Wall clock time and date at job start Wed Apr 1 2020 04:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00390 * 2 1 4 4 H 1.48504 * 109.47287 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.47297 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47290 * 149.99927 * 3 2 1 7 7 C 1.38823 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99914 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47415 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46961 * 60.00334 * 10 9 7 13 13 C 1.52998 * 109.46994 * 65.00110 * 12 10 9 14 14 N 1.46504 * 109.47350 * 179.97438 * 13 12 10 15 15 C 1.34771 * 120.00354 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00341 * 180.02562 * 15 14 13 18 18 N 1.46494 * 109.47617 * 179.97438 * 17 15 14 19 19 C 1.34598 * 126.43734 * 124.99539 * 18 17 15 20 20 N 1.31071 * 106.67788 * 180.02562 * 19 18 17 21 21 N 1.28838 * 107.99577 * 0.02562 * 20 19 18 22 22 N 1.28740 * 109.39237 * 359.72825 * 21 20 19 23 23 C 1.53001 * 109.47525 * 300.00674 * 10 9 7 24 24 C 1.50706 * 109.46607 * 294.99683 * 23 10 9 25 25 C 1.38238 * 119.99744 * 90.00198 * 24 23 10 26 26 C 1.38234 * 119.99693 * 179.97438 * 25 24 23 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00173 * 269.97579 * 24 23 10 30 30 H 0.97005 * 119.99559 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47240 * 184.99614 * 12 10 9 33 33 H 1.08997 * 109.47353 * 305.00278 * 12 10 9 34 34 H 1.09001 * 109.47352 * 300.00209 * 13 12 10 35 35 H 1.09001 * 109.47379 * 59.99730 * 13 12 10 36 36 H 0.97005 * 119.99664 * 359.97438 * 14 13 12 37 37 H 1.09001 * 109.47086 * 300.00322 * 17 15 14 38 38 H 1.09009 * 109.46886 * 59.99747 * 17 15 14 39 39 H 1.08003 * 126.66312 * 359.97255 * 19 18 17 40 40 H 1.08997 * 109.47212 * 175.00386 * 23 10 9 41 41 H 1.08995 * 109.47163 * 54.99797 * 23 10 9 42 42 H 1.07997 * 119.99846 * 359.97438 * 25 24 23 43 43 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 46 46 H 1.07999 * 120.00025 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 1.3495 -4.4853 -0.0020 12 6 2.9384 -3.7385 1.2469 13 6 2.0526 -3.7836 2.4936 14 7 2.8956 -3.8624 3.6892 15 6 2.3292 -3.9135 4.9110 16 8 1.1215 -3.8937 5.0209 17 6 3.1963 -3.9939 6.1408 18 7 2.3482 -4.0373 7.3345 19 6 2.3734 -4.9753 8.2994 20 7 1.4592 -4.6379 9.1760 21 7 0.9012 -3.5497 8.7704 22 7 1.4397 -3.1811 7.6606 23 6 2.9367 -3.7374 -1.2515 24 6 2.0624 -3.7807 -2.4783 25 6 1.6861 -2.6051 -3.1007 26 6 0.8845 -2.6449 -4.2262 27 6 0.4598 -3.8602 -4.7297 28 6 0.8320 -5.0355 -4.1045 29 6 1.6372 -4.9960 -2.9815 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.5492 -4.6402 1.2025 33 1 3.5859 -2.8629 1.2928 34 1 1.4417 -2.8820 2.5381 35 1 1.4050 -4.6592 2.4477 36 1 3.8615 -3.8786 3.6013 37 1 3.8076 -4.8953 6.0960 38 1 3.8436 -3.1180 6.1870 39 1 3.0205 -5.8389 8.3426 40 1 3.5475 -4.6391 -1.2087 41 1 3.5841 -2.8618 -1.2975 42 1 2.0183 -1.6557 -2.7075 43 1 0.5902 -1.7264 -4.7122 44 1 -0.1668 -3.8912 -5.6089 45 1 0.4966 -5.9848 -4.4953 46 1 1.9312 -5.9144 -2.4952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700884611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:28 Heat of formation + Delta-G solvation = 96.138873 kcal Electronic energy + Delta-G solvation = -29085.718749 eV Core-core repulsion = 25012.530660 eV Total energy + Delta-G solvation = -4073.188088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.15455 -40.86108 -40.10847 -38.08744 -36.48257 -35.84340 -34.24949 -33.46481 -32.52631 -31.58941 -31.24465 -29.89014 -28.19652 -26.01524 -25.03095 -24.75235 -23.84391 -23.25132 -22.06077 -21.81464 -20.95826 -19.16111 -18.74599 -18.65363 -17.50251 -17.37545 -17.05335 -17.02629 -16.59484 -16.34877 -15.99232 -15.84847 -15.56293 -15.12795 -14.89515 -14.74952 -14.30730 -14.15272 -14.10018 -13.78879 -13.51450 -13.13884 -13.09258 -12.99966 -12.84798 -12.76212 -12.47667 -12.33255 -12.20170 -12.14106 -12.10769 -11.73887 -11.66608 -11.55756 -11.47110 -11.23726 -11.03062 -10.79405 -10.11373 -9.63281 -9.39454 -8.83758 -7.82843 -5.07356 0.29132 0.65013 0.71751 1.01620 1.26849 1.45257 1.45939 1.46338 1.53754 2.11901 2.61269 3.07584 3.31687 3.50435 3.53096 3.65351 3.95654 4.03281 4.04490 4.05595 4.18285 4.22631 4.31089 4.39664 4.41792 4.45630 4.63229 4.69392 4.73610 4.79806 4.84471 4.91335 5.00151 5.12741 5.18492 5.23692 5.30798 5.38186 5.45025 5.49410 5.55670 5.66045 5.73537 5.82182 6.04747 6.34766 6.37592 6.48589 7.19306 7.44719 7.59087 8.22278 8.43819 9.41147 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.002534 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.908941 B =11045.570710 C =12640.541083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.944 3.056 4 H -0.295 1.295 5 H -0.313 1.313 6 H -0.265 1.265 7 C -0.194 4.194 8 H 0.082 0.918 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.061 0.939 12 C -0.123 4.123 13 C 0.138 3.862 14 N -0.699 5.699 15 C 0.488 3.512 16 O -0.581 6.581 17 C 0.099 3.901 18 N -0.299 5.299 19 C 0.186 3.814 20 N -0.348 5.348 21 N -0.122 5.122 22 N -0.104 5.104 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.130 4.130 29 C -0.128 4.128 30 H 0.241 0.759 31 H 0.366 0.634 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.424 0.576 37 H 0.214 0.786 38 H 0.166 0.834 39 H 0.301 0.699 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.135 0.865 45 H 0.145 0.855 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.714 -17.965 2.865 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.776 3.224 4 H -0.223 1.223 5 H -0.240 1.240 6 H -0.190 1.190 7 C -0.326 4.326 8 H 0.100 0.900 9 N -0.361 5.361 10 C 0.069 3.931 11 H 0.079 0.921 12 C -0.163 4.163 13 C 0.014 3.986 14 N -0.352 5.352 15 C 0.272 3.728 16 O -0.460 6.460 17 C -0.024 4.024 18 N -0.102 5.102 19 C -0.112 4.112 20 N -0.196 5.196 21 N -0.116 5.116 22 N -0.091 5.091 23 C -0.123 4.123 24 C -0.072 4.072 25 C -0.127 4.127 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.148 4.148 29 C -0.146 4.146 30 H 0.050 0.950 31 H 0.196 0.804 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.262 0.738 37 H 0.231 0.769 38 H 0.183 0.817 39 H 0.316 0.684 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.000 -17.009 3.462 22.941 hybrid contribution 0.244 1.538 -0.726 1.718 sum 15.244 -15.471 2.736 21.891 Atomic orbital electron populations 1.69808 1.06515 1.24900 1.60938 1.25264 0.95751 1.00108 1.05569 0.85554 0.78143 0.81709 0.76960 1.22279 1.24050 1.18973 1.19297 0.91131 0.84393 1.37822 0.90029 1.42541 1.04939 1.00963 1.87690 1.20387 0.92997 0.87738 0.91959 0.92120 1.22104 0.98176 1.03095 0.92881 1.21048 0.93537 1.00054 0.83969 1.45701 1.11609 1.73372 1.04538 1.21057 0.88802 0.76751 0.86148 1.90873 1.17391 1.50746 1.86987 1.22565 0.90164 1.13294 0.76423 1.48456 1.25328 1.16693 1.19678 1.28864 0.99891 0.97976 0.84425 1.74848 1.09531 1.08810 1.26413 1.78656 1.20581 1.08007 1.04360 1.79009 1.02171 1.17216 1.10714 1.21069 0.96785 1.02408 0.92088 1.19982 0.98319 0.92700 0.96231 1.21137 0.98052 0.98458 0.95010 1.21290 0.99103 0.98522 0.97334 1.21300 1.00931 0.92392 1.01016 1.21386 0.98462 0.98638 0.96325 1.21312 0.98834 0.97491 0.96983 0.95019 0.80384 0.88031 0.91638 0.95070 0.92973 0.73792 0.76924 0.81710 0.68373 0.88641 0.92404 0.88505 0.87136 0.84755 0.83769 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 2 C -0.08 -4.10 5.50 84.87 0.47 -3.63 16 3 Si 0.94 45.00 29.55 68.60 2.03 47.03 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.19 -9.38 7.88 84.04 0.66 -8.72 16 8 H 0.08 3.70 6.64 -2.91 -0.02 3.68 16 9 N -0.72 -31.62 4.13 -322.94 -1.33 -32.96 16 10 C 0.18 5.55 2.67 44.99 0.12 5.67 16 11 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 12 C -0.12 -2.94 4.73 30.60 0.14 -2.80 16 13 C 0.14 3.88 5.56 86.38 0.48 4.36 16 14 N -0.70 -12.71 5.56 -463.06 -2.57 -15.28 16 15 C 0.49 10.56 7.85 87.66 0.69 11.25 16 16 O -0.58 -21.39 15.71 -3.05 -0.05 -21.44 16 17 C 0.10 0.79 6.96 85.63 0.60 1.39 16 18 N -0.30 -5.54 3.19 -355.57 -1.13 -6.67 16 19 C 0.19 2.57 12.79 180.27 2.31 4.88 16 20 N -0.35 -9.05 12.36 -60.29 -0.74 -9.79 16 21 N -0.12 -4.09 13.43 37.01 0.50 -3.59 16 22 N -0.10 -3.27 12.30 37.02 0.46 -2.81 16 23 C -0.08 -2.37 4.75 29.85 0.14 -2.22 16 24 C -0.07 -2.29 4.95 -19.86 -0.10 -2.39 16 25 C -0.11 -4.08 9.31 22.27 0.21 -3.87 16 26 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 27 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 28 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 29 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 30 H 0.24 14.66 8.31 -92.70 -0.77 13.89 16 31 H 0.37 18.87 8.03 -92.71 -0.74 18.12 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.73 7.11 -2.39 -0.02 1.71 16 34 H 0.03 1.26 7.75 -2.39 -0.02 1.25 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.42 3.39 8.47 -92.70 -0.79 2.60 16 37 H 0.21 -1.40 8.08 -2.39 -0.02 -1.42 16 38 H 0.17 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.30 -0.69 8.06 -2.91 -0.02 -0.71 16 40 H 0.10 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.06 1.83 7.05 -2.39 -0.02 1.81 16 42 H 0.10 4.27 7.37 -2.91 -0.02 4.25 16 43 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -93.12 393.15 3.53 -89.59 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.51 Total: 25.11 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.60 Total: -10.74 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -4.55 Total: -129.56 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -93.12 3.53 -89.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700884611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.733 kcal (2) G-P(sol) polarization free energy of solvation -93.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds