Wall clock time and date at job start Wed Apr 1 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.86936 * 2 1 4 4 C 1.54481 * 109.87806 * 121.15695 * 2 1 3 5 5 C 1.54340 * 102.86509 * 140.88914 * 4 2 1 6 6 C 1.54287 * 102.43555 * 325.24276 * 5 4 2 7 7 N 1.47088 * 109.87974 * 238.99334 * 2 1 3 8 8 C 1.34778 * 125.62809 * 61.51655 * 7 2 1 9 9 O 1.21278 * 119.99748 * 0.02562 * 8 7 2 10 10 C 1.50697 * 120.00209 * 180.02562 * 8 7 2 11 11 S 1.80999 * 109.47181 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99825 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.38803 * 119.99855 * 179.72221 * 12 11 10 15 15 N 1.31634 * 119.99756 * 0.27728 * 14 12 11 16 16 Si 1.86803 * 120.00005 * 180.27923 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00123 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00074 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99873 * 16 14 12 20 20 C 1.52146 * 110.59169 * 207.27278 * 5 4 2 21 21 C 1.53216 * 109.36844 * 292.13291 * 20 5 4 22 22 N 1.46865 * 109.40918 * 302.28044 * 21 20 5 23 23 C 1.46903 * 111.00495 * 186.61306 * 22 21 20 24 24 C 1.53004 * 109.46704 * 45.59417 * 23 22 21 25 25 F 1.39899 * 109.46917 * 179.97438 * 24 23 22 26 26 C 1.46863 * 111.34646 * 62.40809 * 22 21 20 27 27 C 1.52139 * 110.59536 * 83.55053 * 5 4 2 28 28 H 1.09000 * 109.46915 * 179.55392 * 1 2 3 29 29 H 1.08997 * 109.47181 * 299.54993 * 1 2 3 30 30 H 1.08995 * 109.47081 * 59.55567 * 1 2 3 31 31 H 1.09000 * 110.73448 * 259.23420 * 4 2 1 32 32 H 1.09000 * 110.73195 * 22.54702 * 4 2 1 33 33 H 1.09005 * 110.51111 * 277.48046 * 6 5 4 34 34 H 1.09003 * 110.35301 * 155.06806 * 6 5 4 35 35 H 1.08999 * 109.47278 * 59.99800 * 10 8 7 36 36 H 1.09002 * 109.46837 * 300.00183 * 10 8 7 37 37 H 0.97000 * 119.99219 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.48946 * 52.10490 * 20 5 4 39 39 H 1.09010 * 109.48640 * 172.16769 * 20 5 4 40 40 H 1.09001 * 109.48204 * 182.30741 * 21 20 5 41 41 H 1.09000 * 109.49784 * 62.27440 * 21 20 5 42 42 H 1.09001 * 109.47022 * 165.59667 * 23 22 21 43 43 H 1.09000 * 109.47318 * 285.59712 * 23 22 21 44 44 H 1.09001 * 109.46983 * 300.00367 * 24 23 22 45 45 H 1.09000 * 109.46992 * 60.00095 * 24 23 22 46 46 H 1.09005 * 109.48128 * 177.61663 * 26 22 21 47 47 H 1.09001 * 109.49198 * 57.58224 * 26 22 21 48 48 H 1.08999 * 109.48732 * 187.83610 * 27 5 4 49 49 H 1.08998 * 109.48475 * 307.89785 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0553 -0.7516 1.2432 5 6 3.2701 -1.5257 0.6890 6 6 2.8128 -1.8820 -0.7409 7 7 2.0302 -0.7126 -1.1856 8 6 1.8059 -0.3591 -2.4667 9 8 1.1406 0.6236 -2.7170 10 6 2.3816 -1.1849 -3.5881 11 16 1.9083 -0.4584 -5.1769 12 6 2.6926 -1.5900 -6.2764 13 1 3.2543 -2.4242 -5.8827 14 6 2.5831 -1.4130 -7.6488 15 7 1.8980 -0.3966 -8.1287 16 14 3.4081 -2.6171 -8.8146 17 1 2.4676 -3.7215 -9.1325 18 1 3.7866 -1.9136 -10.0664 19 1 4.6257 -3.1733 -8.1717 20 6 3.5181 -2.7867 1.5034 21 6 3.9860 -2.3992 2.9100 22 7 5.1992 -1.5774 2.8116 23 6 5.7677 -1.3165 4.1408 24 6 5.7939 -2.6159 4.9482 25 9 6.3359 -2.3676 6.2138 26 6 4.9380 -0.3222 2.0954 27 6 4.5038 -0.6359 0.6600 28 1 -0.3633 -1.0276 -0.0080 29 1 -0.3633 0.5068 0.8940 30 1 -0.3633 0.5207 -0.8859 31 1 2.3656 -0.0489 2.0165 32 1 1.3011 -1.4395 1.6254 33 1 2.1880 -2.7751 -0.7306 34 1 3.6764 -2.0296 -1.3894 35 1 1.9967 -2.2027 -3.5245 36 1 3.4684 -1.2017 -3.5060 37 1 1.8219 -0.2727 -9.0877 38 1 2.5949 -3.3621 1.5729 39 1 4.2863 -3.3883 1.0174 40 1 4.2035 -3.3012 3.4821 41 1 3.2019 -1.8314 3.4108 42 1 6.7831 -0.9350 4.0332 43 1 5.1555 -0.5788 4.6595 44 1 4.7785 -2.9974 5.0557 45 1 6.4062 -3.3536 4.4295 46 1 5.8455 0.2815 2.0769 47 1 4.1456 0.2280 2.6028 48 1 5.3115 -1.1510 0.1401 49 1 4.2700 0.2929 0.1396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691958604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:14 Heat of formation + Delta-G solvation = -86.808160 kcal Electronic energy + Delta-G solvation = -28589.912844 eV Core-core repulsion = 24592.022815 eV Total energy + Delta-G solvation = -3997.890029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.07213 -41.01698 -38.99984 -37.15254 -33.97040 -32.42463 -32.14957 -31.56810 -30.03924 -28.68193 -27.09416 -26.18601 -25.47765 -24.16999 -23.04308 -21.96917 -21.47202 -19.14206 -18.63520 -17.64958 -17.22177 -16.71484 -16.61350 -16.04419 -15.90834 -15.23827 -15.15180 -14.81312 -14.76397 -14.60596 -14.46342 -14.11586 -13.87510 -13.61808 -13.46430 -13.07310 -12.91177 -12.70457 -12.55654 -12.45446 -12.40218 -12.10396 -11.75278 -11.63167 -11.55142 -11.49295 -11.30164 -11.10028 -11.05038 -11.01092 -10.77364 -10.74026 -10.58866 -10.41437 -9.80807 -9.30493 -9.06276 -8.80264 -8.46813 -8.22512 -6.49595 -6.21326 -3.91740 2.92529 3.09792 3.22408 3.25868 3.27228 3.30609 3.62335 4.06606 4.07417 4.18720 4.21613 4.28055 4.38276 4.47307 4.65717 4.76846 4.86060 4.89160 4.94947 4.96121 5.04132 5.10885 5.13776 5.18900 5.22350 5.29896 5.35996 5.37510 5.39613 5.42052 5.52086 5.58927 5.63870 5.65663 5.67773 5.70627 5.80656 5.90650 5.98314 6.00641 6.12150 6.14997 6.29320 6.53483 6.56991 6.57908 7.59850 7.72633 8.35581 8.60458 9.23967 10.86079 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.002268 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.105795 B =12342.925721 C =13410.477376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.070 4.070 6 C 0.112 3.888 7 N -0.621 5.621 8 C 0.549 3.451 9 O -0.515 6.515 10 C -0.147 4.147 11 S -0.061 6.061 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.100 4.100 21 C 0.046 3.954 22 N -0.534 5.534 23 C 0.024 3.976 24 C 0.057 3.943 25 F -0.217 7.217 26 C 0.059 3.941 27 C -0.101 4.101 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -5.018 27.457 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.011 4.011 7 N -0.358 5.358 8 C 0.338 3.662 9 O -0.389 6.389 10 C -0.297 4.297 11 S 0.166 5.834 12 C -0.682 4.682 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.138 4.138 21 C -0.082 4.082 22 N -0.259 5.259 23 C -0.104 4.104 24 C 0.002 3.998 25 F -0.198 7.198 26 C -0.069 4.069 27 C -0.138 4.138 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.733 -3.674 26.577 27.244 hybrid contribution 0.721 -1.464 0.034 1.632 sum 5.454 -5.138 26.611 27.646 Atomic orbital electron populations 1.22144 0.94948 1.02164 1.02856 1.21476 0.94507 0.96219 0.84309 0.91033 1.22811 0.97006 0.99284 0.96676 1.21150 0.95200 0.95955 0.94798 1.22271 0.95602 0.88979 0.94252 1.48623 1.53864 1.28534 1.04797 1.19986 0.79800 0.85000 0.81446 1.90690 1.38573 1.27010 1.82635 1.23510 1.03608 1.02605 0.99983 1.85389 1.69540 1.37841 0.90662 1.22855 1.38134 1.14171 0.93077 0.90968 1.24996 0.95257 0.95993 0.97368 1.70023 1.38501 1.28080 1.13677 0.86171 0.79455 0.80267 0.79629 1.20279 1.20754 1.19684 1.21409 1.01709 0.96331 0.94323 1.22307 0.90631 0.97541 0.97692 1.61926 1.29145 1.18495 1.16369 1.22648 1.01780 0.96668 0.89344 1.22175 0.99764 0.98424 0.79469 1.92775 1.88254 1.95856 1.42946 1.22160 1.00313 0.89918 0.94494 1.21401 0.96635 1.00107 0.95687 0.92677 0.92230 0.90810 0.90452 0.90414 0.91355 0.90228 0.89456 0.89412 0.92204 0.90837 0.90383 0.90217 0.94356 0.89387 0.93701 0.90480 0.89693 0.90398 0.94372 0.90444 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.10 37.16 0.34 -1.63 16 2 C 0.14 1.63 3.07 -66.83 -0.21 1.42 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.12 -0.97 4.56 -25.25 -0.12 -1.08 16 5 C -0.07 -0.56 0.54 -154.01 -0.08 -0.64 16 6 C 0.11 1.18 5.61 -2.78 -0.02 1.17 16 7 N -0.62 -8.72 3.06 -163.14 -0.50 -9.22 16 8 C 0.55 10.50 7.66 -10.99 -0.08 10.41 16 9 O -0.51 -11.79 14.89 5.56 0.08 -11.70 16 10 C -0.15 -3.01 5.17 36.00 0.19 -2.82 16 11 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 12 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 16 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.10 -0.62 4.85 -27.05 -0.13 -0.75 16 21 C 0.05 0.26 4.72 -3.73 -0.02 0.24 16 22 N -0.53 -3.49 4.78 -234.41 -1.12 -4.61 16 23 C 0.02 0.14 5.73 -3.82 -0.02 0.12 16 24 C 0.06 0.31 6.80 37.16 0.25 0.56 16 25 F -0.22 -1.78 17.36 2.25 0.04 -1.74 16 26 C 0.06 0.41 5.27 -3.74 -0.02 0.39 16 27 C -0.10 -0.83 4.87 -27.06 -0.13 -0.96 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.14 6.87 -51.93 -0.36 0.78 16 31 H 0.08 0.56 6.33 -51.93 -0.33 0.23 16 32 H 0.08 0.57 7.63 -51.93 -0.40 0.17 16 33 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 34 H 0.08 0.86 7.40 -51.93 -0.38 0.47 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.68 7.86 -51.91 -0.41 1.27 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 39 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.08 0.36 5.77 -51.93 -0.30 0.06 16 41 H 0.04 0.22 7.59 -51.93 -0.39 -0.18 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 44 H 0.08 0.33 6.19 -51.93 -0.32 0.01 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.04 0.26 6.55 -51.93 -0.34 -0.08 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.73 7.78 -51.93 -0.40 0.32 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -33.84 391.17 -10.19 -44.03 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -8.23 Total: -3.18 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 0.15 Total: -6.51 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.89 Total: -39.30 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.84 -10.19 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691958604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.776 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds