Wall clock time and date at job start Wed Apr 1 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47218 * 2 1 4 4 C 1.53002 * 109.47238 * 240.00163 * 2 1 3 5 5 N 1.46499 * 109.47228 * 294.70001 * 4 2 1 6 6 C 1.34769 * 120.00517 * 175.00171 * 5 4 2 7 7 O 1.21290 * 119.99896 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00672 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47603 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99972 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00271 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99732 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00206 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99815 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47523 * 89.99905 * 14 12 10 16 16 H 1.48507 * 109.47070 * 209.99613 * 14 12 10 17 17 H 1.48496 * 109.47175 * 329.99384 * 14 12 10 18 18 N 1.46903 * 109.47443 * 120.00149 * 2 1 3 19 19 C 1.46893 * 111.00155 * 173.24792 * 18 2 1 20 20 C 1.46897 * 110.99931 * 297.20123 * 18 2 1 21 21 C 1.53004 * 109.47080 * 169.99579 * 20 18 2 22 22 N 1.46499 * 109.46950 * 180.02562 * 21 20 18 23 23 C 1.47057 * 125.41232 * 90.00302 * 22 21 20 24 24 C 1.54103 * 103.99288 * 179.97438 * 23 22 21 25 25 N 1.47389 * 103.69901 * 0.10787 * 24 23 22 26 26 C 1.33943 * 109.21351 * 359.88658 * 25 24 23 27 27 O 1.21595 * 123.04119 * 180.10074 * 26 25 24 28 28 H 1.09000 * 109.46686 * 299.99968 * 1 2 3 29 29 H 1.08994 * 109.47100 * 59.99709 * 1 2 3 30 30 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46913 * 54.69788 * 4 2 1 32 32 H 1.08999 * 109.47265 * 174.70000 * 4 2 1 33 33 H 0.97006 * 119.99976 * 355.00040 * 5 4 2 34 34 H 1.08999 * 109.47352 * 300.00387 * 8 6 5 35 35 H 1.09004 * 109.46756 * 60.00141 * 8 6 5 36 36 H 0.96995 * 120.00494 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46976 * 177.99920 * 19 18 2 38 38 H 1.09001 * 109.47111 * 297.99199 * 19 18 2 39 39 H 1.08994 * 109.47572 * 57.99866 * 19 18 2 40 40 H 1.09007 * 109.47021 * 49.99652 * 20 18 2 41 41 H 1.08996 * 109.47101 * 290.00120 * 20 18 2 42 42 H 1.08999 * 109.46887 * 59.99978 * 21 20 18 43 43 H 1.08999 * 109.47138 * 300.00018 * 21 20 18 44 44 H 1.09006 * 110.54391 * 298.59173 * 23 22 21 45 45 H 1.08996 * 110.54816 * 61.25630 * 23 22 21 46 46 H 1.08995 * 110.55077 * 118.66155 * 24 23 22 47 47 H 1.08996 * 110.54614 * 241.47990 * 24 23 22 48 48 H 0.96999 * 125.37750 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6587 -2.1343 -1.1873 6 6 1.9142 -2.9478 -2.2309 7 8 2.4596 -2.5098 -3.2218 8 6 1.5225 -4.4015 -2.1669 9 16 1.9948 -5.2223 -3.7095 10 6 1.4354 -6.8581 -3.3694 11 1 0.9634 -7.0818 -2.4242 12 6 1.6013 -7.8592 -4.3165 13 7 2.1761 -7.5864 -5.4687 14 14 1.0076 -9.5933 -3.9562 15 1 -0.3985 -9.7396 -4.4107 16 1 1.8645 -10.5694 -4.6761 17 1 1.0849 -9.8496 -2.4956 18 7 2.0198 -0.6925 1.1994 19 6 3.4792 -0.8533 1.1554 20 6 1.6042 0.0111 2.4201 21 6 1.9114 -0.8595 3.6402 22 7 1.4964 -0.1580 4.8576 23 6 0.1686 -0.2492 5.4830 24 6 0.2726 0.6717 6.7142 25 7 1.6519 1.1871 6.6491 26 6 2.2658 0.6692 5.5772 27 8 3.4176 0.9263 5.2843 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6012 -0.2651 -2.1367 32 1 3.1259 -0.6397 -1.2980 33 1 1.2222 -2.4846 -0.3949 34 1 2.0324 -4.8788 -1.3301 35 1 0.4442 -4.4815 -2.0287 36 1 2.2918 -8.2859 -6.1307 37 1 3.8192 -1.3370 2.0712 38 1 3.7513 -1.4680 0.2974 39 1 3.9501 0.1255 1.0652 40 1 0.5337 0.2119 2.3772 41 1 2.1475 0.9527 2.4995 42 1 2.9819 -1.0602 3.6831 43 1 1.3680 -1.8011 3.5608 44 1 -0.6013 0.1111 4.8005 45 1 -0.0412 -1.2744 5.7877 46 1 -0.4456 1.4884 6.6429 47 1 0.1174 0.1033 7.6312 48 1 2.0518 1.8028 7.2830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700479653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:44 Heat of formation + Delta-G solvation = -38.087952 kcal Electronic energy + Delta-G solvation = -27656.314367 eV Core-core repulsion = 23680.456967 eV Total energy + Delta-G solvation = -3975.857400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38743 -39.60296 -38.24724 -36.70843 -35.26872 -33.81200 -32.39357 -31.63040 -29.94062 -29.41537 -28.75326 -26.33527 -25.56922 -25.34220 -23.50518 -22.91019 -20.59916 -20.49104 -19.88828 -18.11916 -17.80744 -17.14854 -16.86678 -16.35761 -16.06880 -15.71158 -15.48187 -15.03157 -14.77342 -14.70520 -14.59634 -14.28576 -14.16243 -14.02056 -13.69611 -13.31385 -13.24231 -13.04756 -12.84456 -12.74617 -12.52714 -12.36827 -12.17697 -11.85220 -11.77963 -11.46291 -11.24849 -11.03609 -10.98803 -10.87677 -10.72260 -10.57560 -9.77570 -9.76280 -9.31592 -9.07371 -9.03482 -8.74427 -8.66485 -8.18000 -6.45116 -6.18060 -3.87902 2.08246 2.74393 3.11013 3.20719 3.24610 3.30017 3.32444 3.37955 3.64837 3.85604 3.91285 4.24152 4.31370 4.35787 4.51090 4.64605 4.75054 4.81798 4.87027 5.01683 5.05205 5.13387 5.13836 5.16945 5.25574 5.27479 5.36088 5.46909 5.49189 5.58164 5.65894 5.66611 5.68685 5.82498 5.93165 5.96927 5.99026 6.21843 6.24302 6.61525 6.62889 6.72574 6.83097 7.05576 7.63183 7.90182 8.18085 8.38937 8.74408 9.27208 10.89361 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.001909 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.921854 B =14660.383875 C =15610.995804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.055 0.945 4 C 0.128 3.872 5 N -0.726 5.726 6 C 0.530 3.470 7 O -0.524 6.524 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.533 5.533 19 C 0.015 3.985 20 C 0.035 3.965 21 C 0.153 3.847 22 N -0.631 5.631 23 C 0.090 3.910 24 C 0.092 3.908 25 N -0.745 5.745 26 C 0.697 3.303 27 O -0.585 6.585 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.405 0.595 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 18.954 26.137 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 H 0.073 0.927 4 C 0.003 3.997 5 N -0.381 5.381 6 C 0.316 3.684 7 O -0.399 6.399 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.258 5.258 19 C -0.133 4.133 20 C -0.094 4.094 21 C 0.031 3.969 22 N -0.370 5.370 23 C -0.033 4.033 24 C -0.033 4.033 25 N -0.407 5.407 26 C 0.397 3.603 27 O -0.463 6.463 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.231 19.190 24.008 31.360 hybrid contribution -0.862 -0.656 2.110 2.372 sum -7.093 18.534 26.118 32.802 Atomic orbital electron populations 1.21887 0.93614 1.03094 1.01751 1.21934 0.96380 0.95962 0.89562 0.92729 1.21312 0.99922 0.82138 0.96355 1.45861 1.63689 1.08994 1.19585 1.20298 0.78071 0.87728 0.82351 1.90699 1.41203 1.76509 1.31473 1.23503 1.04483 0.94550 1.07638 1.85390 1.78947 1.05606 1.13597 1.22872 1.45511 0.94634 1.05202 0.90956 1.24992 0.94914 0.99252 0.94498 1.70017 1.40479 1.33807 1.06028 0.86175 0.78635 0.82242 0.78481 1.20314 1.20802 1.19707 1.61940 1.12791 1.49965 1.01143 1.22558 0.86517 1.00707 1.03533 1.22548 1.01402 0.95885 0.89574 1.21227 1.01772 0.94067 0.79874 1.47123 1.13326 1.49037 1.27499 1.22406 0.86217 1.00858 0.93850 1.22408 0.84541 0.97636 0.98688 1.45196 1.14337 1.51661 1.29539 1.15947 0.84497 0.79334 0.80493 1.90985 1.15877 1.65971 1.73436 0.92588 0.91746 0.91289 0.90901 0.91811 0.75951 0.89294 0.89386 0.92237 0.91007 0.90214 0.95324 0.90146 0.94326 0.89530 0.89044 0.89960 0.89742 0.89932 0.89876 0.72998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.94 37.16 0.33 -0.77 16 2 C 0.07 0.61 2.34 -67.71 -0.16 0.45 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 4 C 0.13 1.49 4.55 -4.04 -0.02 1.47 16 5 N -0.73 -9.71 4.94 -60.29 -0.30 -10.01 16 6 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 7 O -0.52 -12.02 15.86 5.55 0.09 -11.93 16 8 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.53 -4.51 3.99 -234.89 -0.94 -5.45 16 19 C 0.01 0.14 8.80 60.06 0.53 0.67 16 20 C 0.04 0.27 5.13 -3.82 -0.02 0.25 16 21 C 0.15 1.14 5.93 -4.04 -0.02 1.12 16 22 N -0.63 -4.60 2.96 -178.81 -0.53 -5.13 16 23 C 0.09 0.30 7.67 -3.16 -0.02 0.28 16 24 C 0.09 0.22 8.08 -2.98 -0.02 0.20 16 25 N -0.74 -4.36 6.39 -64.47 -0.41 -4.77 16 26 C 0.70 6.88 8.60 -88.40 -0.76 6.12 16 27 O -0.59 -8.52 17.53 5.28 0.09 -8.43 16 28 H 0.06 0.36 6.27 -51.93 -0.33 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 33 H 0.40 4.61 7.42 -40.82 -0.30 4.30 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.65 6.22 -51.93 -0.32 0.33 16 38 H 0.08 0.86 6.33 -51.93 -0.33 0.53 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.53 5.94 -51.92 -0.31 0.22 16 41 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.09 0.81 6.21 -51.93 -0.32 0.48 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 47 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 48 H 0.43 1.89 8.96 -40.82 -0.37 1.53 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -38.22 400.52 -9.92 -48.14 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.62 Total: 0.82 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.16 Total: 3.76 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -1.44 Total: -50.96 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.18 Total: -20.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.22 -9.92 -48.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700479653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.049 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds