Wall clock time and date at job start Wed Apr 1 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47218 * 2 1 4 4 C 1.53002 * 109.47238 * 240.00163 * 2 1 3 5 5 N 1.46499 * 109.47228 * 294.70001 * 4 2 1 6 6 C 1.34769 * 120.00517 * 175.00171 * 5 4 2 7 7 O 1.21290 * 119.99896 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00672 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47603 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99972 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00271 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99732 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00206 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99815 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47523 * 89.99905 * 14 12 10 16 16 H 1.48507 * 109.47070 * 209.99613 * 14 12 10 17 17 H 1.48496 * 109.47175 * 329.99384 * 14 12 10 18 18 N 1.46903 * 109.47443 * 120.00149 * 2 1 3 19 19 C 1.46893 * 111.00155 * 173.24792 * 18 2 1 20 20 C 1.46897 * 110.99931 * 297.20123 * 18 2 1 21 21 C 1.53004 * 109.47080 * 169.99579 * 20 18 2 22 22 N 1.46499 * 109.46950 * 180.02562 * 21 20 18 23 23 C 1.47057 * 125.41232 * 90.00302 * 22 21 20 24 24 C 1.54103 * 103.99288 * 179.97438 * 23 22 21 25 25 N 1.47389 * 103.69901 * 0.10787 * 24 23 22 26 26 C 1.33943 * 109.21351 * 359.88658 * 25 24 23 27 27 O 1.21595 * 123.04119 * 180.10074 * 26 25 24 28 28 H 1.09000 * 109.46686 * 299.99968 * 1 2 3 29 29 H 1.08994 * 109.47100 * 59.99709 * 1 2 3 30 30 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46913 * 54.69788 * 4 2 1 32 32 H 1.08999 * 109.47265 * 174.70000 * 4 2 1 33 33 H 0.97006 * 119.99976 * 355.00040 * 5 4 2 34 34 H 1.08999 * 109.47352 * 300.00387 * 8 6 5 35 35 H 1.09004 * 109.46756 * 60.00141 * 8 6 5 36 36 H 0.96995 * 120.00494 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46976 * 177.99920 * 19 18 2 38 38 H 1.09001 * 109.47111 * 297.99199 * 19 18 2 39 39 H 1.08994 * 109.47572 * 57.99866 * 19 18 2 40 40 H 1.09007 * 109.47021 * 49.99652 * 20 18 2 41 41 H 1.08996 * 109.47101 * 290.00120 * 20 18 2 42 42 H 1.08999 * 109.46887 * 59.99978 * 21 20 18 43 43 H 1.08999 * 109.47138 * 300.00018 * 21 20 18 44 44 H 1.09006 * 110.54391 * 298.59173 * 23 22 21 45 45 H 1.08996 * 110.54816 * 61.25630 * 23 22 21 46 46 H 1.08995 * 110.55077 * 118.66155 * 24 23 22 47 47 H 1.08996 * 110.54614 * 241.47990 * 24 23 22 48 48 H 0.96999 * 125.37750 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6587 -2.1343 -1.1873 6 6 1.9142 -2.9478 -2.2309 7 8 2.4596 -2.5098 -3.2218 8 6 1.5225 -4.4015 -2.1669 9 16 1.9948 -5.2223 -3.7095 10 6 1.4354 -6.8581 -3.3694 11 1 0.9634 -7.0818 -2.4242 12 6 1.6013 -7.8592 -4.3165 13 7 2.1761 -7.5864 -5.4687 14 14 1.0076 -9.5933 -3.9562 15 1 -0.3985 -9.7396 -4.4107 16 1 1.8645 -10.5694 -4.6761 17 1 1.0849 -9.8496 -2.4956 18 7 2.0198 -0.6925 1.1994 19 6 3.4792 -0.8533 1.1554 20 6 1.6042 0.0111 2.4201 21 6 1.9114 -0.8595 3.6402 22 7 1.4964 -0.1580 4.8576 23 6 0.1686 -0.2492 5.4830 24 6 0.2726 0.6717 6.7142 25 7 1.6519 1.1871 6.6491 26 6 2.2658 0.6692 5.5772 27 8 3.4176 0.9263 5.2843 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6012 -0.2651 -2.1367 32 1 3.1259 -0.6397 -1.2980 33 1 1.2222 -2.4846 -0.3949 34 1 2.0324 -4.8788 -1.3301 35 1 0.4442 -4.4815 -2.0287 36 1 2.2918 -8.2859 -6.1307 37 1 3.8192 -1.3370 2.0712 38 1 3.7513 -1.4680 0.2974 39 1 3.9501 0.1255 1.0652 40 1 0.5337 0.2119 2.3772 41 1 2.1475 0.9527 2.4995 42 1 2.9819 -1.0602 3.6831 43 1 1.3680 -1.8011 3.5608 44 1 -0.6013 0.1111 4.8005 45 1 -0.0412 -1.2744 5.7877 46 1 -0.4456 1.4884 6.6429 47 1 0.1174 0.1033 7.6312 48 1 2.0518 1.8028 7.2830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700479653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:43 Heat of formation + Delta-G solvation = -68.825087 kcal Electronic energy + Delta-G solvation = -27657.647229 eV Core-core repulsion = 23680.456967 eV Total energy + Delta-G solvation = -3977.190262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93138 -40.80071 -39.32007 -37.41877 -36.08630 -34.74047 -34.55357 -32.57705 -30.79495 -30.41893 -29.37346 -27.72984 -27.12869 -26.25161 -23.84458 -23.58258 -21.90683 -21.09759 -20.82359 -19.80822 -18.65918 -17.92346 -17.68772 -17.41126 -17.00469 -16.85230 -16.74354 -16.30938 -16.14637 -15.72511 -15.58561 -15.17326 -15.03182 -14.71414 -14.64384 -14.53579 -14.31044 -14.15123 -13.81027 -13.58291 -13.26708 -13.13581 -13.12028 -12.92841 -12.86367 -12.75374 -12.60163 -12.45984 -12.28256 -12.00920 -11.71479 -11.57266 -11.36976 -11.11737 -10.90674 -10.37719 -10.23398 -10.01076 -9.54282 -9.38866 -8.63211 -8.31911 -6.09513 1.30249 1.44383 1.49935 1.57751 1.60742 1.69546 2.06536 2.29238 2.37573 2.81973 3.02060 3.15410 3.37373 3.62919 3.66073 3.83963 3.93098 4.07570 4.10852 4.22548 4.31608 4.35677 4.36321 4.43112 4.51492 4.56601 4.58283 4.67010 4.70843 4.76569 4.78197 4.84702 4.91945 5.00630 5.04133 5.11293 5.13058 5.36323 5.44637 5.49691 5.68203 5.96135 5.99891 6.19120 6.22689 6.52937 6.63610 7.09309 7.34385 7.54874 8.77264 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.001909 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.921854 B =14660.383875 C =15610.995804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.061 0.939 4 C 0.127 3.873 5 N -0.696 5.696 6 C 0.532 3.468 7 O -0.572 6.572 8 C -0.126 4.126 9 S -0.154 6.154 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.257 1.257 18 N -0.529 5.529 19 C 0.019 3.981 20 C 0.046 3.954 21 C 0.154 3.846 22 N -0.631 5.631 23 C 0.085 3.915 24 C 0.092 3.908 25 N -0.739 5.739 26 C 0.682 3.318 27 O -0.646 6.646 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.270 0.730 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.100 0.900 41 H 0.016 0.984 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 18.529 28.940 35.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.079 0.921 4 C 0.003 3.997 5 N -0.351 5.351 6 C 0.318 3.682 7 O -0.451 6.451 8 C -0.278 4.278 9 S 0.073 5.927 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.181 1.181 18 N -0.254 5.254 19 C -0.129 4.129 20 C -0.083 4.083 21 C 0.032 3.968 22 N -0.369 5.369 23 C -0.037 4.037 24 C -0.032 4.032 25 N -0.400 5.400 26 C 0.382 3.618 27 O -0.528 6.528 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.257 0.743 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.119 0.881 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -9.269 18.786 26.898 34.093 hybrid contribution 0.030 -0.397 1.353 1.411 sum -9.239 18.389 28.251 34.952 Atomic orbital electron populations 1.21869 0.92013 1.03271 1.02792 1.21869 0.97458 0.95606 0.88093 0.92105 1.21429 0.99499 0.80879 0.97941 1.45581 1.61863 1.09256 1.18380 1.20057 0.77854 0.87511 0.82801 1.90690 1.43731 1.77095 1.33615 1.23338 1.05813 0.94952 1.03654 1.85586 1.80054 1.07401 1.19624 1.23205 1.45484 0.94755 1.05743 0.89861 1.26143 0.94798 1.04299 0.94087 1.70186 1.41920 1.35451 1.07300 0.84946 0.78216 0.75779 0.78989 1.19244 1.20459 1.18131 1.61966 1.11948 1.50022 1.01505 1.22471 0.87351 1.00110 1.02991 1.22484 1.02047 0.94695 0.89033 1.21169 1.00727 0.94828 0.80088 1.47185 1.14616 1.48039 1.27065 1.22751 0.84391 1.02281 0.94325 1.22713 0.82757 0.98424 0.99269 1.45245 1.15619 1.50942 1.28239 1.16351 0.84102 0.79816 0.81507 1.90929 1.18651 1.68123 1.75133 0.90731 0.91622 0.91471 0.91450 0.92802 0.74272 0.87467 0.87228 0.92067 0.90736 0.91622 0.95948 0.88148 0.96560 0.92020 0.87101 0.88067 0.88110 0.87705 0.87796 0.72493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.94 71.98 0.64 -1.07 16 2 C 0.08 1.22 2.34 44.92 0.11 1.33 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.13 2.86 4.55 86.38 0.39 3.25 16 5 N -0.70 -17.67 4.94 -463.06 -2.29 -19.96 16 6 C 0.53 19.73 7.85 87.66 0.69 20.42 16 7 O -0.57 -26.86 15.86 -3.06 -0.05 -26.91 16 8 C -0.13 -5.02 6.16 71.23 0.44 -4.58 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.64 5.49 84.86 0.47 1.11 16 13 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 14 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 18 N -0.53 -8.11 3.99 -897.05 -3.58 -11.69 16 19 C 0.02 0.36 8.80 127.69 1.12 1.48 16 20 C 0.05 0.63 5.13 86.30 0.44 1.07 16 21 C 0.15 2.10 5.93 86.38 0.51 2.61 16 22 N -0.63 -8.14 2.96 -838.35 -2.48 -10.62 16 23 C 0.08 0.27 7.67 86.65 0.66 0.94 16 24 C 0.09 0.13 8.08 86.58 0.70 0.83 16 25 N -0.74 -7.58 6.39 -476.61 -3.04 -10.62 16 26 C 0.68 13.19 8.60 179.57 1.55 14.74 16 27 O -0.65 -19.64 17.53 -4.02 -0.07 -19.71 16 28 H 0.07 0.65 6.27 -2.39 -0.01 0.64 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.86 7.31 -2.39 -0.02 0.84 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.36 6.70 -2.39 -0.02 1.34 16 33 H 0.42 8.45 7.42 -92.70 -0.69 7.76 16 34 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 35 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.07 1.36 6.22 -2.38 -0.01 1.35 16 38 H 0.07 1.42 6.33 -2.39 -0.02 1.40 16 39 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 0.97 5.94 -2.38 -0.01 0.96 16 41 H 0.02 0.30 8.12 -2.39 -0.02 0.28 16 42 H 0.06 1.16 6.21 -2.39 -0.01 1.15 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 -0.02 8.14 -2.38 -0.02 -0.04 16 45 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.43 3.43 8.96 -92.71 -0.83 2.59 16 Total: -1.00 -87.61 400.52 -2.52 -90.13 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.53 Total: 17.95 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 8.37 Total: 11.62 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -11.10 Total: -108.99 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.12 Total: -46.62 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -87.61 -2.52 -90.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700479653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.306 kcal (2) G-P(sol) polarization free energy of solvation -87.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds