Wall clock time and date at job start Wed Apr 1 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99850 * 2 1 3 5 5 N 1.46900 * 109.47045 * 185.00150 * 4 2 1 6 6 C 1.46903 * 110.99793 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46991 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47018 * 180.02562 * 7 6 5 9 9 C 1.47054 * 125.40782 * 269.72124 * 8 7 6 10 10 C 1.54098 * 103.86022 * 179.86981 * 9 8 7 11 11 N 1.47052 * 103.86508 * 0.37423 * 10 9 8 12 12 C 1.33943 * 125.41206 * 90.02218 * 8 7 6 13 13 O 1.21586 * 123.04260 * 359.97438 * 12 8 7 14 14 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 15 15 C 1.46499 * 119.99936 * 60.00125 * 14 2 1 16 16 C 1.34773 * 119.99969 * 239.72090 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 S 1.80989 * 109.47203 * 180.02562 * 18 16 14 20 20 C 1.76206 * 100.00010 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99621 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99924 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47269 * 119.99682 * 24 22 20 27 27 H 1.48497 * 109.47235 * 239.99840 * 24 22 20 28 28 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46934 * 305.00116 * 4 2 1 32 32 H 1.09000 * 109.46875 * 64.99867 * 4 2 1 33 33 H 1.00894 * 111.00007 * 303.95013 * 5 4 2 34 34 H 1.09001 * 109.47244 * 299.99947 * 6 5 4 35 35 H 1.09001 * 109.47140 * 59.99722 * 6 5 4 36 36 H 1.08992 * 109.47455 * 299.99608 * 7 6 5 37 37 H 1.09001 * 109.47136 * 60.00371 * 7 6 5 38 38 H 1.09007 * 110.54748 * 298.59267 * 9 8 7 39 39 H 1.08999 * 110.54791 * 61.40398 * 9 8 7 40 40 H 1.09000 * 110.75931 * 241.67433 * 10 9 8 41 41 H 1.09003 * 110.46391 * 118.92879 * 10 9 8 42 42 H 0.96996 * 125.41680 * 179.76113 * 11 10 9 43 43 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 44 44 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 45 45 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 46 46 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 47 47 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 48 48 H 0.97004 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0303 -1.5160 -2.3760 7 6 5.5545 -1.6058 -2.2791 8 7 6.0794 -2.2927 -3.4620 9 6 6.2921 -3.7429 -3.5808 10 6 6.8462 -3.9191 -5.0079 11 7 6.8955 -2.5485 -5.5384 12 6 6.4472 -1.6989 -4.6049 13 8 6.3796 -0.4975 -4.7795 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4281 16 6 2.7977 -0.0372 2.0805 17 8 3.0946 1.1226 1.8863 18 6 3.3005 -0.7477 3.3108 19 16 4.3120 0.3877 4.2923 20 6 4.7548 -0.6732 5.6276 21 1 4.4008 -1.6934 5.6470 22 6 5.5577 -0.1975 6.6550 23 7 5.9887 1.0460 6.6316 24 14 6.0265 -1.3221 8.0711 25 1 5.4190 -2.6609 7.8620 26 1 7.5045 -1.4536 8.1303 27 1 5.5293 -0.7460 9.3462 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.9279 0.0825 -1.0823 34 1 3.6094 -2.5200 -2.4293 35 1 3.7557 -0.9590 -3.2718 36 1 5.9751 -0.6017 -2.2262 37 1 5.8295 -2.1626 -1.3833 38 1 7.0168 -4.0851 -2.8419 39 1 5.3491 -4.2782 -3.4697 40 1 6.1788 -4.5377 -5.6078 41 1 7.8453 -4.3539 -4.9778 42 1 7.2037 -2.2992 -6.4237 43 1 2.4156 -2.7377 0.9718 44 1 1.6236 -2.2851 2.5003 45 1 0.6903 -2.3002 0.9847 46 1 2.4529 -1.0864 3.9067 47 1 3.9021 -1.6068 3.0139 48 1 6.5501 1.3783 7.3495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698816538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:11 Heat of formation + Delta-G solvation = -40.554189 kcal Electronic energy + Delta-G solvation = -27871.279687 eV Core-core repulsion = 23895.315343 eV Total energy + Delta-G solvation = -3975.964344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25803 -39.59640 -37.14428 -36.58428 -35.59184 -33.98619 -32.38099 -32.01773 -29.68728 -28.64099 -28.39435 -26.68587 -25.44877 -25.11443 -23.38770 -22.65683 -21.48766 -20.40644 -18.92943 -17.99175 -17.63930 -16.96380 -16.84266 -16.53294 -15.88971 -15.48778 -15.42558 -14.88442 -14.76439 -14.51677 -14.36577 -14.11036 -14.03690 -13.90248 -13.34934 -13.20345 -13.12006 -12.86564 -12.69485 -12.64330 -12.44216 -12.26087 -12.12707 -11.99378 -11.79579 -11.49516 -11.30420 -11.04152 -10.96876 -10.86695 -10.70501 -10.45424 -9.73705 -9.64340 -9.20170 -9.02835 -8.93388 -8.56942 -8.30971 -8.13909 -6.42892 -6.16953 -3.86235 2.22311 2.87184 3.04846 3.23198 3.24626 3.29985 3.34304 3.50101 3.70869 3.96576 4.11097 4.25197 4.44261 4.54349 4.69921 4.88853 4.91374 4.98996 5.03860 5.15617 5.18102 5.20392 5.22999 5.25362 5.30147 5.31085 5.39354 5.46445 5.57224 5.59744 5.68299 5.74346 5.79084 5.87670 5.98142 6.04260 6.10902 6.24573 6.38214 6.73424 6.75747 6.90157 7.18264 7.23656 7.64302 7.73051 8.30631 8.40205 8.74016 9.28447 10.90492 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.002469 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.320132 B =11338.657258 C =13118.990233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.100 0.900 4 C 0.055 3.945 5 N -0.679 5.679 6 C 0.047 3.953 7 C 0.151 3.849 8 N -0.630 5.630 9 C 0.091 3.909 10 C 0.093 3.907 11 N -0.745 5.745 12 C 0.697 3.303 13 O -0.585 6.585 14 N -0.603 5.603 15 C 0.085 3.915 16 C 0.540 3.460 17 O -0.523 6.523 18 C -0.147 4.147 19 S -0.063 6.063 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.349 0.651 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.428 0.572 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -14.590 -23.513 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.076 4.076 5 N -0.311 5.311 6 C -0.084 4.084 7 C 0.029 3.971 8 N -0.369 5.369 9 C -0.033 4.033 10 C -0.033 4.033 11 N -0.407 5.407 12 C 0.397 3.603 13 O -0.462 6.462 14 N -0.338 5.338 15 C -0.059 4.059 16 C 0.328 3.672 17 O -0.398 6.398 18 C -0.297 4.297 19 S 0.163 5.837 20 C -0.680 4.680 21 H 0.090 0.910 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.270 0.730 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.462 -12.629 -23.247 27.014 hybrid contribution -0.035 -1.678 0.030 1.679 sum -5.497 -14.307 -23.217 27.819 Atomic orbital electron populations 1.22095 0.94887 1.02194 1.02620 1.20989 0.93525 0.98155 0.84066 0.88156 1.22306 0.88205 1.00600 0.96462 1.60258 1.05183 1.26731 1.38970 1.22269 0.95093 0.99362 0.91656 1.21172 0.92681 0.98475 0.84798 1.47112 1.67890 1.07252 1.14627 1.22406 1.01864 0.82413 0.96596 1.22338 1.02212 0.85031 0.93694 1.45115 1.70922 1.07247 1.17456 1.15953 0.78170 0.85108 0.81069 1.90982 1.61793 1.12339 1.81134 1.47587 1.51699 1.12178 1.22345 1.21654 1.00092 0.82159 1.01994 1.20197 0.76918 0.86600 0.83489 1.90669 1.56425 1.16858 1.75877 1.23521 1.03971 1.04608 0.97624 1.85387 1.60858 1.15570 1.21842 1.22902 1.36824 0.99845 1.08454 0.90996 1.24986 0.95215 0.95508 0.97943 1.70034 1.33121 1.14444 1.32729 0.86140 0.78286 0.80142 0.81051 1.19647 1.20625 1.20631 0.91710 0.91703 0.92306 0.90935 0.94501 0.83208 0.91177 0.95052 0.89602 0.88883 0.89689 0.89993 0.90045 0.89968 0.73030 0.92588 0.91141 0.91901 0.89649 0.89322 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.17 37.16 0.34 -1.15 16 2 C 0.14 1.63 2.88 -67.93 -0.20 1.43 16 3 H 0.10 1.45 6.90 -51.93 -0.36 1.09 16 4 C 0.05 0.55 4.98 -3.83 -0.02 0.53 16 5 N -0.68 -7.67 6.23 -113.78 -0.71 -8.37 16 6 C 0.05 0.46 6.01 -3.82 -0.02 0.44 16 7 C 0.15 1.55 6.26 -4.04 -0.03 1.52 16 8 N -0.63 -5.96 2.96 -178.81 -0.53 -6.49 16 9 C 0.09 0.48 7.68 -3.17 -0.02 0.45 16 10 C 0.09 0.36 8.06 -3.17 -0.03 0.34 16 11 N -0.74 -5.52 6.37 -64.71 -0.41 -5.93 16 12 C 0.70 8.18 8.60 -88.40 -0.76 7.42 16 13 O -0.58 -9.65 17.53 5.29 0.09 -9.56 16 14 N -0.60 -8.37 2.49 -173.93 -0.43 -8.80 16 15 C 0.08 0.91 9.40 59.85 0.56 1.47 16 16 C 0.54 10.25 7.69 -10.98 -0.08 10.16 16 17 O -0.52 -11.89 15.19 5.56 0.08 -11.80 16 18 C -0.15 -3.02 4.71 36.01 0.17 -2.85 16 19 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 20 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 31 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.35 4.50 8.73 -39.29 -0.34 4.16 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.43 2.48 8.96 -40.82 -0.37 2.11 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.78 6.45 -51.93 -0.33 0.44 16 45 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 46 H 0.09 1.64 7.41 -51.91 -0.38 1.26 16 47 H 0.09 1.72 8.10 -51.92 -0.42 1.30 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -38.28 406.94 -10.06 -48.34 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.90 Total: 2.79 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 0.11 Total: 6.81 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -1.35 Total: -55.24 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.28 -10.06 -48.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698816538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds