Wall clock time and date at job start Wed Apr 1 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99850 * 2 1 3 5 5 N 1.46900 * 109.47045 * 185.00150 * 4 2 1 6 6 C 1.46903 * 110.99793 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46991 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.47018 * 180.02562 * 7 6 5 9 9 C 1.47054 * 125.40782 * 269.72124 * 8 7 6 10 10 C 1.54098 * 103.86022 * 179.86981 * 9 8 7 11 11 N 1.47052 * 103.86508 * 0.37423 * 10 9 8 12 12 C 1.33943 * 125.41206 * 90.02218 * 8 7 6 13 13 O 1.21586 * 123.04260 * 359.97438 * 12 8 7 14 14 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 15 15 C 1.46499 * 119.99936 * 60.00125 * 14 2 1 16 16 C 1.34773 * 119.99969 * 239.72090 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 S 1.80989 * 109.47203 * 180.02562 * 18 16 14 20 20 C 1.76206 * 100.00010 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99621 * 359.97438 * 20 19 18 22 22 C 1.38794 * 119.99924 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47269 * 119.99682 * 24 22 20 27 27 H 1.48497 * 109.47235 * 239.99840 * 24 22 20 28 28 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46934 * 305.00116 * 4 2 1 32 32 H 1.09000 * 109.46875 * 64.99867 * 4 2 1 33 33 H 1.00894 * 111.00007 * 303.95013 * 5 4 2 34 34 H 1.09001 * 109.47244 * 299.99947 * 6 5 4 35 35 H 1.09001 * 109.47140 * 59.99722 * 6 5 4 36 36 H 1.08992 * 109.47455 * 299.99608 * 7 6 5 37 37 H 1.09001 * 109.47136 * 60.00371 * 7 6 5 38 38 H 1.09007 * 110.54748 * 298.59267 * 9 8 7 39 39 H 1.08999 * 110.54791 * 61.40398 * 9 8 7 40 40 H 1.09000 * 110.75931 * 241.67433 * 10 9 8 41 41 H 1.09003 * 110.46391 * 118.92879 * 10 9 8 42 42 H 0.96996 * 125.41680 * 179.76113 * 11 10 9 43 43 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 44 44 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 45 45 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 46 46 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 47 47 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 48 48 H 0.97004 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0303 -1.5160 -2.3760 7 6 5.5545 -1.6058 -2.2791 8 7 6.0794 -2.2927 -3.4620 9 6 6.2921 -3.7429 -3.5808 10 6 6.8462 -3.9191 -5.0079 11 7 6.8955 -2.5485 -5.5384 12 6 6.4472 -1.6989 -4.6049 13 8 6.3796 -0.4975 -4.7795 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4281 16 6 2.7977 -0.0372 2.0805 17 8 3.0946 1.1226 1.8863 18 6 3.3005 -0.7477 3.3108 19 16 4.3120 0.3877 4.2923 20 6 4.7548 -0.6732 5.6276 21 1 4.4008 -1.6934 5.6470 22 6 5.5577 -0.1975 6.6550 23 7 5.9887 1.0460 6.6316 24 14 6.0265 -1.3221 8.0711 25 1 5.4190 -2.6609 7.8620 26 1 7.5045 -1.4536 8.1303 27 1 5.5293 -0.7460 9.3462 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1369 33 1 3.9279 0.0825 -1.0823 34 1 3.6094 -2.5200 -2.4293 35 1 3.7557 -0.9590 -3.2718 36 1 5.9751 -0.6017 -2.2262 37 1 5.8295 -2.1626 -1.3833 38 1 7.0168 -4.0851 -2.8419 39 1 5.3491 -4.2782 -3.4697 40 1 6.1788 -4.5377 -5.6078 41 1 7.8453 -4.3539 -4.9778 42 1 7.2037 -2.2992 -6.4237 43 1 2.4156 -2.7377 0.9718 44 1 1.6236 -2.2851 2.5003 45 1 0.6903 -2.3002 0.9847 46 1 2.4529 -1.0864 3.9067 47 1 3.9021 -1.6068 3.0139 48 1 6.5501 1.3783 7.3495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698816538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:10 Heat of formation + Delta-G solvation = -70.934146 kcal Electronic energy + Delta-G solvation = -27872.597061 eV Core-core repulsion = 23895.315343 eV Total energy + Delta-G solvation = -3977.281718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96878 -40.89347 -38.20978 -37.47281 -36.60478 -34.83564 -34.55513 -33.05652 -30.42056 -29.99540 -29.13494 -27.69808 -27.61641 -25.94544 -23.86972 -23.45466 -22.61933 -21.21461 -20.22227 -19.51162 -18.69494 -18.21201 -17.55688 -17.42017 -16.90278 -16.84623 -16.68710 -16.45071 -15.96768 -15.68460 -15.38299 -15.14439 -14.84118 -14.75331 -14.50232 -14.39836 -14.34405 -13.92717 -13.77862 -13.43899 -13.32811 -13.13675 -13.04139 -13.01901 -12.93668 -12.88770 -12.78115 -12.53942 -12.39187 -12.15326 -11.77928 -11.63557 -11.43199 -11.13214 -10.73038 -10.41487 -10.20254 -9.59624 -9.48143 -9.39761 -8.62451 -8.31650 -6.08996 1.30383 1.42942 1.49916 1.54343 1.60687 1.75376 2.02285 2.22985 2.31909 2.94096 3.02320 3.27414 3.35710 3.59716 3.72970 3.83152 3.97828 4.04299 4.17653 4.24297 4.30571 4.33276 4.38784 4.42618 4.46829 4.54817 4.60092 4.66655 4.70793 4.74767 4.81945 4.82855 4.88479 4.99325 5.02906 5.08274 5.12207 5.29472 5.44607 5.63211 5.73115 6.02057 6.14978 6.22197 6.22947 6.45570 6.49818 7.09544 7.32532 7.50815 8.77823 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.002469 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.320132 B =11338.657258 C =13118.990233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 H 0.066 0.934 4 C 0.062 3.938 5 N -0.689 5.689 6 C 0.062 3.938 7 C 0.154 3.846 8 N -0.632 5.632 9 C 0.084 3.916 10 C 0.093 3.907 11 N -0.736 5.736 12 C 0.682 3.318 13 O -0.647 6.647 14 N -0.587 5.587 15 C 0.076 3.924 16 C 0.536 3.464 17 O -0.573 6.573 18 C -0.118 4.118 19 S -0.156 6.156 20 C -0.541 4.541 21 H 0.082 0.918 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.334 0.666 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.434 0.566 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 -19.141 -24.165 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.084 0.916 4 C -0.068 4.068 5 N -0.320 5.320 6 C -0.068 4.068 7 C 0.031 3.969 8 N -0.370 5.370 9 C -0.038 4.038 10 C -0.030 4.030 11 N -0.398 5.398 12 C 0.382 3.618 13 O -0.529 6.529 14 N -0.319 5.319 15 C -0.066 4.066 16 C 0.324 3.676 17 O -0.452 6.452 18 C -0.269 4.269 19 S 0.071 5.929 20 C -0.689 4.689 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.821 3.179 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.151 0.849 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.277 0.723 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.864 -17.299 -23.946 30.328 hybrid contribution 0.327 -0.336 0.106 0.481 sum -6.537 -17.635 -23.841 30.366 Atomic orbital electron populations 1.22041 0.92316 1.03827 1.02767 1.21162 0.95378 0.96560 0.83929 0.91553 1.22297 0.87363 1.01699 0.95446 1.60352 1.06066 1.25929 1.39657 1.22153 0.94600 0.99806 0.90271 1.21043 0.93052 0.97201 0.85616 1.47159 1.67132 1.09144 1.13527 1.22770 1.03505 0.79644 0.97858 1.22654 1.04189 0.83224 0.92969 1.45138 1.69438 1.08234 1.16978 1.16350 0.78421 0.84749 0.82253 1.90925 1.64403 1.15215 1.82406 1.47569 1.49452 1.13381 1.21544 1.21956 1.02312 0.79811 1.02523 1.19970 0.77691 0.86056 0.83879 1.90656 1.58725 1.18913 1.76946 1.23326 1.03226 1.02900 0.97491 1.85600 1.63279 1.19901 1.24078 1.23214 1.37004 1.00067 1.08600 0.89996 1.26142 0.94894 0.97182 1.01100 1.70204 1.34021 1.16769 1.33962 0.84903 0.78058 0.78262 0.76702 1.17850 1.19991 1.20018 0.93329 0.89906 0.89802 0.88457 0.93609 0.84887 0.88969 0.96817 0.92903 0.88020 0.88494 0.87868 0.87312 0.87799 0.72321 0.91398 0.91280 0.88435 0.87948 0.87854 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.17 71.98 0.66 -1.79 16 2 C 0.13 3.02 2.88 44.99 0.13 3.15 16 3 H 0.07 1.99 6.90 -2.39 -0.02 1.98 16 4 C 0.06 1.11 4.98 86.30 0.43 1.54 16 5 N -0.69 -15.19 6.23 -513.89 -3.20 -18.39 16 6 C 0.06 1.17 6.01 86.30 0.52 1.69 16 7 C 0.15 3.20 6.26 86.38 0.54 3.74 16 8 N -0.63 -11.55 2.96 -838.37 -2.48 -14.02 16 9 C 0.08 0.65 7.68 86.65 0.67 1.31 16 10 C 0.09 0.44 8.06 86.65 0.70 1.14 16 11 N -0.74 -10.03 6.37 -477.35 -3.04 -13.08 16 12 C 0.68 16.23 8.60 179.57 1.54 17.77 16 13 O -0.65 -22.72 17.53 -3.99 -0.07 -22.79 16 14 N -0.59 -15.47 2.49 -822.59 -2.04 -17.51 16 15 C 0.08 1.36 9.40 127.77 1.20 2.56 16 16 C 0.54 20.58 7.69 87.66 0.67 21.26 16 17 O -0.57 -27.39 15.19 -3.03 -0.05 -27.43 16 18 C -0.12 -4.85 4.71 71.24 0.34 -4.52 16 19 S -0.16 -8.85 20.57 -56.49 -1.16 -10.02 16 20 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.65 5.49 84.86 0.47 1.11 16 23 N -0.91 -56.89 13.22 21.65 0.29 -56.61 16 24 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 25 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 0.95 6.66 -2.39 -0.02 0.94 16 31 H 0.10 1.31 7.84 -2.39 -0.02 1.29 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.33 9.13 8.73 -89.70 -0.78 8.35 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.05 1.44 7.91 -2.39 -0.02 1.42 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.11 -0.01 8.14 -2.39 -0.02 -0.02 16 41 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.43 4.66 8.96 -92.71 -0.83 3.83 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.30 6.45 -2.39 -0.02 1.28 16 45 H 0.10 1.12 6.43 -2.38 -0.02 1.10 16 46 H 0.10 3.83 7.41 -2.39 -0.02 3.81 16 47 H 0.10 3.91 8.10 -2.40 -0.02 3.89 16 48 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -90.03 406.94 -1.86 -91.89 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.64 Total: 23.65 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 8.51 Total: 18.37 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -10.48 Total: -119.60 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.12 Total: -50.22 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.02 kcal Total: -90.03 -1.86 -91.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698816538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.953 kcal (2) G-P(sol) polarization free energy of solvation -90.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds