Wall clock time and date at job start Wed Apr 1 2020 03:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46896 * 109.47369 * 174.99684 * 4 2 1 6 6 C 1.46911 * 110.99927 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46941 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46695 * 180.02562 * 7 6 5 9 9 C 1.47055 * 125.40927 * 269.71600 * 8 7 6 10 10 C 1.54099 * 103.86167 * 179.87410 * 9 8 7 11 11 N 1.47061 * 103.86504 * 0.37438 * 10 9 8 12 12 C 1.33947 * 109.17458 * 359.75325 * 11 10 9 13 13 O 1.21587 * 123.03924 * 180.02562 * 12 11 10 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47125 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47190 * 120.00136 * 24 22 20 27 27 H 1.48496 * 109.47312 * 240.00041 * 24 22 20 28 28 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 29 29 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 1.00906 * 110.99975 * 56.05175 * 5 4 2 34 34 H 1.09001 * 109.46724 * 300.00317 * 6 5 4 35 35 H 1.09001 * 109.46776 * 60.00392 * 6 5 4 36 36 H 1.09002 * 109.46935 * 299.99843 * 7 6 5 37 37 H 1.09001 * 109.46907 * 60.00090 * 7 6 5 38 38 H 1.08997 * 110.54655 * 298.59861 * 9 8 7 39 39 H 1.08999 * 110.54656 * 61.40601 * 9 8 7 40 40 H 1.08996 * 110.75904 * 241.67898 * 10 9 8 41 41 H 1.09001 * 110.46576 * 118.92550 * 10 9 8 42 42 H 0.96994 * 125.40936 * 179.75304 * 11 10 9 43 43 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 44 44 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 45 45 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 46 46 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 47 47 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 48 48 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8268 1.1902 6 6 4.0304 -1.5151 2.3766 7 6 5.5547 -1.6050 2.2796 8 7 6.0795 -2.2919 3.4623 9 6 6.4883 -1.6394 4.7152 10 6 6.9498 -2.8086 5.6068 11 7 6.7607 -3.9947 4.7583 12 6 6.2687 -3.6134 3.5723 13 8 6.0162 -4.3960 2.6767 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 5.4061 -2.6560 -7.8700 26 1 5.4983 -0.7448 -9.3595 27 1 7.4831 -1.4351 -8.1493 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9280 0.0825 1.0823 34 1 3.7558 -0.9573 3.2719 35 1 3.6096 -2.5191 2.4306 36 1 5.8295 -2.1625 1.3842 37 1 5.9751 -0.6007 2.2257 38 1 7.3095 -0.9458 4.5351 39 1 5.6434 -1.1234 5.1712 40 1 6.3337 -2.8773 6.5033 41 1 8.0003 -2.6927 5.8737 42 1 6.9606 -4.9081 5.0165 43 1 2.4158 -2.7376 -0.9719 44 1 0.6904 -2.3001 -0.9849 45 1 1.6238 -2.2850 -2.5004 46 1 3.9044 -1.5994 -3.0178 47 1 2.4471 -1.0921 -3.9049 48 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698816539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:14 Heat of formation + Delta-G solvation = -70.413949 kcal Electronic energy + Delta-G solvation = -27914.230035 eV Core-core repulsion = 23936.970874 eV Total energy + Delta-G solvation = -3977.259161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95812 -40.91257 -38.21893 -37.45957 -36.61144 -34.84139 -34.57525 -33.06449 -30.43129 -30.01437 -29.13117 -27.74622 -27.63995 -25.94671 -23.84929 -23.50723 -22.62754 -21.19878 -20.23986 -19.53236 -18.68839 -18.23693 -17.60370 -17.21992 -17.12346 -16.87557 -16.71899 -16.34462 -15.90989 -15.78165 -15.39484 -15.13021 -14.84340 -14.74928 -14.56622 -14.41487 -14.27945 -13.94709 -13.80076 -13.47017 -13.34531 -13.16188 -13.11652 -13.01709 -12.95910 -12.90387 -12.77886 -12.56957 -12.36917 -12.17804 -11.77907 -11.65236 -11.40614 -11.14826 -10.74900 -10.40098 -10.24561 -9.62072 -9.48287 -9.33694 -8.63802 -8.33925 -6.10721 1.28373 1.40736 1.47051 1.54594 1.59056 1.72250 2.04236 2.21169 2.29766 2.95298 2.99765 3.26918 3.33935 3.58752 3.72427 3.83515 3.95100 4.04049 4.16718 4.23003 4.26656 4.32888 4.34678 4.41988 4.43471 4.52126 4.58970 4.63730 4.70858 4.75388 4.75789 4.81987 4.89234 4.98287 4.98541 5.11333 5.11665 5.29544 5.42676 5.63634 5.71302 6.04180 6.16512 6.20934 6.34273 6.41498 6.50761 7.07450 7.28903 7.52699 8.75600 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.002540 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.505924 B =11019.856842 C =12908.173723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.076 0.924 4 C 0.063 3.937 5 N -0.698 5.698 6 C 0.064 3.936 7 C 0.153 3.847 8 N -0.633 5.633 9 C 0.084 3.916 10 C 0.093 3.907 11 N -0.737 5.737 12 C 0.683 3.317 13 O -0.644 6.644 14 N -0.587 5.587 15 C 0.078 3.922 16 C 0.539 3.461 17 O -0.568 6.568 18 C -0.123 4.123 19 S -0.146 6.146 20 C -0.545 4.545 21 H 0.078 0.922 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.342 0.658 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.434 0.566 43 H 0.056 0.944 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -7.239 30.415 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.094 0.906 4 C -0.067 4.067 5 N -0.330 5.330 6 C -0.066 4.066 7 C 0.030 3.970 8 N -0.371 5.371 9 C -0.038 4.038 10 C -0.030 4.030 11 N -0.399 5.399 12 C 0.383 3.617 13 O -0.526 6.526 14 N -0.320 5.320 15 C -0.065 4.065 16 C 0.327 3.673 17 O -0.447 6.447 18 C -0.274 4.274 19 S 0.082 5.918 20 C -0.693 4.693 21 H 0.096 0.904 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.183 1.183 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.277 0.723 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.715 -6.261 29.716 30.902 hybrid contribution 0.242 -1.458 -0.600 1.595 sum -5.473 -7.719 29.117 30.616 Atomic orbital electron populations 1.22050 0.92410 1.03549 1.03023 1.21228 0.95350 0.96794 0.83640 0.90582 1.22275 0.87272 1.01190 0.95964 1.60183 1.06163 1.26248 1.40449 1.22091 0.94473 0.98724 0.91357 1.21040 0.93250 0.97337 0.85344 1.47153 1.67432 1.05681 1.16802 1.22766 1.02136 0.96456 0.82460 1.22644 1.04249 0.81952 0.94179 1.45144 1.69290 1.11363 1.14074 1.16342 0.78528 0.83383 0.83490 1.90942 1.61224 1.56391 1.44053 1.47572 1.49663 1.13028 1.21753 1.21888 1.01999 0.80200 1.02394 1.19860 0.77630 0.86091 0.83722 1.90635 1.58734 1.18289 1.77019 1.23356 1.03268 1.02967 0.97808 1.85421 1.63890 1.19086 1.23430 1.23215 1.37638 0.99817 1.08628 0.90413 1.26100 0.94790 0.97211 1.00987 1.70183 1.34300 1.16418 1.33782 0.84929 0.78115 0.78159 0.76888 1.18332 1.19655 1.19873 0.93266 0.90475 0.89335 0.92168 0.90017 0.83978 0.93222 0.92672 0.92482 0.88375 0.88414 0.88055 0.87371 0.87779 0.72319 0.92498 0.88382 0.91275 0.88607 0.88068 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.17 71.98 0.66 -1.81 16 2 C 0.13 2.99 2.88 44.99 0.13 3.12 16 3 H 0.08 2.12 6.90 -2.38 -0.02 2.10 16 4 C 0.06 1.12 4.98 86.30 0.43 1.55 16 5 N -0.70 -15.31 6.23 -513.86 -3.20 -18.51 16 6 C 0.06 1.21 6.01 86.30 0.52 1.73 16 7 C 0.15 3.18 6.26 86.38 0.54 3.72 16 8 N -0.63 -11.58 2.96 -838.38 -2.48 -14.06 16 9 C 0.08 0.62 7.68 86.65 0.67 1.28 16 10 C 0.09 0.43 8.06 86.64 0.70 1.13 16 11 N -0.74 -10.19 6.37 -477.33 -3.04 -13.23 16 12 C 0.68 16.45 8.60 179.57 1.54 17.99 16 13 O -0.64 -23.06 17.53 -3.99 -0.07 -23.13 16 14 N -0.59 -16.54 2.48 -822.60 -2.04 -18.59 16 15 C 0.08 1.71 9.40 127.77 1.20 2.91 16 16 C 0.54 21.29 7.69 87.66 0.67 21.97 16 17 O -0.57 -26.75 15.19 -3.04 -0.05 -26.79 16 18 C -0.12 -5.33 4.71 71.24 0.34 -4.99 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -32.43 9.50 67.95 0.65 -31.79 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -57.14 13.22 21.65 0.29 -56.85 16 24 Si 1.00 45.23 29.55 68.60 2.03 47.26 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.08 0.99 6.66 -2.39 -0.02 0.97 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.35 7.84 -2.38 -0.02 1.34 16 33 H 0.34 8.00 8.73 -89.69 -0.78 7.22 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.64 7.91 -2.39 -0.02 1.62 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.43 4.77 8.96 -92.71 -0.83 3.94 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.51 6.43 -2.39 -0.02 1.49 16 45 H 0.07 1.57 6.43 -2.38 -0.02 1.56 16 46 H 0.10 4.00 8.11 -2.39 -0.02 3.98 16 47 H 0.10 4.03 7.39 -2.40 -0.02 4.01 16 48 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -90.34 406.93 -1.86 -92.20 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.64 Total: 23.19 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 8.51 Total: 18.09 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -10.48 Total: -121.24 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.12 Total: -49.92 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -90.34 -1.86 -92.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698816539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.784 kcal (2) G-P(sol) polarization free energy of solvation -90.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds