Wall clock time and date at job start Wed Apr 1 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 110.99884 * 2 1 4 4 C 1.53001 * 109.46901 * 293.95355 * 3 2 1 5 5 N 1.46503 * 109.46667 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00275 * 89.99889 * 5 4 3 7 7 C 1.34776 * 120.00055 * 269.99680 * 5 4 3 8 8 O 1.21283 * 119.99747 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00165 * 180.02562 * 7 5 4 10 10 S 1.81004 * 109.46959 * 180.02562 * 9 7 5 11 11 C 1.76194 * 99.99699 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00520 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00197 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99772 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00449 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47510 * 89.99973 * 15 13 11 17 17 H 1.48505 * 109.47279 * 210.00136 * 15 13 11 18 18 H 1.48505 * 109.46975 * 330.00001 * 15 13 11 19 19 C 1.46902 * 111.00027 * 123.95265 * 2 1 3 20 20 C 1.52999 * 109.47112 * 66.04858 * 19 2 1 21 21 N 1.46497 * 109.47130 * 179.97438 * 20 19 2 22 22 C 1.47057 * 125.40952 * 90.00073 * 21 20 19 23 23 C 1.54105 * 103.99235 * 179.97438 * 22 21 20 24 24 N 1.47394 * 103.70056 * 0.10684 * 23 22 21 25 25 C 1.33947 * 109.21036 * 359.88525 * 24 23 22 26 26 O 1.21594 * 123.03846 * 180.09410 * 25 24 23 27 27 H 1.09005 * 109.47337 * 296.04282 * 1 2 3 28 28 H 1.08999 * 109.47372 * 56.04752 * 1 2 3 29 29 H 1.09010 * 109.47249 * 176.04634 * 1 2 3 30 30 H 1.09004 * 109.46836 * 53.95442 * 3 2 1 31 31 H 1.08997 * 109.46931 * 173.95510 * 3 2 1 32 32 H 1.09000 * 109.46967 * 299.99774 * 4 3 2 33 33 H 1.08997 * 109.47202 * 60.00321 * 4 3 2 34 34 H 1.09007 * 109.46699 * 89.99802 * 6 5 4 35 35 H 1.08993 * 109.47424 * 209.99678 * 6 5 4 36 36 H 1.08997 * 109.46966 * 330.00426 * 6 5 4 37 37 H 1.09001 * 109.46967 * 300.00101 * 9 7 5 38 38 H 1.08999 * 109.46812 * 60.00185 * 9 7 5 39 39 H 0.97000 * 120.00070 * 179.97438 * 14 13 11 40 40 H 1.09000 * 109.47307 * 306.04485 * 19 2 1 41 41 H 1.09002 * 109.47269 * 186.04600 * 19 2 1 42 42 H 1.09000 * 109.47340 * 59.99647 * 20 19 2 43 43 H 1.09001 * 109.47326 * 300.00216 * 20 19 2 44 44 H 1.09002 * 110.54831 * 298.59477 * 22 21 20 45 45 H 1.08997 * 110.54826 * 61.25951 * 22 21 20 46 46 H 1.08996 * 110.55034 * 118.66113 * 23 22 21 47 47 H 1.09001 * 110.54910 * 241.47819 * 23 22 21 48 48 H 0.97000 * 125.37712 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 3.5018 3.6928 -1.8338 7 6 1.4030 4.4366 -0.8446 8 8 0.2897 4.2148 -0.4176 9 6 1.9434 5.8435 -0.8453 10 16 0.7044 6.9660 -0.1516 11 6 1.5752 8.4932 -0.2696 12 1 2.5734 8.5153 -0.6813 13 6 0.9778 9.6681 0.1654 14 7 -0.2391 9.6413 0.6666 15 14 1.9006 11.2873 0.0396 16 1 1.6138 11.9199 -1.2729 17 1 1.4624 12.1930 1.1319 18 1 3.3593 11.0364 0.1599 19 6 1.9954 -0.7660 1.1376 20 6 1.6315 -2.2426 0.9704 21 7 2.1570 -3.0065 2.1045 22 6 1.4403 -3.2666 3.3620 23 6 2.4347 -4.1018 4.1918 24 7 3.6105 -4.2212 3.3110 25 6 3.3670 -3.5783 2.1613 26 8 4.1715 -3.5194 1.2515 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 1.5610 1.9273 0.8310 31 1 3.0796 1.3444 0.1082 32 1 2.0657 1.5015 -2.1492 33 1 0.5471 2.0844 -1.4265 34 1 3.4457 3.9088 -2.9008 35 1 3.9271 4.5497 -1.3115 36 1 4.1333 2.8190 -1.6728 37 1 2.8496 5.8849 -0.2410 38 1 2.1742 6.1434 -1.8675 39 1 -0.6565 10.4623 0.9710 40 1 1.5611 -0.3872 2.0628 41 1 3.0797 -0.6611 1.1757 42 1 2.0658 -2.6213 0.0451 43 1 0.5472 -2.3476 0.9323 44 1 1.2093 -2.3310 3.8713 45 1 0.5286 -3.8331 3.1726 46 1 2.6969 -3.5809 5.1126 47 1 2.0181 -5.0847 4.4123 48 1 4.4301 -4.6919 3.5290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698983805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:20 Heat of formation + Delta-G solvation = -31.306439 kcal Electronic energy + Delta-G solvation = -27297.342081 eV Core-core repulsion = 23321.778749 eV Total energy + Delta-G solvation = -3975.563332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33028 -39.57597 -37.97137 -36.64668 -35.41698 -34.46936 -32.43157 -31.17741 -29.75635 -28.82256 -28.06092 -26.91265 -25.77522 -25.39545 -23.50189 -22.99306 -21.23357 -20.43073 -19.13822 -18.08317 -17.67329 -17.06134 -16.71474 -16.56010 -16.25770 -15.57342 -15.45289 -15.28381 -14.80709 -14.61656 -14.49796 -14.20703 -14.09545 -13.83834 -13.64616 -13.24982 -13.15132 -12.97922 -12.84040 -12.64435 -12.55046 -12.32916 -12.25088 -12.16910 -11.85287 -11.62278 -11.20190 -11.06649 -11.02569 -10.88781 -10.74441 -10.51537 -9.80819 -9.71092 -9.37399 -9.07017 -9.06478 -8.64212 -8.45959 -8.23075 -6.50463 -6.22044 -3.92527 2.12369 2.79392 2.91613 3.05416 3.22008 3.25039 3.29684 3.41738 3.58947 3.88425 3.96584 4.20167 4.34772 4.41764 4.71088 4.79741 4.81843 4.89025 4.92994 5.10972 5.12983 5.14414 5.17230 5.18080 5.19701 5.29019 5.39491 5.48544 5.50273 5.57689 5.62413 5.71949 5.73850 5.79633 5.85227 5.90333 6.01194 6.14292 6.28287 6.56095 6.67437 6.80199 6.85813 7.10348 7.54549 7.59506 8.23471 8.34924 8.56115 9.23313 10.85383 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.001714 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.078157 B =16330.486907 C =16578.529618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.042 3.958 4 C 0.122 3.878 5 N -0.624 5.624 6 C 0.080 3.920 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.150 4.150 10 S -0.063 6.063 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.040 3.960 20 C 0.155 3.845 21 N -0.632 5.632 22 C 0.089 3.911 23 C 0.093 3.907 24 N -0.745 5.745 25 C 0.698 3.302 26 O -0.583 6.583 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.150 -28.624 4.214 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.087 4.087 4 C -0.002 4.002 5 N -0.361 5.361 6 C -0.063 4.063 7 C 0.320 3.680 8 O -0.391 6.391 9 C -0.301 4.301 10 S 0.164 5.836 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.090 4.090 20 C 0.033 3.967 21 N -0.371 5.371 22 C -0.034 4.034 23 C -0.032 4.032 24 N -0.407 5.407 25 C 0.398 3.602 26 O -0.460 6.460 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.832 -28.944 3.890 29.455 hybrid contribution 1.952 1.537 0.509 2.536 sum 5.784 -27.407 4.399 28.354 Atomic orbital electron populations 1.22553 0.87049 1.01931 1.01715 1.61852 1.08251 1.13694 1.42278 1.22487 1.00198 0.87539 0.98513 1.21320 1.00826 0.81212 0.96812 1.47849 1.16894 1.07053 1.64282 1.21784 0.83000 1.02285 0.99259 1.20370 0.85012 0.86263 0.76317 1.90682 1.19359 1.84211 1.44853 1.23560 1.05745 0.95379 1.05386 1.85368 1.19043 0.98933 1.80260 1.22863 1.04009 0.93004 1.48411 0.90936 1.24993 0.95088 0.98993 0.94523 1.70021 1.12989 1.28461 1.38839 0.86169 0.79640 0.81700 0.77996 1.20252 1.20761 1.19694 1.22489 1.01062 0.93537 0.91878 1.21194 0.98672 0.89457 0.87380 1.47126 1.16008 1.56293 1.17665 1.22407 0.96052 1.00310 0.84667 1.22398 0.85760 1.00797 0.94262 1.45195 1.19261 1.59253 1.17025 1.15930 0.82512 0.78758 0.83012 1.90989 1.49038 1.66296 1.39667 0.95084 0.90547 0.91358 0.93866 0.90768 0.89978 0.89723 0.92588 0.90707 0.91278 0.89280 0.89218 0.92204 0.94593 0.90337 0.88734 0.90036 0.90006 0.89882 0.89881 0.89897 0.72971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.54 -5.56 4.76 -242.91 -1.16 -6.72 16 3 C 0.04 0.50 5.28 -3.82 -0.02 0.48 16 4 C 0.12 1.53 5.34 -4.04 -0.02 1.51 16 5 N -0.62 -8.98 2.87 -181.57 -0.52 -9.50 16 6 C 0.08 0.87 10.24 59.85 0.61 1.48 16 7 C 0.53 10.19 7.69 -10.98 -0.08 10.11 16 8 O -0.52 -11.73 15.44 5.55 0.09 -11.64 16 9 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 10 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 11 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.04 0.38 5.28 -3.82 -0.02 0.36 16 20 C 0.16 1.28 5.92 -4.04 -0.02 1.26 16 21 N -0.63 -5.11 2.96 -178.81 -0.53 -5.64 16 22 C 0.09 0.38 7.67 -3.16 -0.02 0.35 16 23 C 0.09 0.29 8.08 -2.98 -0.02 0.26 16 24 N -0.74 -4.80 6.39 -64.46 -0.41 -5.22 16 25 C 0.70 7.32 8.60 -88.40 -0.76 6.56 16 26 O -0.58 -8.78 17.53 5.28 0.09 -8.69 16 27 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.78 6.30 -51.93 -0.33 0.45 16 29 H 0.07 0.50 6.47 -51.92 -0.34 0.16 16 30 H 0.04 0.63 8.12 -51.93 -0.42 0.20 16 31 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 32 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.08 1.19 5.75 -51.93 -0.30 0.89 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 36 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 37 H 0.09 1.70 7.40 -51.91 -0.38 1.31 16 38 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 41 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 42 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 43 H 0.08 0.51 6.55 -51.93 -0.34 0.17 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 48 H 0.43 2.11 8.96 -40.82 -0.37 1.75 16 LS Contribution 404.68 15.07 6.10 6.10 Total: -1.00 -38.23 404.68 -10.10 -48.33 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.80 Total: -1.23 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.55 Total: 7.18 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -1.88 Total: -52.53 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.18 Total: -20.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.23 -10.10 -48.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698983805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.019 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds