Wall clock time and date at job start Wed Apr 1 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46896 * 109.47369 * 174.99684 * 4 2 1 6 6 C 1.46911 * 110.99927 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46941 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46695 * 180.02562 * 7 6 5 9 9 C 1.47055 * 125.40927 * 269.71600 * 8 7 6 10 10 C 1.54099 * 103.86167 * 179.87410 * 9 8 7 11 11 N 1.47061 * 103.86504 * 0.37438 * 10 9 8 12 12 C 1.33947 * 109.17458 * 359.75325 * 11 10 9 13 13 O 1.21587 * 123.03924 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47125 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47190 * 120.00136 * 24 22 20 27 27 H 1.48496 * 109.47312 * 240.00041 * 24 22 20 28 28 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 29 29 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 1.00906 * 110.99975 * 56.05175 * 5 4 2 34 34 H 1.09001 * 109.46724 * 300.00317 * 6 5 4 35 35 H 1.09001 * 109.46776 * 60.00392 * 6 5 4 36 36 H 1.09002 * 109.46935 * 299.99843 * 7 6 5 37 37 H 1.09001 * 109.46907 * 60.00090 * 7 6 5 38 38 H 1.08997 * 110.54655 * 298.59861 * 9 8 7 39 39 H 1.08999 * 110.54656 * 61.40601 * 9 8 7 40 40 H 1.08996 * 110.75904 * 241.67898 * 10 9 8 41 41 H 1.09001 * 110.46576 * 118.92550 * 10 9 8 42 42 H 0.96994 * 125.40936 * 179.75304 * 11 10 9 43 43 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 44 44 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 45 45 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 46 46 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 47 47 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 48 48 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8268 1.1902 6 6 4.0304 -1.5151 2.3766 7 6 5.5547 -1.6050 2.2796 8 7 6.0795 -2.2919 3.4623 9 6 6.4883 -1.6394 4.7152 10 6 6.9498 -2.8086 5.6068 11 7 6.7607 -3.9947 4.7583 12 6 6.2687 -3.6134 3.5723 13 8 6.0162 -4.3960 2.6767 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 5.4061 -2.6560 -7.8700 26 1 5.4983 -0.7448 -9.3595 27 1 7.4831 -1.4351 -8.1493 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9280 0.0825 1.0823 34 1 3.7558 -0.9573 3.2719 35 1 3.6096 -2.5191 2.4306 36 1 5.8295 -2.1625 1.3842 37 1 5.9751 -0.6007 2.2257 38 1 7.3095 -0.9458 4.5351 39 1 5.6434 -1.1234 5.1712 40 1 6.3337 -2.8773 6.5033 41 1 8.0003 -2.6927 5.8737 42 1 6.9606 -4.9081 5.0165 43 1 2.4158 -2.7376 -0.9719 44 1 0.6904 -2.3001 -0.9849 45 1 1.6238 -2.2850 -2.5004 46 1 3.9044 -1.5994 -3.0178 47 1 2.4471 -1.0921 -3.9049 48 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698816539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:15 Heat of formation + Delta-G solvation = -39.627597 kcal Electronic energy + Delta-G solvation = -27912.895038 eV Core-core repulsion = 23936.970874 eV Total energy + Delta-G solvation = -3975.924164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24511 -39.57850 -37.15177 -36.55999 -35.58088 -33.98040 -32.35175 -32.00332 -29.69293 -28.61843 -28.38414 -26.64180 -25.42025 -25.11538 -23.37881 -22.69884 -21.47498 -20.38784 -18.91165 -17.97898 -17.61312 -17.00230 -16.78620 -16.45124 -16.05298 -15.46142 -15.15416 -15.05937 -14.73451 -14.53570 -14.37568 -14.06727 -14.01975 -13.88172 -13.34832 -13.17996 -13.09627 -12.82602 -12.70475 -12.67057 -12.43911 -12.21781 -12.09784 -11.97643 -11.76433 -11.46011 -11.33151 -11.01068 -10.93885 -10.85466 -10.67393 -10.41480 -9.70708 -9.61866 -9.18394 -8.99871 -8.94643 -8.55507 -8.28286 -8.11860 -6.40092 -6.14408 -3.83276 2.22491 2.89897 3.07692 3.25467 3.27280 3.32872 3.37728 3.50624 3.73831 3.94804 4.09625 4.28328 4.41294 4.53577 4.70439 4.87047 4.89691 4.95695 5.03158 5.15484 5.18844 5.20851 5.23137 5.26822 5.27081 5.31361 5.35699 5.48481 5.58953 5.63603 5.72079 5.75883 5.85496 5.96607 5.99603 6.06940 6.12378 6.30102 6.38777 6.75369 6.76730 6.91368 7.19464 7.24478 7.67709 7.75417 8.33436 8.43468 8.75679 9.31370 10.93112 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.002540 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.505924 B =11019.856842 C =12908.173723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.100 0.900 4 C 0.055 3.945 5 N -0.678 5.678 6 C 0.048 3.952 7 C 0.151 3.849 8 N -0.631 5.631 9 C 0.090 3.910 10 C 0.093 3.907 11 N -0.745 5.745 12 C 0.697 3.303 13 O -0.579 6.579 14 N -0.602 5.602 15 C 0.083 3.917 16 C 0.541 3.459 17 O -0.526 6.526 18 C -0.148 4.148 19 S -0.064 6.064 20 C -0.531 4.531 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.346 0.654 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.429 0.571 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -6.112 28.212 29.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.075 4.075 5 N -0.310 5.310 6 C -0.083 4.083 7 C 0.029 3.971 8 N -0.370 5.370 9 C -0.033 4.033 10 C -0.032 4.032 11 N -0.408 5.408 12 C 0.397 3.603 13 O -0.456 6.456 14 N -0.337 5.337 15 C -0.061 4.061 16 C 0.330 3.670 17 O -0.401 6.401 18 C -0.298 4.298 19 S 0.163 5.837 20 C -0.679 4.679 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.270 0.730 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.682 -5.128 27.412 28.278 hybrid contribution -0.030 -1.804 -0.080 1.806 sum -4.713 -6.933 27.332 28.589 Atomic orbital electron populations 1.22099 0.94906 1.02265 1.02563 1.20980 0.93530 0.98041 0.84138 0.88204 1.22314 0.88128 1.00734 0.96356 1.60188 1.05194 1.26346 1.39256 1.22286 0.95244 0.99737 0.90985 1.21171 0.92536 0.97323 0.86101 1.47106 1.68083 1.06113 1.15702 1.22395 1.00739 0.95835 0.84382 1.22319 1.02222 0.84323 0.94362 1.45122 1.70825 1.09846 1.15014 1.15941 0.78366 0.82986 0.83008 1.91006 1.58384 1.54627 1.41610 1.47578 1.51783 1.12186 1.22186 1.21680 1.00215 0.82093 1.02064 1.20186 0.76825 0.86575 0.83457 1.90652 1.56708 1.16659 1.76105 1.23532 1.03994 1.04687 0.97605 1.85310 1.61690 1.15221 1.21494 1.22914 1.37172 0.99639 1.08189 0.90964 1.24980 0.95186 0.95517 0.97959 1.70033 1.33578 1.14282 1.32564 0.86137 0.78301 0.80204 0.80982 1.19608 1.20653 1.20617 0.91701 0.92260 0.91747 0.94606 0.90841 0.83516 0.95594 0.90740 0.88438 0.90055 0.89833 0.90176 0.90081 0.90000 0.72994 0.92351 0.91887 0.91099 0.89209 0.89610 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.17 37.16 0.34 -1.17 16 2 C 0.14 1.63 2.88 -67.93 -0.20 1.44 16 3 H 0.10 1.39 6.90 -51.93 -0.36 1.04 16 4 C 0.06 0.55 4.98 -3.83 -0.02 0.53 16 5 N -0.68 -7.64 6.23 -113.77 -0.71 -8.35 16 6 C 0.05 0.47 6.01 -3.82 -0.02 0.45 16 7 C 0.15 1.54 6.26 -4.04 -0.03 1.52 16 8 N -0.63 -5.97 2.96 -178.82 -0.53 -6.50 16 9 C 0.09 0.46 7.68 -3.17 -0.02 0.43 16 10 C 0.09 0.36 8.06 -3.16 -0.03 0.33 16 11 N -0.75 -5.59 6.37 -64.70 -0.41 -6.01 16 12 C 0.70 8.31 8.60 -88.40 -0.76 7.55 16 13 O -0.58 -9.81 17.53 5.29 0.09 -9.72 16 14 N -0.60 -8.70 2.48 -173.93 -0.43 -9.14 16 15 C 0.08 0.99 9.40 59.84 0.56 1.55 16 16 C 0.54 10.49 7.69 -10.98 -0.08 10.41 16 17 O -0.53 -11.92 15.19 5.56 0.08 -11.84 16 18 C -0.15 -3.14 4.71 36.01 0.17 -2.97 16 19 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 20 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 21 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 24 Si 0.92 21.97 29.55 -169.99 -5.02 16.94 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.35 4.06 8.73 -39.29 -0.34 3.71 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.29 7.91 -51.93 -0.41 0.88 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.43 2.54 8.96 -40.82 -0.37 2.17 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 45 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 46 H 0.09 1.85 8.11 -51.92 -0.42 1.42 16 47 H 0.09 1.71 7.39 -51.92 -0.38 1.32 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 406.93 15.07 6.13 6.13 Total: -1.00 -38.79 406.93 -10.06 -48.85 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.90 Total: 2.65 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 0.11 Total: 6.88 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -1.35 Total: -55.91 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.18 Total: -21.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.79 -10.06 -48.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698816539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.225 kcal (2) G-P(sol) polarization free energy of solvation -38.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds