Wall clock time and date at job start Wed Apr 1 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48491 * 109.47357 * 240.00549 * 3 2 1 5 5 H 1.48504 * 109.46549 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46694 * 120.00349 * 3 2 1 7 7 C 1.38814 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00534 * 197.01370 * 7 2 1 9 9 N 1.36940 * 119.99925 * 17.00826 * 7 2 1 10 10 C 1.47083 * 120.88555 * 206.58930 * 9 7 2 11 11 C 1.53232 * 108.52016 * 231.16711 * 10 9 7 12 12 N 1.46904 * 109.34078 * 306.16440 * 11 10 9 13 13 C 1.46900 * 111.00008 * 187.25946 * 12 11 10 14 14 C 1.52998 * 109.47329 * 170.00344 * 13 12 11 15 15 N 1.46491 * 109.47443 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00096 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.47583 * 119.99917 * 179.97438 * 16 15 14 19 19 C 1.36477 * 125.92118 * 179.97438 * 18 16 15 20 20 N 1.36186 * 107.01687 * 179.97438 * 19 18 16 21 21 C 1.36671 * 132.44681 * 180.02562 * 20 19 18 22 22 C 1.35478 * 119.10017 * 179.97438 * 21 20 19 23 23 C 1.40294 * 119.36015 * 359.97438 * 22 21 20 24 24 N 1.31142 * 120.41627 * 0.02562 * 23 22 21 25 25 C 1.34285 * 120.94121 * 359.97438 * 24 23 22 26 26 N 1.32212 * 131.65895 * 180.02562 * 25 24 23 27 27 C 1.46897 * 111.26530 * 63.10654 * 12 11 10 28 28 C 1.47087 * 120.87882 * 26.56839 * 9 7 2 29 29 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.62544 * 111.45280 * 10 9 7 31 31 H 1.09004 * 109.78230 * 350.97098 * 10 9 7 32 32 H 1.09004 * 109.49347 * 186.20943 * 11 10 9 33 33 H 1.09000 * 109.49660 * 66.12808 * 11 10 9 34 34 H 1.08997 * 109.47178 * 49.99677 * 13 12 11 35 35 H 1.09003 * 109.47162 * 290.00123 * 13 12 11 36 36 H 1.08998 * 109.47062 * 59.99322 * 14 13 12 37 37 H 1.09003 * 109.46818 * 299.99990 * 14 13 12 38 38 H 0.96999 * 119.99937 * 359.97438 * 15 14 13 39 39 H 1.08001 * 126.48607 * 359.96761 * 19 18 16 40 40 H 1.07998 * 120.45058 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.31774 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.79584 * 180.27258 * 23 22 21 43 43 H 1.09009 * 109.49187 * 56.86240 * 27 12 11 44 44 H 1.09002 * 109.49378 * 176.93141 * 27 12 11 45 45 H 1.09001 * 109.62707 * 248.54477 * 28 9 7 46 46 H 1.08994 * 109.62968 * 9.12517 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3620 -0.3480 10 6 1.8307 -3.6611 0.1655 11 6 2.0020 -4.6193 -1.0179 12 7 0.7543 -4.6642 -1.7921 13 6 0.8178 -5.6985 -2.8333 14 6 -0.5698 -5.8878 -3.4494 15 7 -0.5064 -6.9188 -4.4881 16 6 -1.6181 -7.2561 -5.1715 17 8 -2.6734 -6.7044 -4.9263 18 6 -1.5541 -8.2945 -6.2184 19 6 -2.5997 -8.7286 -6.9805 20 7 -2.1124 -9.6862 -7.8173 21 6 -2.7008 -10.4529 -8.7836 22 6 -1.9442 -11.3428 -9.4700 23 6 -0.5775 -11.4562 -9.1743 24 7 -0.0356 -10.7093 -8.2424 25 6 -0.7720 -9.8227 -7.5532 26 7 -0.4532 -8.9772 -6.5880 27 6 0.4397 -3.3518 -2.3721 28 6 0.2044 -2.3416 -1.2442 29 1 -0.4850 0.8401 0.0004 30 1 1.0919 -4.0635 0.8585 31 1 2.7848 -3.5382 0.6782 32 1 2.2360 -5.6172 -0.6471 33 1 2.8134 -4.2683 -1.6556 34 1 1.1508 -6.6380 -2.3923 35 1 1.5205 -5.3916 -3.6080 36 1 -0.9028 -4.9482 -3.8903 37 1 -1.2725 -6.1947 -2.6747 38 1 0.3356 -7.3587 -4.6841 39 1 -3.6203 -8.3790 -6.9294 40 1 -3.7543 -10.3503 -8.9977 41 1 -2.3888 -11.9584 -10.2381 42 1 0.0331 -12.1602 -9.7201 43 1 1.2728 -3.0185 -2.9911 44 1 -0.4593 -3.4304 -2.9835 45 1 -0.6908 -2.6172 -0.6867 46 1 0.0839 -1.3437 -1.6657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713074625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:26 Heat of formation + Delta-G solvation = 90.423485 kcal Electronic energy + Delta-G solvation = -28577.230712 eV Core-core repulsion = 24503.794786 eV Total energy + Delta-G solvation = -4073.435926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.15007 -40.85137 -39.75815 -38.99271 -36.88440 -35.77635 -35.40409 -33.32712 -32.18901 -31.65773 -30.68903 -30.19089 -27.83431 -26.24914 -25.03634 -24.38584 -24.27885 -23.90317 -22.57155 -21.48382 -20.82687 -19.66744 -18.78622 -18.68825 -18.01133 -17.57818 -17.31771 -16.83887 -16.77223 -16.60571 -16.02819 -15.79133 -15.45540 -15.29976 -15.22606 -15.13767 -15.06885 -14.88752 -14.52828 -14.13246 -13.87381 -13.47716 -13.22521 -13.01418 -12.96799 -12.85535 -12.61210 -12.56780 -12.28517 -12.04285 -11.88297 -11.86416 -11.57122 -11.50780 -11.33523 -10.91290 -10.58134 -10.37392 -10.11147 -9.40820 -9.32797 -8.68739 -7.87291 -5.32118 -0.55534 -0.05446 0.82623 1.20058 1.46239 1.48982 1.55947 1.91293 2.16763 2.42950 2.51105 2.54403 3.03668 3.27680 3.33053 3.47596 3.63666 3.67809 3.81111 3.95033 4.04502 4.10419 4.28588 4.30476 4.34205 4.43927 4.54349 4.56844 4.63654 4.68828 4.70056 4.79584 4.89594 4.96105 5.02927 5.06537 5.17172 5.19857 5.25953 5.37295 5.47949 5.60961 5.67533 6.12428 6.18186 6.23438 6.37227 6.42041 6.75898 7.02772 7.12969 7.83895 8.38515 9.19603 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.001675 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.134027 B =16712.020680 C =17036.489800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.614 5.614 10 C 0.143 3.857 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.054 3.946 14 C 0.130 3.870 15 N -0.701 5.701 16 C 0.600 3.400 17 O -0.565 6.565 18 C -0.012 4.012 19 C 0.000 4.000 20 N -0.405 5.405 21 C 0.101 3.899 22 C -0.185 4.185 23 C 0.189 3.811 24 N -0.487 5.487 25 C 0.363 3.637 26 N -0.487 5.487 27 C 0.048 3.952 28 C 0.185 3.815 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.027 0.973 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.224 0.776 40 H 0.221 0.779 41 H 0.219 0.781 42 H 0.225 0.775 43 H 0.021 0.979 44 H 0.078 0.922 45 H -0.002 1.002 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -29.252 -24.545 38.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.072 4.072 12 N -0.265 5.265 13 C -0.074 4.074 14 C 0.006 3.994 15 N -0.352 5.352 16 C 0.386 3.614 17 O -0.444 6.444 18 C -0.144 4.144 19 C -0.137 4.137 20 N -0.081 5.081 21 C -0.028 4.028 22 C -0.207 4.207 23 C 0.002 3.998 24 N -0.200 5.200 25 C 0.013 3.987 26 N -0.212 5.212 27 C -0.081 4.081 28 C 0.059 3.941 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.045 0.955 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.253 0.747 39 H 0.241 0.759 40 H 0.237 0.763 41 H 0.236 0.764 42 H 0.241 0.759 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.017 0.983 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.014 -28.566 -23.234 37.161 hybrid contribution -0.272 1.349 -0.661 1.527 sum -5.286 -27.217 -23.895 36.602 Atomic orbital electron populations 1.70191 1.06708 1.25944 1.55383 1.25825 0.96084 1.01591 1.01305 0.85301 0.77508 0.79064 0.78328 1.20525 1.22003 1.19933 1.19524 0.92955 0.86005 1.41091 0.91310 1.44401 1.34150 1.02256 1.53023 1.21149 0.97629 0.85445 0.94079 1.22490 0.89062 1.00318 0.95357 1.61772 1.34986 1.05209 1.24491 1.22168 0.95000 0.96624 0.93647 1.21233 0.98179 0.90440 0.89517 1.45641 1.11969 1.40257 1.37301 1.17023 0.83644 0.80719 0.80038 1.90810 1.30365 1.55076 1.68119 1.20505 0.90786 1.01489 1.01625 1.22911 1.01742 0.94415 0.94625 1.44002 1.11834 1.26549 1.25738 1.23279 1.02761 0.90132 0.86612 1.22512 0.94384 1.00492 1.03282 1.24367 0.94670 0.92182 0.88547 1.68085 1.35807 1.06437 1.09710 1.22040 0.79404 0.99226 0.98044 1.70610 1.27670 1.09563 1.13311 1.22651 0.99371 0.89388 0.96718 1.20609 0.87942 0.96294 0.89235 0.94071 0.96553 0.91811 0.88253 0.95459 0.88251 0.93903 0.92287 0.91187 0.74736 0.75907 0.76289 0.76379 0.75879 0.96037 0.90422 0.98345 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.42 11.15 21.65 0.24 -57.17 16 2 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 3 Si 0.97 46.15 29.59 68.60 2.03 48.18 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.27 -15.16 9.63 84.03 0.81 -14.35 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -32.52 3.04 -698.13 -2.12 -34.64 16 10 C 0.14 6.18 6.69 86.35 0.58 6.75 16 11 C 0.06 1.97 5.62 86.38 0.49 2.46 16 12 N -0.54 -19.12 4.63 -895.26 -4.14 -23.26 16 13 C 0.05 1.47 5.08 86.30 0.44 1.91 16 14 C 0.13 3.74 5.60 86.38 0.48 4.22 16 15 N -0.70 -18.59 5.55 -466.24 -2.59 -21.18 16 16 C 0.60 17.49 7.82 86.71 0.68 18.17 16 17 O -0.56 -19.46 16.87 -4.00 -0.07 -19.52 16 18 C -0.01 -0.30 6.94 40.76 0.28 -0.02 16 19 C 0.00 -0.01 11.47 83.61 0.96 0.95 16 20 N -0.40 -5.99 2.93 -356.82 -1.05 -7.04 16 21 C 0.10 0.33 11.05 83.30 0.92 1.26 16 22 C -0.19 0.20 10.06 22.13 0.22 0.42 16 23 C 0.19 0.92 11.27 85.30 0.96 1.88 16 24 N -0.49 -8.61 10.48 -197.17 -2.07 -10.68 16 25 C 0.36 8.02 8.90 261.35 2.33 10.35 16 26 N -0.49 -13.16 11.01 -188.81 -2.08 -15.23 16 27 C 0.05 1.96 5.46 86.38 0.47 2.43 16 28 C 0.19 9.58 5.42 86.35 0.47 10.05 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 2.61 7.96 -2.39 -0.02 2.59 16 32 H 0.10 2.77 7.99 -2.39 -0.02 2.75 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 2.30 7.97 -2.39 -0.02 2.28 16 35 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 36 H 0.06 1.88 6.40 -2.39 -0.02 1.87 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.42 9.84 8.17 -92.71 -0.76 9.08 16 39 H 0.22 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.22 -1.24 8.06 -2.91 -0.02 -1.27 16 41 H 0.22 -2.45 8.06 -2.91 -0.02 -2.47 16 42 H 0.22 -0.95 8.06 -2.91 -0.02 -0.97 16 43 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 2.95 6.16 -2.39 -0.01 2.93 16 45 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.06 3.27 6.12 -2.39 -0.01 3.25 16 Total: -1.00 -86.61 380.55 -1.08 -87.69 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.26 Total: 9.01 kcal Atomic # 6 Polarization: 33.35 SS G_CDS: 10.50 Total: 43.86 kcal Atomic # 7 Polarization: -155.41 SS G_CDS: -13.80 Total: -169.22 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.07 Total: -19.52 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -86.61 -1.08 -87.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.114 kcal (2) G-P(sol) polarization free energy of solvation -86.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds