Wall clock time and date at job start Wed Apr 1 2020 04:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00390 * 2 1 4 4 H 1.48504 * 109.47287 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.47297 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47290 * 149.99927 * 3 2 1 7 7 C 1.38823 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99914 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46961 * 60.00334 * 10 9 7 13 13 C 1.52998 * 109.46994 * 65.00110 * 12 10 9 14 14 N 1.46504 * 109.47350 * 179.97438 * 13 12 10 15 15 C 1.34771 * 120.00354 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00341 * 180.02562 * 15 14 13 18 18 N 1.46494 * 109.47617 * 179.97438 * 17 15 14 19 19 C 1.34598 * 126.43734 * 124.99539 * 18 17 15 20 20 N 1.31071 * 106.67788 * 180.02562 * 19 18 17 21 21 N 1.28838 * 107.99577 * 0.02562 * 20 19 18 22 22 N 1.28740 * 109.39237 * 359.72825 * 21 20 19 23 23 C 1.53001 * 109.47525 * 300.00674 * 10 9 7 24 24 C 1.50706 * 109.46607 * 294.99683 * 23 10 9 25 25 C 1.38238 * 119.99744 * 90.00198 * 24 23 10 26 26 C 1.38234 * 119.99693 * 179.97438 * 25 24 23 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00173 * 269.97579 * 24 23 10 30 30 H 0.97005 * 119.99559 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47240 * 184.99614 * 12 10 9 33 33 H 1.08997 * 109.47353 * 305.00278 * 12 10 9 34 34 H 1.09001 * 109.47352 * 300.00209 * 13 12 10 35 35 H 1.09001 * 109.47379 * 59.99730 * 13 12 10 36 36 H 0.97005 * 119.99664 * 359.97438 * 14 13 12 37 37 H 1.09001 * 109.47086 * 300.00322 * 17 15 14 38 38 H 1.09009 * 109.46886 * 59.99747 * 17 15 14 39 39 H 1.08003 * 126.66312 * 359.97255 * 19 18 17 40 40 H 1.08997 * 109.47212 * 175.00386 * 23 10 9 41 41 H 1.08995 * 109.47163 * 54.99797 * 23 10 9 42 42 H 1.07997 * 119.99846 * 359.97438 * 25 24 23 43 43 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 46 46 H 1.07999 * 120.00025 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 1.3495 -4.4853 -0.0020 12 6 2.9384 -3.7385 1.2469 13 6 2.0526 -3.7836 2.4936 14 7 2.8956 -3.8624 3.6892 15 6 2.3292 -3.9135 4.9110 16 8 1.1215 -3.8937 5.0209 17 6 3.1963 -3.9939 6.1408 18 7 2.3482 -4.0373 7.3345 19 6 2.3734 -4.9753 8.2994 20 7 1.4592 -4.6379 9.1760 21 7 0.9012 -3.5497 8.7704 22 7 1.4397 -3.1811 7.6606 23 6 2.9367 -3.7374 -1.2515 24 6 2.0624 -3.7807 -2.4783 25 6 1.6861 -2.6051 -3.1007 26 6 0.8845 -2.6449 -4.2262 27 6 0.4598 -3.8602 -4.7297 28 6 0.8320 -5.0355 -4.1045 29 6 1.6372 -4.9960 -2.9815 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.5492 -4.6402 1.2025 33 1 3.5859 -2.8629 1.2928 34 1 1.4417 -2.8820 2.5381 35 1 1.4050 -4.6592 2.4477 36 1 3.8615 -3.8786 3.6013 37 1 3.8076 -4.8953 6.0960 38 1 3.8436 -3.1180 6.1870 39 1 3.0205 -5.8389 8.3426 40 1 3.5475 -4.6391 -1.2087 41 1 3.5841 -2.8618 -1.2975 42 1 2.0183 -1.6557 -2.7075 43 1 0.5902 -1.7264 -4.7122 44 1 -0.1668 -3.8912 -5.6089 45 1 0.4966 -5.9848 -4.4953 46 1 1.9312 -5.9144 -2.4952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700884611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:29 Heat of formation + Delta-G solvation = 122.755236 kcal Electronic energy + Delta-G solvation = -29084.564577 eV Core-core repulsion = 25012.530660 eV Total energy + Delta-G solvation = -4072.033916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.29097 -39.86913 -38.87050 -36.76448 -35.60252 -34.65515 -32.59500 -32.52571 -31.30785 -30.35094 -29.96712 -28.73589 -26.98589 -24.32304 -23.98173 -23.82913 -22.77381 -22.01522 -20.92834 -20.75367 -19.55321 -18.10191 -17.95600 -17.17229 -16.55904 -16.25256 -16.18983 -15.83967 -15.43131 -15.27462 -14.63893 -14.43937 -14.25027 -13.94199 -13.69927 -13.30357 -13.14367 -12.95651 -12.88527 -12.67258 -12.44464 -12.25125 -11.75193 -11.55635 -11.41392 -11.33251 -11.26270 -11.09073 -10.94278 -10.87662 -10.55929 -10.55436 -10.41852 -10.40137 -10.01341 -9.85659 -9.63792 -9.06811 -8.97111 -8.38670 -8.11832 -7.02583 -5.82081 -3.11520 1.09092 1.63458 1.87375 1.95980 2.16040 2.31561 2.94374 3.36126 3.40862 3.45602 3.88068 3.99177 4.28999 4.34381 4.39533 4.52390 4.62456 5.21926 5.24436 5.26985 5.33154 5.37808 5.46486 5.52218 5.53417 5.61663 5.72777 5.84784 5.86507 5.95889 6.02307 6.06284 6.17409 6.29072 6.33157 6.35913 6.53869 6.60151 6.63180 6.70330 6.84910 6.93282 7.09556 7.31734 7.32136 7.58349 7.61522 7.99743 8.34363 8.49545 9.46554 10.03444 10.37976 11.39493 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.002534 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.908941 B =11045.570710 C =12640.541083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.896 3.104 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.186 3.814 11 H 0.055 0.945 12 C -0.139 4.139 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.495 3.505 16 O -0.509 6.509 17 C 0.094 3.906 18 N -0.299 5.299 19 C 0.155 3.845 20 N -0.309 5.309 21 N -0.080 5.080 22 N -0.057 5.057 23 C -0.093 4.093 24 C -0.058 4.058 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.234 0.766 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 -13.724 2.983 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.727 3.273 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.074 3.926 11 H 0.073 0.927 12 C -0.179 4.179 13 C 0.005 3.995 14 N -0.368 5.368 15 C 0.276 3.724 16 O -0.383 6.383 17 C -0.032 4.032 18 N -0.101 5.101 19 C -0.143 4.143 20 N -0.156 5.156 21 N -0.074 5.074 22 N -0.043 5.043 23 C -0.133 4.133 24 C -0.058 4.058 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.233 0.767 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.251 0.749 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.152 0.848 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.761 -12.727 3.594 17.050 hybrid contribution 1.427 0.449 -0.665 1.637 sum 12.188 -12.278 2.930 17.546 Atomic orbital electron populations 1.69648 1.05013 1.25635 1.56678 1.24686 0.95289 0.97367 1.02859 0.86386 0.78719 0.84719 0.77473 1.21800 1.21871 1.20946 1.18987 0.90718 0.83892 1.43334 0.91308 1.42375 1.05683 0.99534 1.87896 1.20047 0.92419 0.90119 0.89975 0.92701 1.22279 0.99052 1.01127 0.95444 1.21478 0.93217 1.03206 0.81607 1.45973 1.10713 1.74295 1.05810 1.20057 0.89064 0.78738 0.84519 1.90883 1.13884 1.47618 1.85870 1.22043 0.91887 1.08269 0.80969 1.48173 1.26078 1.17311 1.18540 1.27703 1.01662 0.98142 0.86807 1.74969 1.07585 1.08837 1.24238 1.78698 1.18967 1.06322 1.03451 1.79099 1.00056 1.14856 1.10326 1.21145 0.97294 1.01223 0.93612 1.19786 0.97754 0.92585 0.95701 1.21286 0.95967 0.99023 0.93418 1.21153 0.98555 0.97297 0.97190 1.20985 1.01156 0.92948 1.00304 1.20929 0.99645 0.97582 0.96940 1.20955 0.99582 0.97246 0.97010 0.93463 0.78041 0.93032 0.90733 0.89078 0.92356 0.76740 0.84081 0.84706 0.74950 0.92758 0.90681 0.84844 0.86884 0.87218 0.87188 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 13.06 55.49 0.72 -25.48 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.24 -5.62 7.88 -15.06 -0.12 -5.74 16 8 H 0.07 1.57 6.64 -52.49 -0.35 1.22 16 9 N -0.72 -15.22 4.13 -53.42 -0.22 -15.44 16 10 C 0.19 3.04 2.67 -67.93 -0.18 2.86 16 11 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.14 -1.87 4.73 -26.73 -0.13 -1.99 16 13 C 0.13 1.84 5.56 -4.04 -0.02 1.82 16 14 N -0.72 -7.51 5.56 -60.29 -0.33 -7.85 16 15 C 0.49 5.86 7.85 -10.99 -0.09 5.77 16 16 O -0.51 -9.18 15.71 5.55 0.09 -9.09 16 17 C 0.09 0.60 6.96 -5.20 -0.04 0.56 16 18 N -0.30 -3.16 3.19 -63.74 -0.20 -3.36 16 19 C 0.16 1.36 12.79 -90.39 -1.16 0.20 16 20 N -0.31 -4.15 12.36 29.59 0.37 -3.79 16 21 N -0.08 -1.31 13.43 60.35 0.81 -0.50 16 22 N -0.06 -0.89 12.30 60.35 0.74 -0.15 16 23 C -0.09 -1.42 4.75 -27.88 -0.13 -1.56 16 24 C -0.06 -0.96 4.95 -104.62 -0.52 -1.48 16 25 C -0.08 -1.44 9.31 -39.58 -0.37 -1.81 16 26 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 27 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 28 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 29 C -0.13 -1.92 9.70 -39.58 -0.38 -2.31 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.39 9.44 8.03 -40.82 -0.33 9.11 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 34 H 0.09 1.78 7.75 -51.93 -0.40 1.37 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 2.56 8.47 -40.82 -0.35 2.22 16 37 H 0.14 0.11 8.08 -51.93 -0.42 -0.31 16 38 H 0.14 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.23 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.07 1.25 7.05 -51.93 -0.37 0.88 16 42 H 0.13 2.74 7.37 -52.49 -0.39 2.35 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -36.09 393.15 -7.87 -43.97 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.33 Total: 10.86 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.42 Total: -11.09 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 1.88 Total: -56.56 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.09 -7.87 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700884611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.723 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds