Wall clock time and date at job start Wed Apr 1 2020 04:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 110.99884 * 2 1 4 4 C 1.53001 * 109.46901 * 293.95355 * 3 2 1 5 5 N 1.46503 * 109.46667 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00275 * 89.99889 * 5 4 3 7 7 C 1.34776 * 120.00055 * 269.99680 * 5 4 3 8 8 O 1.21283 * 119.99747 * 0.02562 * 7 5 4 9 9 C 1.50703 * 120.00165 * 180.02562 * 7 5 4 10 10 S 1.81004 * 109.46959 * 180.02562 * 9 7 5 11 11 C 1.76194 * 99.99699 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00520 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00197 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99772 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00449 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47510 * 89.99973 * 15 13 11 17 17 H 1.48505 * 109.47279 * 210.00136 * 15 13 11 18 18 H 1.48505 * 109.46975 * 330.00001 * 15 13 11 19 19 C 1.46902 * 111.00027 * 123.95265 * 2 1 3 20 20 C 1.52999 * 109.47112 * 66.04858 * 19 2 1 21 21 N 1.46497 * 109.47130 * 179.97438 * 20 19 2 22 22 C 1.47057 * 125.40952 * 90.00073 * 21 20 19 23 23 C 1.54105 * 103.99235 * 179.97438 * 22 21 20 24 24 N 1.47394 * 103.70056 * 0.10684 * 23 22 21 25 25 C 1.33947 * 109.21036 * 359.88525 * 24 23 22 26 26 O 1.21594 * 123.03846 * 180.09410 * 25 24 23 27 27 H 1.09005 * 109.47337 * 296.04282 * 1 2 3 28 28 H 1.08999 * 109.47372 * 56.04752 * 1 2 3 29 29 H 1.09010 * 109.47249 * 176.04634 * 1 2 3 30 30 H 1.09004 * 109.46836 * 53.95442 * 3 2 1 31 31 H 1.08997 * 109.46931 * 173.95510 * 3 2 1 32 32 H 1.09000 * 109.46967 * 299.99774 * 4 3 2 33 33 H 1.08997 * 109.47202 * 60.00321 * 4 3 2 34 34 H 1.09007 * 109.46699 * 89.99802 * 6 5 4 35 35 H 1.08993 * 109.47424 * 209.99678 * 6 5 4 36 36 H 1.08997 * 109.46966 * 330.00426 * 6 5 4 37 37 H 1.09001 * 109.46967 * 300.00101 * 9 7 5 38 38 H 1.08999 * 109.46812 * 60.00185 * 9 7 5 39 39 H 0.97000 * 120.00070 * 179.97438 * 14 13 11 40 40 H 1.09000 * 109.47307 * 306.04485 * 19 2 1 41 41 H 1.09002 * 109.47269 * 186.04600 * 19 2 1 42 42 H 1.09000 * 109.47340 * 59.99647 * 20 19 2 43 43 H 1.09001 * 109.47326 * 300.00216 * 20 19 2 44 44 H 1.09002 * 110.54831 * 298.59477 * 22 21 20 45 45 H 1.08997 * 110.54826 * 61.25951 * 22 21 20 46 46 H 1.08996 * 110.55034 * 118.66113 * 23 22 21 47 47 H 1.09001 * 110.54910 * 241.47819 * 23 22 21 48 48 H 0.97000 * 125.37712 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 3.5018 3.6928 -1.8338 7 6 1.4030 4.4366 -0.8446 8 8 0.2897 4.2148 -0.4176 9 6 1.9434 5.8435 -0.8453 10 16 0.7044 6.9660 -0.1516 11 6 1.5752 8.4932 -0.2696 12 1 2.5734 8.5153 -0.6813 13 6 0.9778 9.6681 0.1654 14 7 -0.2391 9.6413 0.6666 15 14 1.9006 11.2873 0.0396 16 1 1.6138 11.9199 -1.2729 17 1 1.4624 12.1930 1.1319 18 1 3.3593 11.0364 0.1599 19 6 1.9954 -0.7660 1.1376 20 6 1.6315 -2.2426 0.9704 21 7 2.1570 -3.0065 2.1045 22 6 1.4403 -3.2666 3.3620 23 6 2.4347 -4.1018 4.1918 24 7 3.6105 -4.2212 3.3110 25 6 3.3670 -3.5783 2.1613 26 8 4.1715 -3.5194 1.2515 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3634 -1.0253 -0.0709 30 1 1.5610 1.9273 0.8310 31 1 3.0796 1.3444 0.1082 32 1 2.0657 1.5015 -2.1492 33 1 0.5471 2.0844 -1.4265 34 1 3.4457 3.9088 -2.9008 35 1 3.9271 4.5497 -1.3115 36 1 4.1333 2.8190 -1.6728 37 1 2.8496 5.8849 -0.2410 38 1 2.1742 6.1434 -1.8675 39 1 -0.6565 10.4623 0.9710 40 1 1.5611 -0.3872 2.0628 41 1 3.0797 -0.6611 1.1757 42 1 2.0658 -2.6213 0.0451 43 1 0.5472 -2.3476 0.9323 44 1 1.2093 -2.3310 3.8713 45 1 0.5286 -3.8331 3.1726 46 1 2.6969 -3.5809 5.1126 47 1 2.0181 -5.0847 4.4123 48 1 4.4301 -4.6919 3.5290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698983805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:19 Heat of formation + Delta-G solvation = -61.195955 kcal Electronic energy + Delta-G solvation = -27298.638188 eV Core-core repulsion = 23321.778749 eV Total energy + Delta-G solvation = -3976.859438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94135 -40.93409 -38.92055 -37.41533 -36.63727 -35.17339 -34.59263 -32.27155 -30.64293 -29.67166 -28.96740 -27.84355 -27.69534 -26.62460 -24.08174 -23.74573 -22.15297 -21.10789 -20.59589 -19.54080 -18.69685 -18.14864 -17.58246 -17.35853 -17.25650 -16.89229 -16.82987 -16.39168 -16.28269 -15.74334 -15.45472 -15.21864 -14.82982 -14.78057 -14.71642 -14.46304 -14.30845 -14.08375 -13.79491 -13.60101 -13.53017 -13.27023 -13.17257 -13.07370 -12.92983 -12.88943 -12.83626 -12.61220 -12.49456 -11.97034 -11.89625 -11.70446 -11.36925 -11.14950 -10.92527 -10.39120 -10.28224 -9.81163 -9.55210 -9.40699 -8.68249 -8.35473 -6.13799 1.24516 1.41895 1.44298 1.51589 1.56167 1.58939 2.04420 2.09529 2.26737 2.87829 2.98597 3.15384 3.26935 3.59147 3.69492 3.76411 3.89876 3.99063 4.08339 4.18687 4.20992 4.31973 4.34509 4.38667 4.42110 4.47333 4.54383 4.58226 4.63819 4.68484 4.73860 4.76136 4.87756 4.90757 4.94593 4.97475 5.08899 5.10718 5.40993 5.48726 5.64179 5.89047 5.97785 6.18396 6.18903 6.25645 6.50382 7.05725 7.12087 7.54103 8.73769 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.001714 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.078157 B =16330.486907 C =16578.529618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.534 5.534 3 C 0.051 3.949 4 C 0.124 3.876 5 N -0.611 5.611 6 C 0.071 3.929 7 C 0.530 3.470 8 O -0.563 6.563 9 C -0.124 4.124 10 S -0.152 6.152 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.258 1.258 19 C 0.048 3.952 20 C 0.161 3.839 21 N -0.634 5.634 22 C 0.083 3.917 23 C 0.093 3.907 24 N -0.738 5.738 25 C 0.684 3.316 26 O -0.640 6.640 27 H 0.019 0.981 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.013 0.987 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -29.604 4.238 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.259 5.259 3 C -0.078 4.078 4 C 0.001 3.999 5 N -0.345 5.345 6 C -0.071 4.071 7 C 0.318 3.682 8 O -0.441 6.441 9 C -0.275 4.275 10 S 0.076 5.924 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.182 1.182 19 C -0.081 4.081 20 C 0.038 3.962 21 N -0.372 5.372 22 C -0.039 4.039 23 C -0.030 4.030 24 N -0.400 5.400 25 C 0.384 3.616 26 O -0.522 6.522 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.127 0.873 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.153 -29.977 3.945 30.671 hybrid contribution 1.573 1.685 0.505 2.360 sum 6.726 -28.292 4.450 29.419 Atomic orbital electron populations 1.22586 0.86335 1.03381 1.00786 1.61885 1.08834 1.12521 1.42626 1.22337 1.00371 0.88099 0.97019 1.21437 1.00112 0.80307 0.98079 1.47846 1.17660 1.06672 1.62354 1.22105 0.81087 1.03763 1.00135 1.20170 0.84809 0.86629 0.76633 1.90666 1.21386 1.84744 1.47318 1.23383 1.03650 0.94609 1.05882 1.85542 1.23570 1.01611 1.81710 1.23197 1.04364 0.93311 1.48536 0.89945 1.26132 0.95977 1.03277 0.93756 1.70185 1.14935 1.29686 1.39922 0.84952 0.78597 0.76143 0.78278 1.19263 1.20261 1.18207 1.22405 0.99749 0.94422 0.91570 1.21102 0.99823 0.88224 0.87033 1.47203 1.15696 1.55478 1.18797 1.22735 0.96802 1.01371 0.83017 1.22688 0.84118 1.02329 0.93893 1.45232 1.20458 1.58000 1.16278 1.16312 0.82717 0.79209 0.83372 1.90931 1.50893 1.68507 1.41918 0.96204 0.91336 0.88670 0.96900 0.90083 0.87138 0.91401 0.90781 0.90661 0.88467 0.87538 0.87450 0.91984 0.94526 0.92276 0.90597 0.87543 0.89179 0.87672 0.88094 0.87307 0.72344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.17 1.48 16 2 N -0.53 -10.78 4.76 -922.44 -4.39 -15.17 16 3 C 0.05 1.21 5.28 86.30 0.46 1.67 16 4 C 0.12 2.98 5.34 86.38 0.46 3.45 16 5 N -0.61 -16.81 2.87 -846.75 -2.43 -19.24 16 6 C 0.07 1.33 10.24 127.77 1.31 2.64 16 7 C 0.53 20.34 7.69 87.66 0.67 21.01 16 8 O -0.56 -26.44 15.44 -3.04 -0.05 -26.49 16 9 C -0.12 -5.05 4.71 71.24 0.34 -4.72 16 10 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 11 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -56.09 13.22 21.65 0.29 -55.81 16 15 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 C 0.05 0.90 5.28 86.30 0.46 1.36 16 20 C 0.16 2.51 5.92 86.38 0.51 3.02 16 21 N -0.63 -9.56 2.96 -838.36 -2.48 -12.04 16 22 C 0.08 0.49 7.67 86.65 0.66 1.15 16 23 C 0.09 0.32 8.08 86.58 0.70 1.02 16 24 N -0.74 -8.62 6.39 -476.58 -3.04 -11.67 16 25 C 0.68 14.20 8.60 179.57 1.55 15.75 16 26 O -0.64 -20.00 17.53 -4.01 -0.07 -20.07 16 27 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.07 1.38 6.30 -2.39 -0.02 1.37 16 29 H 0.09 1.20 6.47 -2.38 -0.02 1.19 16 30 H 0.01 0.38 8.12 -2.38 -0.02 0.36 16 31 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16 32 H 0.11 2.09 8.07 -2.39 -0.02 2.07 16 33 H 0.07 1.92 5.75 -2.39 -0.01 1.90 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.07 1.44 6.44 -2.39 -0.02 1.42 16 36 H 0.10 1.33 8.07 -2.39 -0.02 1.31 16 37 H 0.11 3.94 7.40 -2.39 -0.02 3.92 16 38 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 41 H 0.06 1.35 7.93 -2.39 -0.02 1.33 16 42 H 0.08 1.50 7.91 -2.39 -0.02 1.48 16 43 H 0.11 1.10 6.55 -2.39 -0.02 1.09 16 44 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.43 3.90 8.96 -92.71 -0.83 3.07 16 Total: -1.00 -87.85 404.68 -1.79 -89.64 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.13 Total: 16.49 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 9.39 Total: 18.31 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -12.06 Total: -113.92 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.12 Total: -46.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -87.85 -1.79 -89.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698983805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -87.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds