 7 2 11 11 S 1.81005 * 109.47173 * 179.97438 * 10 8 7 12 12 C 1.76189 * 100.00097 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00034 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48490 * 109.46901 * 150.00205 * 16 14 12 20 20 C 1.52146 * 110.63004 * 152.50660 * 5 4 2 21 21 C 1.53205 * 109.35835 * 178.89137 * 20 5 4 22 22 N 1.46863 * 109.42120 * 302.25013 * 21 20 5 23 23 C 1.46898 * 111.00664 * 186.60071 * 22 21 20 24 24 C 1.52997 * 109.47105 * 65.61091 * 23 22 21 25 25 F 1.39903 * 109.47068 * 180.02562 * 24 23 22 26 26 C 1.46867 * 111.33292 * 62.39964 * 22 21 20 27 27 C 1.52144 * 110.62918 * 276.24662 * 5 4 2 28 28 H 1.09001 * 109.47414 * 300.38215 * 1 2 3 29 29 H 1.09003 * 109.47409 * 60.37536 * 1 2 3 30 30 H 1.09003 * 109.47146 * 180.37983 * 1 2 3 31 31 H 1.09005 * 110.87837 * 100.96558 * 4 2 1 32 32 H 1.09002 * 110.67218 * 337.77498 * 4 2 1 33 33 H 1.09002 * 110.38044 * 205.15470 * 6 5 4 34 34 H 1.08999 * 110.38067 * 82.79793 * 6 5 4 35 35 H 1.09005 * 109.47318 * 59.99759 * 10 8 7 36 36 H 1.09002 * 109.47150 * 299.99724 * 10 8 7 37 37 H 0.97001 * 119.99662 * 179.97438 * 15 14 12 38 38 H 1.08991 * 109.49450 * 298.86049 * 20 5 4 39 39 H 1.09009 * 109.48594 * 58.93086 * 20 5 4 40 40 H 1.09001 * 109.48506 * 182.26861 * 21 20 5 41 41 H 1.09002 * 109.48288 * 62.23565 * 21 20 5 42 42 H 1.08998 * 109.47665 * 185.61699 * 23 22 21 43 43 H 1.09003 * 109.46899 * 305.61280 * 23 22 21 44 44 H 1.08998 * 109.47356 * 300.00798 * 24 23 22 45 45 H 1.09003 * 109.47088 * 60.00304 * 24 23 22 46 46 H 1.09003 * 109.48118 * 177.62453 * 26 22 21 47 47 H 1.09000 * 109.47869 * 57.58883 * 26 22 21 48 48 H 1.08997 * 109.48914 * 301.07057 * 27 5 4 49 49 H 1.08995 * 109.49009 * 61.11354 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0582 -0.7480 -1.2440 5 6 3.2682 -1.5291 -0.6898 6 6 2.8121 -1.8833 0.7387 7 7 2.0300 -0.7139 1.1848 8 6 1.8061 -0.3616 2.4663 9 8 1.1454 0.6238 2.7177 10 6 2.3770 -1.1921 3.5867 11 16 1.9057 -0.4662 5.1764 12 6 2.6822 -1.6042 6.2747 13 1 3.2405 -2.4402 5.8801 14 6 2.5763 -1.4263 7.6473 15 7 3.1560 -2.2768 8.4678 16 14 1.6112 0.0201 8.3299 17 1 2.5175 1.1842 8.4992 18 1 0.5195 0.3755 7.3881 19 1 1.0295 -0.3496 9.6451 20 6 3.5119 -2.7899 -1.5058 21 6 4.7339 -3.5271 -0.9487 22 7 5.8996 -2.6345 -0.9815 23 6 7.1236 -3.3526 -0.6022 24 6 7.4382 -4.4162 -1.6560 25 9 8.6036 -5.1006 -1.2945 26 6 5.6947 -1.4566 -0.1285 27 6 4.5066 -0.6460 -0.6565 28 1 -0.3634 0.5198 0.8865 29 1 -0.3634 0.5080 -0.8933 30 1 -0.3633 -1.0277 0.0068 31 1 2.3731 -0.0451 -2.0154 32 1 1.3026 -1.4313 -1.6318 33 1 3.6756 -2.0321 1.3870 34 1 2.1868 -2.7761 0.7272 35 1 3.4638 -1.2140 3.5056 36 1 1.9872 -2.2080 3.5210 37 1 3.0824 -2.1522 9.4270 38 1 2.6373 -3.4374 -1.4446 39 1 3.6930 -2.5201 -2.5464 40 1 4.9345 -4.4094 -1.5566 41 1 4.5375 -3.8310 0.0795 42 1 7.9530 -2.6484 -0.5378 43 1 6.9783 -3.8322 0.3659 44 1 6.6088 -5.1205 -1.7204 45 1 7.5836 -3.9367 -2.6241 46 1 6.5918 -0.8376 -0.1419 47 1 5.4901 -1.7784 0.8926 48 1 4.7273 -0.2911 -1.6632 49 1 4.3279 0.2066 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691958603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = -90.188694 kcal Electronic energy + Delta-G solvation = -28951.086218 eV Core-core repulsion = 24953.049599 eV Total energy + Delta-G solvation = -3998.036620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.93187 -41.05311 -38.98077 -37.19470 -33.96905 -32.46126 -32.26837 -31.43549 -30.09054 -28.89908 -27.06952 -26.04520 -25.62720 -24.13937 -23.06023 -22.11048 -21.30061 -19.38365 -18.65760 -17.66536 -17.07063 -16.72136 -16.54651 -16.11337 -15.82281 -15.23997 -15.09162 -15.01583 -14.81649 -14.59242 -14.36410 -14.17622 -13.86036 -13.64585 -13.37490 -13.09118 -12.93485 -12.81168 -12.66362 -12.53749 -12.34213 -12.15445 -11.86893 -11.63087 -11.59319 -11.45937 -11.31348 -11.27663 -11.05426 -11.01746 -10.85166 -10.61950 -10.56675 -10.34189 -9.87232 -9.44866 -9.02216 -8.75400 -8.57086 -8.51481 -6.94019 -6.30853 -4.02678 2.67896 2.95032 3.18887 3.31686 3.32784 3.49021 3.58268 4.06914 4.16037 4.22948 4.31537 4.39471 4.42115 4.55040 4.68943 4.75517 4.84013 4.87389 4.92655 4.99744 5.04269 5.08158 5.09019 5.14921 5.21761 5.26671 5.29537 5.36450 5.40197 5.47219 5.50276 5.54154 5.58360 5.59905 5.67134 5.68997 5.76731 5.80825 5.94784 5.96238 5.97980 6.05815 6.22798 6.47846 6.60231 6.64586 7.60555 7.92132 8.39110 8.45577 9.15341 10.78376 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.003116 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.391505 B = 8983.356979 C =11259.178059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.071 4.071 6 C 0.108 3.892 7 N -0.618 5.618 8 C 0.547 3.453 9 O -0.516 6.516 10 C -0.117 4.117 11 S -0.141 6.141 12 C -0.521 4.521 13 H 0.087 0.913 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.235 1.235 19 H -0.274 1.274 20 C -0.097 4.097 21 C 0.045 3.955 22 N -0.535 5.535 23 C 0.022 3.978 24 C 0.064 3.936 25 F -0.217 7.217 26 C 0.054 3.946 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.271 0.729 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -2.059 -26.349 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.072 4.072 6 C -0.015 4.015 7 N -0.355 5.355 8 C 0.336 3.664 9 O -0.391 6.391 10 C -0.268 4.268 11 S 0.086 5.914 12 C -0.669 4.669 13 H 0.105 0.895 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.159 1.159 19 H -0.199 1.199 20 C -0.135 4.135 21 C -0.083 4.083 22 N -0.260 5.260 23 C -0.107 4.107 24 C 0.009 3.991 25 F -0.199 7.199 26 C -0.073 4.073 27 C -0.136 4.136 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.759 -0.472 -26.147 26.297 hybrid contribution 0.492 -1.103 1.193 1.698 sum 3.250 -1.575 -24.954 25.214 Atomic orbital electron populations 1.22139 0.94853 1.02203 1.02898 1.21511 0.94539 0.96302 0.84248 0.90872 1.22722 0.96872 0.99244 0.96588 1.21119 0.95364 0.96124 0.94550 1.22365 0.95399 0.88980 0.94803 1.48584 1.53702 1.28484 1.04772 1.19926 0.79852 0.85073 0.81577 1.90689 1.38811 1.26892 1.82658 1.23257 1.03850 1.02408 0.97284 1.84778 1.71199 1.39931 0.95537 1.22298 1.38147 1.13594 0.92843 0.89501 1.24710 0.94516 0.96237 0.95795 1.69939 1.42348 1.35857 1.03530 0.86737 0.82240 0.82787 0.80117 1.19190 1.15902 1.19919 1.21407 0.97006 0.95172 0.99933 1.22294 0.90349 0.95387 1.00232 1.61818 1.02131 1.08009 1.54020 1.22627 0.93950 0.96870 0.97253 1.21954 0.84133 0.93869 0.99157 1.92775 1.51805 1.81570 1.93713 1.22183 0.99132 0.91556 0.94462 1.21399 0.92360 0.97464 1.02411 0.90935 0.92029 0.92641 0.89941 0.90286 0.90544 0.91387 0.88935 0.88785 0.91926 0.90862 0.90408 0.90401 0.94082 0.89485 0.93358 0.90801 0.89894 0.90289 0.94035 0.90598 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.11 37.16 0.34 -1.51 16 2 C 0.14 1.52 3.17 -66.84 -0.21 1.31 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -0.87 5.43 -25.27 -0.14 -1.01 16 5 C -0.07 -0.54 0.54 -154.13 -0.08 -0.62 16 6 C 0.11 1.11 4.77 -2.89 -0.01 1.10 16 7 N -0.62 -8.31 3.04 -163.27 -0.50 -8.81 16 8 C 0.55 9.98 7.66 -10.99 -0.08 9.89 16 9 O -0.52 -11.19 14.90 5.56 0.08 -11.11 16 10 C -0.12 -2.33 5.17 36.01 0.19 -2.14 16 11 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 12 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 13 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 14 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 15 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 16 Si 0.86 21.83 27.74 -169.99 -4.72 17.12 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.10 -0.60 4.85 -27.06 -0.13 -0.73 16 21 C 0.05 0.30 5.16 -3.74 -0.02 0.28 16 22 N -0.53 -3.96 4.64 -234.42 -1.09 -5.04 16 23 C 0.02 0.16 5.42 -3.83 -0.02 0.14 16 24 C 0.06 0.43 7.48 37.16 0.28 0.71 16 25 F -0.22 -2.10 17.36 2.25 0.04 -2.06 16 26 C 0.05 0.45 5.31 -3.73 -0.02 0.43 16 27 C -0.10 -0.79 4.79 -27.06 -0.13 -0.92 16 28 H 0.07 1.06 6.89 -51.93 -0.36 0.70 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.52 8.01 -51.93 -0.42 0.10 16 32 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16 33 H 0.08 0.84 5.69 -51.93 -0.30 0.54 16 34 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.09 1.73 7.86 -51.91 -0.41 1.32 16 36 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 0.41 8.03 -51.93 -0.42 -0.01 16 39 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.08 0.43 6.18 -51.93 -0.32 0.11 16 41 H 0.04 0.32 7.59 -51.93 -0.39 -0.08 16 42 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 43 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 6.41 -51.93 -0.33 0.08 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.62 8.00 -51.93 -0.42 0.21 16 47 H 0.04 0.40 6.56 -51.93 -0.34 0.06 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -33.39 389.71 -9.65 -43.03 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.29 Total: -2.54 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.17 Total: -5.08 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.81 Total: -39.65 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.39 -9.65 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691958603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.155 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds