Wall clock time and date at job start Wed Apr 1 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99850 * 2 1 4 4 H 1.48504 * 109.46789 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46774 * 299.99803 * 3 2 1 6 6 H 1.48495 * 109.46926 * 60.00080 * 3 2 1 7 7 C 1.38817 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00412 * 197.03345 * 7 2 1 9 9 N 1.36939 * 119.99627 * 17.02698 * 7 2 1 10 10 C 1.47074 * 120.88149 * 206.58392 * 9 7 2 11 11 C 1.53239 * 108.52003 * 231.16536 * 10 9 7 12 12 N 1.46903 * 109.34144 * 306.16696 * 11 10 9 13 13 C 1.46897 * 111.00265 * 187.25626 * 12 11 10 14 14 C 1.52997 * 109.47186 * 170.00300 * 13 12 11 15 15 N 1.46501 * 109.47190 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99820 * 179.97438 * 15 14 13 17 17 O 1.21586 * 120.00466 * 359.97438 * 16 15 14 18 18 C 1.47504 * 119.99934 * 180.02562 * 16 15 14 19 19 C 1.36882 * 120.61380 * 179.97438 * 18 16 15 20 20 C 1.40127 * 119.25932 * 179.97438 * 19 18 16 21 21 N 1.31143 * 120.46493 * 0.02562 * 20 19 18 22 22 C 1.33697 * 121.18516 * 359.97438 * 21 20 19 23 23 C 1.39069 * 132.55709 * 180.02562 * 22 21 20 24 24 C 1.38509 * 107.66673 * 179.97438 * 23 22 21 25 25 N 1.31523 * 109.03913 * 359.97438 * 24 23 22 26 26 N 1.37292 * 120.63908 * 359.97438 * 22 21 20 27 27 C 1.46895 * 111.26495 * 63.10365 * 12 11 10 28 28 C 1.47086 * 120.88185 * 26.55856 * 9 7 2 29 29 H 0.96996 * 120.00073 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.63403 * 111.45545 * 10 9 7 31 31 H 1.09002 * 109.79108 * 350.96912 * 10 9 7 32 32 H 1.09008 * 109.49289 * 186.20994 * 11 10 9 33 33 H 1.09004 * 109.49500 * 66.13043 * 11 10 9 34 34 H 1.08995 * 109.47133 * 49.99555 * 13 12 11 35 35 H 1.08999 * 109.46870 * 289.99888 * 13 12 11 36 36 H 1.08997 * 109.47218 * 59.99373 * 14 13 12 37 37 H 1.09005 * 109.47081 * 299.99960 * 14 13 12 38 38 H 0.96997 * 119.99572 * 0.02562 * 15 14 13 39 39 H 1.07998 * 120.36643 * 0.02562 * 19 18 16 40 40 H 1.08002 * 119.77212 * 180.02562 * 20 19 18 41 41 H 1.07990 * 126.16862 * 359.97396 * 23 22 21 42 42 H 1.07997 * 125.47470 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.49635 * 56.85827 * 27 12 11 44 44 H 1.09003 * 109.49362 * 176.93478 * 27 12 11 45 45 H 1.08998 * 109.62966 * 248.54672 * 28 9 7 46 46 H 1.09008 * 109.62413 * 9.12938 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2745 9 7 1.3707 -2.3622 -0.3462 10 6 1.8310 -3.6609 0.1683 11 6 2.0026 -4.6199 -1.0145 12 7 0.7550 -4.6655 -1.7889 13 6 0.8187 -5.7005 -2.8294 14 6 -0.5688 -5.8902 -3.4456 15 7 -0.5051 -6.9220 -4.4837 16 6 -1.6166 -7.2598 -5.1670 17 8 -2.6722 -6.7087 -4.9217 18 6 -1.5527 -8.2990 -6.2118 19 6 -2.6739 -8.6523 -6.9131 20 6 -2.5807 -9.6428 -7.9000 21 7 -1.4332 -10.2264 -8.1500 22 6 -0.3269 -9.8955 -7.4762 23 6 0.9862 -10.3487 -7.5432 24 6 1.7216 -9.6470 -6.6024 25 7 0.9278 -8.8034 -5.9794 26 7 -0.3644 -8.9306 -6.5002 27 6 0.4404 -3.3535 -2.3699 28 6 0.2047 -2.3425 -1.2426 29 1 -0.4850 0.8400 -0.0004 30 1 1.0920 -4.0630 0.8614 31 1 2.7849 -3.5376 0.6811 32 1 2.2366 -5.6176 -0.6429 33 1 2.8140 -4.2693 -1.6524 34 1 1.1517 -6.6396 -2.3877 35 1 1.5215 -5.3940 -3.6042 36 1 -0.9017 -4.9510 -3.8872 37 1 -1.2716 -6.1967 -2.6708 38 1 0.3368 -7.3624 -4.6787 39 1 -3.6195 -8.1724 -6.7087 40 1 -3.4600 -9.9276 -8.4586 41 1 1.3643 -11.1104 -8.2088 42 1 2.7771 -9.7724 -6.4112 43 1 1.2735 -3.0205 -2.9888 44 1 -0.4585 -3.4326 -2.9813 45 1 -0.6905 -2.6178 -0.6851 46 1 0.0843 -1.3448 -1.6648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713074717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:18 Heat of formation + Delta-G solvation = 133.280060 kcal Electronic energy + Delta-G solvation = -29303.105326 eV Core-core repulsion = 25231.527800 eV Total energy + Delta-G solvation = -4071.577526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.86936 -40.06283 -38.55504 -38.18229 -35.60063 -34.66942 -33.95847 -31.57894 -31.46521 -29.95865 -29.66069 -29.14447 -26.57865 -25.42240 -23.92676 -23.42603 -22.74490 -22.40523 -21.35947 -20.99241 -19.15979 -18.94714 -17.92705 -17.43538 -16.85344 -16.75483 -16.24617 -15.81619 -15.64928 -15.10116 -14.79543 -14.59441 -14.37153 -14.20795 -14.00618 -13.71512 -13.55434 -13.47188 -13.43979 -13.18910 -12.96124 -12.60936 -11.86576 -11.71328 -11.64179 -11.45453 -11.34846 -11.08287 -10.85054 -10.76441 -10.46023 -10.38709 -10.29466 -10.08331 -10.06729 -9.76838 -9.64210 -9.29375 -8.51804 -8.50288 -7.91713 -6.67626 -5.78323 -3.19582 -0.42025 0.28903 1.37294 1.91864 2.43641 2.50580 2.96666 3.28107 3.36830 3.44621 3.46729 3.49549 3.91288 4.32172 4.39059 4.47785 4.50642 4.69472 4.86469 4.89819 4.99600 5.10136 5.25107 5.38868 5.40769 5.42747 5.48895 5.77650 5.77844 5.84922 5.88747 5.94683 5.98557 6.07739 6.14219 6.20890 6.30981 6.51869 6.66825 6.78089 6.91297 6.99531 7.14095 7.22741 7.50251 7.61790 7.68205 7.71623 7.80920 8.43011 9.20825 9.84223 10.42621 11.30549 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.002016 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.860795 B =13887.062116 C =14501.173231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.528 5.528 13 C 0.046 3.954 14 C 0.117 3.883 15 N -0.704 5.704 16 C 0.556 3.444 17 O -0.512 6.512 18 C 0.145 3.855 19 C -0.152 4.152 20 C 0.179 3.821 21 N -0.448 5.448 22 C 0.256 3.744 23 C -0.253 4.253 24 C 0.098 3.902 25 N -0.322 5.322 26 N -0.305 5.305 27 C 0.030 3.970 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.167 0.833 42 H 0.204 0.796 43 H 0.026 0.974 44 H 0.063 0.937 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -22.756 -16.915 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.083 4.083 14 C -0.006 4.006 15 N -0.360 5.360 16 C 0.338 3.662 17 O -0.387 6.387 18 C 0.027 3.973 19 C -0.177 4.177 20 C -0.006 4.006 21 N -0.159 5.159 22 C 0.028 3.972 23 C -0.284 4.284 24 C -0.078 4.078 25 N -0.148 5.148 26 N -0.079 5.079 27 C -0.099 4.099 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.257 0.743 39 H 0.200 0.800 40 H 0.208 0.792 41 H 0.184 0.816 42 H 0.220 0.780 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.459 -22.049 -16.006 27.357 hybrid contribution 1.422 0.806 -0.748 1.797 sum -1.038 -21.243 -16.754 27.075 Atomic orbital electron populations 1.70034 1.05197 1.25391 1.54086 1.25035 0.95320 0.98377 1.01076 0.86229 0.79294 0.84007 0.77289 1.20328 1.21588 1.21693 1.19230 0.92596 0.84753 1.41534 0.91588 1.44137 1.34154 1.01275 1.52345 1.20971 0.97879 0.86461 0.92499 1.22637 0.89228 0.99575 0.96890 1.61878 1.34773 1.05700 1.23014 1.22166 0.94667 0.97125 0.94378 1.21541 0.98807 0.90645 0.89571 1.46286 1.12122 1.40354 1.37261 1.17471 0.85106 0.82218 0.81397 1.90900 1.28874 1.52843 1.66105 1.20875 0.83233 0.95194 0.98024 1.22236 0.98963 0.99860 0.96678 1.23513 0.95540 0.89163 0.92396 1.67989 0.97606 1.25947 1.24341 1.20799 0.95589 0.91178 0.89659 1.21075 0.88892 1.09886 1.08521 1.23856 1.00264 0.91365 0.92279 1.77308 0.85266 1.27487 1.24737 1.47412 1.07473 1.26627 1.26367 1.23021 0.98822 0.89234 0.98817 1.20872 0.89012 0.96553 0.88372 0.93637 0.95589 0.92513 0.91920 0.95273 0.90711 0.94812 0.90471 0.89795 0.74302 0.79994 0.79209 0.81565 0.77965 0.95537 0.91829 0.95409 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.15 55.49 0.62 -25.79 16 2 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.96 9.63 -15.06 -0.15 -7.10 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -15.18 3.04 -172.01 -0.52 -15.71 16 10 C 0.15 3.16 6.69 -3.61 -0.02 3.14 16 11 C 0.05 0.82 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.30 4.63 -234.32 -1.08 -10.38 16 13 C 0.05 0.64 5.08 -3.83 -0.02 0.62 16 14 C 0.12 1.62 5.61 -4.04 -0.02 1.60 16 15 N -0.70 -8.85 5.55 -61.36 -0.34 -9.19 16 16 C 0.56 7.11 7.79 -12.48 -0.10 7.01 16 17 O -0.51 -7.71 16.36 5.29 0.09 -7.63 16 18 C 0.14 1.52 6.82 -81.98 -0.56 0.96 16 19 C -0.15 -1.11 9.61 -39.36 -0.38 -1.48 16 20 C 0.18 1.05 11.26 -17.14 -0.19 0.85 16 21 N -0.45 -3.94 10.44 -12.24 -0.13 -4.06 16 22 C 0.26 2.55 7.93 -155.57 -1.23 1.32 16 23 C -0.25 -2.04 10.91 -39.17 -0.43 -2.47 16 24 C 0.10 0.74 11.94 -17.58 -0.21 0.53 16 25 N -0.32 -3.30 9.92 30.46 0.30 -3.00 16 26 N -0.30 -3.26 3.94 -8.87 -0.03 -3.30 16 27 C 0.03 0.59 5.46 -3.70 -0.02 0.57 16 28 C 0.18 4.33 5.42 -3.60 -0.02 4.31 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 32 H 0.06 0.94 7.99 -51.92 -0.41 0.53 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.95 7.97 -51.93 -0.41 0.53 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.08 1.15 6.40 -51.93 -0.33 0.82 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.42 4.89 5.50 -40.82 -0.22 4.67 16 39 H 0.18 0.98 7.65 -52.49 -0.40 0.58 16 40 H 0.19 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 2.40 6.12 -51.92 -0.32 2.08 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -34.22 375.58 -10.12 -44.34 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.19 Total: 1.72 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: -3.46 Total: 10.58 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.19 Total: -71.43 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.22 -10.12 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.618 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds