Wall clock time and date at job start Wed Apr 1 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.52998 * 109.47355 * 294.30335 * 13 12 11 15 15 N 1.46502 * 109.46797 * 180.02562 * 14 13 12 16 16 C 1.34783 * 119.99385 * 180.02562 * 15 14 13 17 17 O 1.21571 * 120.00547 * 359.97438 * 16 15 14 18 18 C 1.47690 * 119.99443 * 180.02562 * 16 15 14 19 19 C 1.40186 * 120.41280 * 359.97438 * 18 16 15 20 20 N 1.31189 * 121.37494 * 179.97438 * 19 18 16 21 21 C 1.32928 * 121.84360 * 0.02562 * 20 19 18 22 22 N 1.36630 * 133.26468 * 180.02562 * 21 20 19 23 23 H 0.97000 * 125.34206 * 359.96329 * 22 21 20 24 24 N 1.39800 * 109.31676 * 179.97438 * 22 21 20 25 25 C 1.30197 * 110.13478 * 0.02562 * 24 22 21 26 26 C 1.41064 * 120.20458 * 359.97438 * 21 20 19 27 27 C 1.39509 * 120.40741 * 179.72399 * 18 16 15 28 28 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 29 29 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 30 30 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 32 32 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 33 33 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 34 34 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 35 35 H 1.08998 * 109.46930 * 54.30855 * 13 12 11 36 36 H 1.09005 * 109.46997 * 174.30484 * 13 12 11 37 37 H 1.08998 * 109.46978 * 299.99622 * 14 13 12 38 38 H 1.08995 * 109.47116 * 60.00155 * 14 13 12 39 39 H 0.96989 * 120.00400 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.31120 * 0.02562 * 19 18 16 41 41 H 1.08001 * 126.21147 * 180.02562 * 25 24 22 42 42 H 1.07998 * 121.02524 * 359.97438 * 27 18 16 43 43 H 1.09002 * 109.49046 * 303.14169 * 28 12 11 44 44 H 1.08999 * 109.49556 * 183.06363 * 28 12 11 45 45 H 1.08998 * 109.62919 * 350.89226 * 29 9 7 46 46 H 1.09001 * 109.62891 * 111.47641 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.5521 -5.8873 -3.4628 15 7 -0.4831 -6.9200 -4.4997 16 6 -1.5904 -7.2561 -5.1906 17 8 -2.6465 -6.7027 -4.9532 18 6 -1.5210 -8.2975 -6.2355 19 6 -0.3079 -8.9416 -6.5161 20 7 -0.2249 -9.8695 -7.4397 21 6 -1.2813 -10.2446 -8.1540 22 7 -1.4604 -11.1633 -9.1494 23 1 -0.7679 -11.7342 -9.5172 24 7 -2.7983 -11.1510 -9.5547 25 6 -3.4674 -10.2721 -8.8656 26 6 -2.5381 -9.6439 -7.9314 27 6 -2.6631 -8.6562 -6.9520 28 6 2.0050 -4.6199 -1.0153 29 6 1.8270 -3.6607 0.1664 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6890 -2.6165 -0.6952 32 1 0.0878 -1.3412 -1.6703 33 1 1.2904 -3.0196 -2.9943 34 1 -0.4421 -3.4299 -2.9977 35 1 1.5398 -5.3934 -3.6080 36 1 1.1608 -6.6387 -2.3940 37 1 -1.2601 -6.1931 -2.6926 38 1 -0.8812 -4.9478 -3.9066 39 1 0.3595 -7.3613 -4.6894 40 1 0.5766 -8.6687 -5.9596 41 1 -4.5194 -10.0492 -8.9658 42 1 -3.6139 -8.1825 -6.7573 43 1 2.8209 -4.2701 -1.6479 44 1 2.2356 -5.6177 -0.6422 45 1 2.7785 -3.5357 0.6831 46 1 1.0831 -4.0619 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713074897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:29 Heat of formation + Delta-G solvation = 105.985180 kcal Electronic energy + Delta-G solvation = -28539.380394 eV Core-core repulsion = 24466.619274 eV Total energy + Delta-G solvation = -4072.761121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15127 -40.08677 -38.41038 -38.01434 -35.53302 -34.04894 -33.70830 -31.64710 -31.23301 -30.82006 -29.92309 -28.74667 -26.07350 -24.53884 -24.33336 -23.20325 -22.58719 -22.40360 -21.38023 -20.94283 -19.13633 -18.97227 -18.20796 -17.20309 -16.80634 -16.41366 -16.03172 -15.79715 -15.56393 -14.97356 -14.76042 -14.57281 -14.34012 -14.26328 -13.88761 -13.69395 -13.62047 -13.47244 -13.42773 -13.09446 -12.92940 -12.53833 -11.78468 -11.66605 -11.44257 -11.38729 -11.24155 -11.05586 -10.72980 -10.58463 -10.46841 -10.31452 -10.06504 -9.93264 -9.75312 -9.70323 -9.63524 -9.27207 -8.98747 -8.50059 -7.90673 -6.66495 -5.77504 -3.19036 0.17891 0.29505 1.77869 1.83823 2.52623 2.80836 3.36151 3.38711 3.44782 3.45536 3.63710 3.77599 3.98836 4.23224 4.24764 4.45607 4.51571 4.62087 4.73299 4.93024 5.07152 5.14416 5.39665 5.41490 5.46385 5.48765 5.55108 5.80259 5.82565 5.89695 5.93187 6.02123 6.09671 6.18215 6.25719 6.32076 6.44685 6.53245 6.67181 6.70793 6.91977 7.21004 7.23924 7.27567 7.52655 7.62876 7.69012 7.81216 7.95884 8.44128 9.21671 9.85041 10.43608 11.31197 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.001669 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.261313 B =16775.018412 C =17155.928564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.178 3.822 11 C 0.030 3.970 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.121 3.879 15 N -0.723 5.723 16 C 0.569 3.431 17 O -0.532 6.532 18 C -0.230 4.230 19 C 0.206 3.794 20 N -0.506 5.506 21 C 0.331 3.669 22 N -0.491 5.491 23 H 0.446 0.554 24 N -0.236 5.236 25 C 0.102 3.898 26 C -0.238 4.238 27 C 0.074 3.926 28 C 0.047 3.953 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.397 0.603 40 H 0.170 0.830 41 H 0.208 0.792 42 H 0.158 0.842 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -22.459 -17.007 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.099 4.099 12 N -0.254 5.254 13 C -0.085 4.085 14 C -0.002 4.002 15 N -0.375 5.375 16 C 0.355 3.645 17 O -0.409 6.409 18 C -0.238 4.238 19 C 0.036 3.964 20 N -0.220 5.220 21 C 0.090 3.910 22 N -0.208 5.208 23 H 0.292 0.708 24 N -0.049 5.049 25 C -0.098 4.098 26 C -0.248 4.248 27 C 0.046 3.954 28 C -0.083 4.083 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.186 0.814 41 H 0.224 0.776 42 H 0.175 0.825 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.255 -23.358 -17.647 29.455 hybrid contribution 1.267 1.483 -0.099 1.953 sum -1.988 -21.875 -17.746 28.238 Atomic orbital electron populations 1.70015 1.05192 1.25632 1.53836 1.25028 0.95302 0.98349 1.00980 0.86373 0.78901 0.83437 0.78063 1.21147 1.21607 1.20893 1.19140 0.92538 0.84854 1.41827 0.91717 1.44136 1.34421 1.01252 1.52053 1.20965 0.89006 0.96559 0.88297 1.23092 0.98830 0.89192 0.98756 1.61867 1.35049 1.05755 1.22758 1.22209 0.94954 0.97049 0.94332 1.21440 0.98337 0.90787 0.89638 1.45838 1.11350 1.41509 1.38823 1.17749 0.83995 0.81923 0.80834 1.90826 1.28984 1.53914 1.67147 1.20690 0.95681 1.03880 1.03504 1.22880 0.96402 0.87272 0.89867 1.66712 1.29591 1.17006 1.08697 1.19199 0.90734 0.90675 0.90359 1.45871 1.08564 1.34820 1.31572 0.70784 1.76767 0.87854 1.19921 1.20364 1.25223 1.00191 0.92445 0.91913 1.20490 0.94950 1.04887 1.04442 1.21221 0.98867 0.88545 0.86796 1.22625 0.89319 0.99518 0.96825 1.20982 0.97866 0.86514 0.92521 0.93521 0.95371 0.89323 0.95545 0.91760 0.94904 0.90782 0.90091 0.90742 0.76862 0.81356 0.77560 0.82482 0.95339 0.91958 0.92557 0.95588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.16 55.49 0.62 -25.55 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.60 -14.92 3.03 -171.73 -0.52 -15.44 16 10 C 0.18 4.25 5.45 -3.36 -0.02 4.23 16 11 C 0.03 0.57 5.48 -3.47 -0.02 0.55 16 12 N -0.53 -8.81 4.63 -234.04 -1.08 -9.89 16 13 C 0.04 0.53 5.08 -3.83 -0.02 0.51 16 14 C 0.12 1.46 5.61 -4.04 -0.02 1.44 16 15 N -0.72 -6.76 5.51 -61.30 -0.34 -7.09 16 16 C 0.57 6.25 7.77 -12.40 -0.10 6.15 16 17 O -0.53 -7.92 16.40 5.30 0.09 -7.83 16 18 C -0.23 -2.00 5.89 -104.83 -0.62 -2.62 16 19 C 0.21 1.53 10.69 -17.10 -0.18 1.34 16 20 N -0.51 -4.46 10.37 -12.03 -0.12 -4.58 16 21 C 0.33 2.90 8.47 -156.09 -1.32 1.58 16 22 N -0.49 -3.60 7.33 31.15 0.23 -3.37 16 23 H 0.45 2.18 8.96 -182.82 -1.64 0.55 16 24 N -0.24 -1.79 12.54 31.87 0.40 -1.39 16 25 C 0.10 0.62 12.30 -15.15 -0.19 0.43 16 26 C -0.24 -1.88 6.36 -105.20 -0.67 -2.55 16 27 C 0.07 0.61 9.76 -38.58 -0.38 0.23 16 28 C 0.05 0.79 5.62 -3.71 -0.02 0.77 16 29 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.35 6.12 -51.93 -0.32 2.04 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.11 6.16 -51.93 -0.32 0.79 16 35 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 36 H 0.07 0.77 7.97 -51.93 -0.41 0.36 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.03 6.40 -51.93 -0.33 0.70 16 39 H 0.40 2.41 6.51 -40.82 -0.27 2.15 16 40 H 0.17 0.71 6.39 -52.48 -0.34 0.37 16 41 H 0.21 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.16 1.12 7.72 -52.49 -0.41 0.71 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 45 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -34.65 376.86 -11.25 -45.90 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.36 Total: -1.00 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -3.81 Total: 8.00 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.82 Total: -67.32 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.65 -11.25 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.888 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds