Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.98690 * 2 1 4 4 C 1.54473 * 109.99485 * 238.98140 * 2 1 3 5 5 C 1.54317 * 102.94077 * 219.41844 * 4 2 1 6 6 C 1.54081 * 102.54732 * 34.37551 * 5 4 2 7 7 N 1.47088 * 109.87469 * 121.07199 * 2 1 3 8 8 C 1.34774 * 125.62893 * 298.45071 * 7 2 1 9 9 O 1.21281 * 120.00138 * 359.71624 * 8 7 2 10 10 C 1.50701 * 119.99741 * 179.71920 * 8 7 2 11 11 S 1.81005 * 109.47173 * 179.97438 * 10 8 7 12 12 C 1.76189 * 100.00097 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.38805 * 120.00013 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00034 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47174 * 270.00277 * 16 14 12 18 18 H 1.48501 * 109.47062 * 30.00228 * 16 14 12 19 19 H 1.48490 * 109.46901 * 150.00205 * 16 14 12 20 20 C 1.52146 * 110.63004 * 152.50660 * 5 4 2 21 21 C 1.53205 * 109.35835 * 178.89137 * 20 5 4 22 22 N 1.46863 * 109.42120 * 302.25013 * 21 20 5 23 23 C 1.46898 * 111.00664 * 186.60071 * 22 21 20 24 24 C 1.52997 * 109.47105 * 65.61091 * 23 22 21 25 25 F 1.39903 * 109.47068 * 180.02562 * 24 23 22 26 26 C 1.46867 * 111.33292 * 62.39964 * 22 21 20 27 27 C 1.52144 * 110.62918 * 276.24662 * 5 4 2 28 28 H 1.09001 * 109.47414 * 300.38215 * 1 2 3 29 29 H 1.09003 * 109.47409 * 60.37536 * 1 2 3 30 30 H 1.09003 * 109.47146 * 180.37983 * 1 2 3 31 31 H 1.09005 * 110.87837 * 100.96558 * 4 2 1 32 32 H 1.09002 * 110.67218 * 337.77498 * 4 2 1 33 33 H 1.09002 * 110.38044 * 205.15470 * 6 5 4 34 34 H 1.08999 * 110.38067 * 82.79793 * 6 5 4 35 35 H 1.09005 * 109.47318 * 59.99759 * 10 8 7 36 36 H 1.09002 * 109.47150 * 299.99724 * 10 8 7 37 37 H 0.97001 * 119.99662 * 179.97438 * 15 14 12 38 38 H 1.08991 * 109.49450 * 298.86049 * 20 5 4 39 39 H 1.09009 * 109.48594 * 58.93086 * 20 5 4 40 40 H 1.09001 * 109.48506 * 182.26861 * 21 20 5 41 41 H 1.09002 * 109.48288 * 62.23565 * 21 20 5 42 42 H 1.08998 * 109.47665 * 185.61699 * 23 22 21 43 43 H 1.09003 * 109.46899 * 305.61280 * 23 22 21 44 44 H 1.08998 * 109.47356 * 300.00798 * 24 23 22 45 45 H 1.09003 * 109.47088 * 60.00304 * 24 23 22 46 46 H 1.09003 * 109.48118 * 177.62453 * 26 22 21 47 47 H 1.09000 * 109.47869 * 57.58883 * 26 22 21 48 48 H 1.08997 * 109.48914 * 301.07057 * 27 5 4 49 49 H 1.08995 * 109.49009 * 61.11354 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0582 -0.7480 -1.2440 5 6 3.2682 -1.5291 -0.6898 6 6 2.8121 -1.8833 0.7387 7 7 2.0300 -0.7139 1.1848 8 6 1.8061 -0.3616 2.4663 9 8 1.1454 0.6238 2.7177 10 6 2.3770 -1.1921 3.5867 11 16 1.9057 -0.4662 5.1764 12 6 2.6822 -1.6042 6.2747 13 1 3.2405 -2.4402 5.8801 14 6 2.5763 -1.4263 7.6473 15 7 3.1560 -2.2768 8.4678 16 14 1.6112 0.0201 8.3299 17 1 2.5175 1.1842 8.4992 18 1 0.5195 0.3755 7.3881 19 1 1.0295 -0.3496 9.6451 20 6 3.5119 -2.7899 -1.5058 21 6 4.7339 -3.5271 -0.9487 22 7 5.8996 -2.6345 -0.9815 23 6 7.1236 -3.3526 -0.6022 24 6 7.4382 -4.4162 -1.6560 25 9 8.6036 -5.1006 -1.2945 26 6 5.6947 -1.4566 -0.1285 27 6 4.5066 -0.6460 -0.6565 28 1 -0.3634 0.5198 0.8865 29 1 -0.3634 0.5080 -0.8933 30 1 -0.3633 -1.0277 0.0068 31 1 2.3731 -0.0451 -2.0154 32 1 1.3026 -1.4313 -1.6318 33 1 3.6756 -2.0321 1.3870 34 1 2.1868 -2.7761 0.7272 35 1 3.4638 -1.2140 3.5056 36 1 1.9872 -2.2080 3.5210 37 1 3.0824 -2.1522 9.4270 38 1 2.6373 -3.4374 -1.4446 39 1 3.6930 -2.5201 -2.5464 40 1 4.9345 -4.4094 -1.5566 41 1 4.5375 -3.8310 0.0795 42 1 7.9530 -2.6484 -0.5378 43 1 6.9783 -3.8322 0.3659 44 1 6.6088 -5.1205 -1.7204 45 1 7.5836 -3.9367 -2.6241 46 1 6.5918 -0.8376 -0.1419 47 1 5.4901 -1.7784 0.8926 48 1 4.7273 -0.2911 -1.6632 49 1 4.3279 0.2066 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691958603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = -111.483858 kcal Electronic energy + Delta-G solvation = -28952.009646 eV Core-core repulsion = 24953.049599 eV Total energy + Delta-G solvation = -3998.960047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.59248 -41.91943 -40.07022 -38.16385 -34.80154 -34.70869 -33.38394 -32.03096 -30.76027 -30.35305 -27.91141 -27.73385 -26.94258 -24.78838 -23.72989 -22.97440 -22.03442 -20.51886 -19.88290 -19.20664 -18.20047 -17.52818 -17.26985 -17.15473 -17.10939 -16.44219 -16.42696 -15.98366 -15.75100 -15.72325 -15.41645 -15.12180 -14.94285 -14.80725 -14.47068 -14.31216 -14.01461 -13.82996 -13.59598 -13.38452 -13.35997 -13.19521 -13.07164 -12.96720 -12.90469 -12.63560 -12.35065 -12.27710 -12.07557 -11.96815 -11.90225 -11.71266 -11.51124 -11.21284 -11.19182 -10.99347 -10.89798 -10.59707 -9.72814 -9.37563 -9.05708 -8.55699 -6.27462 0.91967 1.28167 1.41969 1.49847 1.50469 2.03330 2.21539 2.63260 2.72508 2.82452 3.36411 3.36790 3.63060 3.76690 3.79230 3.88637 3.98504 4.07009 4.08371 4.17769 4.23219 4.25068 4.30047 4.34916 4.40035 4.43846 4.48926 4.53616 4.65143 4.68135 4.72522 4.74790 4.81629 4.92228 4.94396 4.99078 5.03817 5.09889 5.19531 5.20257 5.26943 5.38648 5.40127 5.48724 5.66181 5.97817 6.05997 6.06092 6.36364 6.89085 7.06445 8.56845 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.003116 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.391505 B = 8983.356979 C =11259.178059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.063 0.937 4 C -0.102 4.102 5 C -0.061 4.061 6 C 0.099 3.901 7 N -0.608 5.608 8 C 0.547 3.453 9 O -0.558 6.558 10 C -0.102 4.102 11 S -0.170 6.170 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.047 3.953 15 N -0.916 5.916 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.237 1.237 19 H -0.257 1.257 20 C -0.090 4.090 21 C 0.040 3.960 22 N -0.528 5.528 23 C 0.022 3.978 24 C 0.065 3.935 25 F -0.235 7.235 26 C 0.054 3.946 27 C -0.094 4.094 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.278 0.722 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.021 0.979 48 H 0.092 0.908 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -2.158 -29.508 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.082 0.918 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.023 4.023 7 N -0.342 5.342 8 C 0.335 3.665 9 O -0.437 6.437 10 C -0.253 4.253 11 S 0.057 5.943 12 C -0.678 4.678 13 H 0.077 0.923 14 C -0.158 4.158 15 N -0.553 5.553 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.161 1.161 19 H -0.181 1.181 20 C -0.127 4.127 21 C -0.087 4.087 22 N -0.252 5.252 23 C -0.107 4.107 24 C 0.010 3.990 25 F -0.217 7.217 26 C -0.074 4.074 27 C -0.131 4.131 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.039 0.961 48 H 0.110 0.890 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.235 -0.606 -29.352 29.443 hybrid contribution 0.737 -1.148 2.047 2.459 sum 2.972 -1.753 -27.306 27.523 Atomic orbital electron populations 1.22091 0.94841 1.02275 1.02382 1.21800 0.94599 0.96316 0.84612 0.91842 1.22720 0.96758 0.99489 0.94942 1.21093 0.95246 0.97089 0.92782 1.22662 0.94912 0.88188 0.96554 1.48541 1.52641 1.29140 1.03857 1.19541 0.79758 0.84422 0.82816 1.90671 1.40911 1.28532 1.83562 1.23199 1.04520 1.02764 0.94834 1.84664 1.71216 1.39947 0.98471 1.22421 1.37999 1.13470 0.93914 0.92275 1.25559 0.95407 0.98730 0.96124 1.70015 1.43601 1.37526 1.04200 0.85872 0.80933 0.79674 0.79931 1.18609 1.16105 1.18089 1.21399 0.97087 0.94119 1.00135 1.22412 0.90411 0.96017 0.99906 1.61869 1.02369 1.07831 1.53182 1.22612 0.94067 0.97033 0.96968 1.22077 0.83794 0.93852 0.99280 1.92740 1.53013 1.81987 1.93915 1.22153 0.99469 0.92131 0.93639 1.21352 0.92298 0.96763 1.02734 0.94805 0.89220 0.92160 0.87648 0.88351 0.91559 0.90148 0.88056 0.87781 0.91271 0.89457 0.88768 0.88661 0.95506 0.89732 0.94867 0.89319 0.88373 0.90247 0.96103 0.88985 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.11 71.98 0.66 -2.67 16 2 C 0.13 2.62 3.17 45.38 0.14 2.77 16 3 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.10 -1.12 5.43 31.54 0.17 -0.95 16 5 C -0.06 -0.76 0.54 -51.93 -0.03 -0.78 16 6 C 0.10 1.89 4.77 86.54 0.41 2.30 16 7 N -0.61 -15.82 3.04 -788.84 -2.40 -18.22 16 8 C 0.55 20.12 7.66 87.66 0.67 20.80 16 9 O -0.56 -24.76 14.90 -3.03 -0.05 -24.81 16 10 C -0.10 -4.12 5.17 71.24 0.37 -3.75 16 11 S -0.17 -8.81 18.55 -56.49 -1.05 -9.86 16 12 C -0.53 -31.46 10.04 67.96 0.68 -30.78 16 13 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 14 C 0.05 2.81 5.50 84.86 0.47 3.28 16 15 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 16 Si 0.91 45.46 27.74 68.60 1.90 47.36 16 17 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 C -0.09 -0.74 4.85 30.38 0.15 -0.59 16 21 C 0.04 0.43 5.16 86.38 0.45 0.88 16 22 N -0.53 -6.78 4.64 -895.57 -4.15 -10.93 16 23 C 0.02 0.30 5.42 86.30 0.47 0.77 16 24 C 0.06 0.75 7.48 71.98 0.54 1.29 16 25 F -0.24 -4.31 17.36 44.97 0.78 -3.53 16 26 C 0.05 0.83 5.31 86.38 0.46 1.29 16 27 C -0.09 -1.30 4.79 30.38 0.15 -1.15 16 28 H 0.03 0.98 6.89 -2.39 -0.02 0.96 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 0.79 8.01 -2.38 -0.02 0.77 16 32 H 0.10 0.80 7.71 -2.39 -0.02 0.78 16 33 H 0.07 1.43 5.69 -2.39 -0.01 1.42 16 34 H 0.08 1.39 7.92 -2.39 -0.02 1.37 16 35 H 0.10 3.87 7.86 -2.39 -0.02 3.85 16 36 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 37 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.09 0.55 8.03 -2.39 -0.02 0.53 16 39 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.10 0.72 6.18 -2.39 -0.01 0.71 16 41 H 0.03 0.37 7.59 -2.39 -0.02 0.36 16 42 H 0.08 1.19 7.98 -2.39 -0.02 1.18 16 43 H 0.03 0.56 8.13 -2.39 -0.02 0.54 16 44 H 0.09 0.76 6.41 -2.39 -0.02 0.75 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 1.21 8.00 -2.39 -0.02 1.19 16 47 H 0.02 0.41 6.56 -2.39 -0.02 0.39 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 0.98 7.91 -2.39 -0.02 0.96 16 Total: -1.00 -74.76 389.71 1.98 -72.79 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.89 Total: 10.40 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.75 Total: -7.29 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -6.25 Total: -85.06 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -74.76 1.98 -72.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691958603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.698 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds