Wall clock time and date at job start Wed Apr 1 2020 04:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48491 * 109.47357 * 240.00549 * 3 2 1 5 5 H 1.48504 * 109.46549 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46694 * 120.00349 * 3 2 1 7 7 C 1.38814 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00534 * 197.01370 * 7 2 1 9 9 N 1.36940 * 119.99925 * 17.00826 * 7 2 1 10 10 C 1.47083 * 120.88555 * 206.58930 * 9 7 2 11 11 C 1.53232 * 108.52016 * 231.16711 * 10 9 7 12 12 N 1.46904 * 109.34078 * 306.16440 * 11 10 9 13 13 C 1.46900 * 111.00008 * 187.25946 * 12 11 10 14 14 C 1.52998 * 109.47329 * 170.00344 * 13 12 11 15 15 N 1.46491 * 109.47443 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00096 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.47583 * 119.99917 * 179.97438 * 16 15 14 19 19 C 1.36477 * 125.92118 * 179.97438 * 18 16 15 20 20 N 1.36186 * 107.01687 * 179.97438 * 19 18 16 21 21 C 1.36671 * 132.44681 * 180.02562 * 20 19 18 22 22 C 1.35478 * 119.10017 * 179.97438 * 21 20 19 23 23 C 1.40294 * 119.36015 * 359.97438 * 22 21 20 24 24 N 1.31142 * 120.41627 * 0.02562 * 23 22 21 25 25 C 1.34285 * 120.94121 * 359.97438 * 24 23 22 26 26 N 1.32212 * 131.65895 * 180.02562 * 25 24 23 27 27 C 1.46897 * 111.26530 * 63.10654 * 12 11 10 28 28 C 1.47087 * 120.87882 * 26.56839 * 9 7 2 29 29 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.62544 * 111.45280 * 10 9 7 31 31 H 1.09004 * 109.78230 * 350.97098 * 10 9 7 32 32 H 1.09004 * 109.49347 * 186.20943 * 11 10 9 33 33 H 1.09000 * 109.49660 * 66.12808 * 11 10 9 34 34 H 1.08997 * 109.47178 * 49.99677 * 13 12 11 35 35 H 1.09003 * 109.47162 * 290.00123 * 13 12 11 36 36 H 1.08998 * 109.47062 * 59.99322 * 14 13 12 37 37 H 1.09003 * 109.46818 * 299.99990 * 14 13 12 38 38 H 0.96999 * 119.99937 * 359.97438 * 15 14 13 39 39 H 1.08001 * 126.48607 * 359.96761 * 19 18 16 40 40 H 1.07998 * 120.45058 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.31774 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.79584 * 180.27258 * 23 22 21 43 43 H 1.09009 * 109.49187 * 56.86240 * 27 12 11 44 44 H 1.09002 * 109.49378 * 176.93141 * 27 12 11 45 45 H 1.09001 * 109.62707 * 248.54477 * 28 9 7 46 46 H 1.08994 * 109.62968 * 9.12517 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3620 -0.3480 10 6 1.8307 -3.6611 0.1655 11 6 2.0020 -4.6193 -1.0179 12 7 0.7543 -4.6642 -1.7921 13 6 0.8178 -5.6985 -2.8333 14 6 -0.5698 -5.8878 -3.4494 15 7 -0.5064 -6.9188 -4.4881 16 6 -1.6181 -7.2561 -5.1715 17 8 -2.6734 -6.7044 -4.9263 18 6 -1.5541 -8.2945 -6.2184 19 6 -2.5997 -8.7286 -6.9805 20 7 -2.1124 -9.6862 -7.8173 21 6 -2.7008 -10.4529 -8.7836 22 6 -1.9442 -11.3428 -9.4700 23 6 -0.5775 -11.4562 -9.1743 24 7 -0.0356 -10.7093 -8.2424 25 6 -0.7720 -9.8227 -7.5532 26 7 -0.4532 -8.9772 -6.5880 27 6 0.4397 -3.3518 -2.3721 28 6 0.2044 -2.3416 -1.2442 29 1 -0.4850 0.8401 0.0004 30 1 1.0919 -4.0635 0.8585 31 1 2.7848 -3.5382 0.6782 32 1 2.2360 -5.6172 -0.6471 33 1 2.8134 -4.2683 -1.6556 34 1 1.1508 -6.6380 -2.3923 35 1 1.5205 -5.3916 -3.6080 36 1 -0.9028 -4.9482 -3.8903 37 1 -1.2725 -6.1947 -2.6747 38 1 0.3356 -7.3587 -4.6841 39 1 -3.6203 -8.3790 -6.9294 40 1 -3.7543 -10.3503 -8.9977 41 1 -2.3888 -11.9584 -10.2381 42 1 0.0331 -12.1602 -9.7201 43 1 1.2728 -3.0185 -2.9911 44 1 -0.4593 -3.4304 -2.9835 45 1 -0.6908 -2.6172 -0.6867 46 1 0.0839 -1.3437 -1.6657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713074625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:27 Heat of formation + Delta-G solvation = 116.552337 kcal Electronic energy + Delta-G solvation = -28576.097680 eV Core-core repulsion = 24503.794786 eV Total energy + Delta-G solvation = -4072.302894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.57613 -39.85729 -38.53843 -38.04963 -35.42301 -35.18177 -33.90921 -31.81633 -31.30832 -29.95551 -29.88749 -28.88998 -26.34570 -25.36550 -23.90149 -23.59363 -22.95319 -22.45975 -21.24453 -20.53874 -19.11002 -18.98542 -18.21491 -17.38232 -16.94989 -16.76908 -16.32955 -16.02329 -15.52064 -14.99072 -14.92122 -14.61686 -14.47100 -14.31890 -14.03184 -13.66153 -13.60338 -13.41079 -13.37335 -12.95423 -12.87384 -12.54590 -12.33151 -11.58882 -11.38580 -11.24153 -11.17043 -11.00763 -10.69348 -10.51244 -10.45152 -10.32483 -10.22949 -10.01010 -9.76862 -9.69918 -9.58113 -9.07415 -8.77314 -8.45945 -7.82863 -6.61941 -5.73272 -3.14364 -0.16806 0.42380 1.55378 1.70187 2.80269 2.84444 3.07501 3.26640 3.41854 3.47535 3.48733 3.70383 3.80481 4.05987 4.37232 4.46057 4.54557 4.60292 4.75578 4.90160 4.96614 5.04708 5.23550 5.44058 5.46897 5.48526 5.60922 5.73804 5.86695 5.88332 5.96661 6.01518 6.10854 6.17551 6.26027 6.35893 6.39634 6.58994 6.74038 6.86751 6.97687 7.19765 7.29379 7.45374 7.60318 7.69183 7.74276 7.85856 8.04752 8.48320 9.26006 9.89544 10.48216 11.35534 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.001675 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.134027 B =16712.020680 C =17036.489800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.600 3.400 17 O -0.530 6.530 18 C 0.025 3.975 19 C -0.012 4.012 20 N -0.403 5.403 21 C 0.113 3.887 22 C -0.203 4.203 23 C 0.175 3.825 24 N -0.432 5.432 25 C 0.378 3.622 26 N -0.443 5.443 27 C 0.030 3.970 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.409 0.591 39 H 0.202 0.798 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.186 0.814 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -26.248 -21.765 34.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.085 4.085 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.383 3.617 17 O -0.406 6.406 18 C -0.109 4.109 19 C -0.148 4.148 20 N -0.080 5.080 21 C -0.018 4.018 22 C -0.226 4.226 23 C -0.014 4.014 24 N -0.143 5.143 25 C 0.029 3.971 26 N -0.167 5.167 27 C -0.099 4.099 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.244 0.756 39 H 0.219 0.781 40 H 0.196 0.804 41 H 0.186 0.814 42 H 0.203 0.797 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.302 -25.501 -20.429 33.102 hybrid contribution -0.165 0.680 -1.358 1.528 sum -5.467 -24.820 -21.788 33.476 Atomic orbital electron populations 1.70019 1.05183 1.25567 1.53969 1.25021 0.95302 0.98323 1.01079 0.86367 0.78884 0.83448 0.78052 1.21156 1.21629 1.20917 1.19152 0.92548 0.84846 1.41687 0.91710 1.44117 1.34146 1.01223 1.52380 1.20971 0.97825 0.86474 0.92543 1.22627 0.89297 0.99530 0.96878 1.61873 1.34663 1.05744 1.23135 1.22196 0.94939 0.97031 0.94322 1.21463 0.98420 0.90764 0.89619 1.45758 1.11647 1.40690 1.37771 1.16733 0.84163 0.80770 0.79987 1.90849 1.29299 1.53602 1.66849 1.20770 0.89430 1.00359 1.00369 1.22649 1.01664 0.94940 0.95502 1.43901 1.12559 1.26438 1.25104 1.22300 1.00562 0.90897 0.87993 1.21890 0.95651 1.01487 1.03587 1.23421 0.92881 0.94102 0.91019 1.67998 1.34693 1.04518 1.07121 1.21884 0.78005 0.99147 0.98098 1.70789 1.26736 1.07859 1.11290 1.23013 0.98865 0.89231 0.98766 1.20870 0.88988 0.96572 0.88391 0.93566 0.95604 0.92580 0.91930 0.95320 0.90697 0.94807 0.90728 0.90048 0.75586 0.78068 0.80362 0.81428 0.79738 0.95580 0.91744 0.95427 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.15 55.49 0.62 -26.09 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.09 9.63 -15.06 -0.15 -7.24 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.42 3.04 -172.01 -0.52 -15.94 16 10 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 11 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 12 N -0.53 -9.57 4.63 -234.32 -1.08 -10.65 16 13 C 0.04 0.63 5.08 -3.83 -0.02 0.61 16 14 C 0.12 1.72 5.60 -4.05 -0.02 1.69 16 15 N -0.71 -9.17 5.55 -61.34 -0.34 -9.51 16 16 C 0.60 8.38 7.82 -12.45 -0.10 8.28 16 17 O -0.53 -8.75 16.87 5.29 0.09 -8.66 16 18 C 0.02 0.30 6.94 -83.43 -0.58 -0.28 16 19 C -0.01 -0.11 11.47 -16.25 -0.19 -0.30 16 20 N -0.40 -3.28 2.93 -64.13 -0.19 -3.47 16 21 C 0.11 0.40 11.05 -16.38 -0.18 0.22 16 22 C -0.20 -0.39 10.06 -39.79 -0.40 -0.79 16 23 C 0.17 0.73 11.27 -17.07 -0.19 0.53 16 24 N -0.43 -4.07 10.48 -13.67 -0.14 -4.21 16 25 C 0.38 4.22 8.90 -322.41 -2.87 1.35 16 26 N -0.44 -5.77 11.01 -11.03 -0.12 -5.89 16 27 C 0.03 0.61 5.46 -3.71 -0.02 0.59 16 28 C 0.18 4.41 5.42 -3.60 -0.02 4.39 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 32 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 35 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 1.16 6.40 -51.93 -0.33 0.83 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.41 4.76 8.17 -40.82 -0.33 4.43 16 39 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.18 -0.06 8.06 -52.49 -0.42 -0.48 16 41 H 0.17 -0.34 8.06 -52.48 -0.42 -0.77 16 42 H 0.19 0.04 8.06 -52.49 -0.42 -0.39 16 43 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -36.86 380.55 -12.17 -49.04 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.32 Total: -0.40 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -4.86 Total: 13.04 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.78 Total: -75.78 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.86 -12.17 -49.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.588 kcal (2) G-P(sol) polarization free energy of solvation -36.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds