Wall clock time and date at job start Wed Apr 1 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.52998 * 109.47355 * 294.30335 * 13 12 11 15 15 N 1.46502 * 109.46797 * 180.02562 * 14 13 12 16 16 C 1.34783 * 119.99385 * 180.02562 * 15 14 13 17 17 O 1.21571 * 120.00547 * 359.97438 * 16 15 14 18 18 C 1.47690 * 119.99443 * 180.02562 * 16 15 14 19 19 C 1.40186 * 120.41280 * 359.97438 * 18 16 15 20 20 N 1.31189 * 121.37494 * 179.97438 * 19 18 16 21 21 C 1.32928 * 121.84360 * 0.02562 * 20 19 18 22 22 N 1.36630 * 133.26468 * 180.02562 * 21 20 19 23 23 H 0.97000 * 125.34206 * 359.96329 * 22 21 20 24 24 N 1.39800 * 109.31676 * 179.97438 * 22 21 20 25 25 C 1.30197 * 110.13478 * 0.02562 * 24 22 21 26 26 C 1.41064 * 120.20458 * 359.97438 * 21 20 19 27 27 C 1.39509 * 120.40741 * 179.72399 * 18 16 15 28 28 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 29 29 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 30 30 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 32 32 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 33 33 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 34 34 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 35 35 H 1.08998 * 109.46930 * 54.30855 * 13 12 11 36 36 H 1.09005 * 109.46997 * 174.30484 * 13 12 11 37 37 H 1.08998 * 109.46978 * 299.99622 * 14 13 12 38 38 H 1.08995 * 109.47116 * 60.00155 * 14 13 12 39 39 H 0.96989 * 120.00400 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.31120 * 0.02562 * 19 18 16 41 41 H 1.08001 * 126.21147 * 180.02562 * 25 24 22 42 42 H 1.07998 * 121.02524 * 359.97438 * 27 18 16 43 43 H 1.09002 * 109.49046 * 303.14169 * 28 12 11 44 44 H 1.08999 * 109.49556 * 183.06363 * 28 12 11 45 45 H 1.08998 * 109.62919 * 350.89226 * 29 9 7 46 46 H 1.09001 * 109.62891 * 111.47641 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.5521 -5.8873 -3.4628 15 7 -0.4831 -6.9200 -4.4997 16 6 -1.5904 -7.2561 -5.1906 17 8 -2.6465 -6.7027 -4.9532 18 6 -1.5210 -8.2975 -6.2355 19 6 -0.3079 -8.9416 -6.5161 20 7 -0.2249 -9.8695 -7.4397 21 6 -1.2813 -10.2446 -8.1540 22 7 -1.4604 -11.1633 -9.1494 23 1 -0.7679 -11.7342 -9.5172 24 7 -2.7983 -11.1510 -9.5547 25 6 -3.4674 -10.2721 -8.8656 26 6 -2.5381 -9.6439 -7.9314 27 6 -2.6631 -8.6562 -6.9520 28 6 2.0050 -4.6199 -1.0153 29 6 1.8270 -3.6607 0.1664 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6890 -2.6165 -0.6952 32 1 0.0878 -1.3412 -1.6703 33 1 1.2904 -3.0196 -2.9943 34 1 -0.4421 -3.4299 -2.9977 35 1 1.5398 -5.3934 -3.6080 36 1 1.1608 -6.6387 -2.3940 37 1 -1.2601 -6.1931 -2.6926 38 1 -0.8812 -4.9478 -3.9066 39 1 0.3595 -7.3613 -4.6894 40 1 0.5766 -8.6687 -5.9596 41 1 -4.5194 -10.0492 -8.9658 42 1 -3.6139 -8.1825 -6.7573 43 1 2.8209 -4.2701 -1.6479 44 1 2.2356 -5.6177 -0.6422 45 1 2.7785 -3.5357 0.6831 46 1 1.0831 -4.0619 0.8547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713074897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:28 Heat of formation + Delta-G solvation = 79.762949 kcal Electronic energy + Delta-G solvation = -28540.517475 eV Core-core repulsion = 24466.619274 eV Total energy + Delta-G solvation = -4073.898202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.71610 -40.91948 -39.70801 -38.80869 -36.84881 -35.46623 -34.31472 -33.32242 -31.80704 -31.68784 -31.58328 -29.95901 -27.63441 -25.46312 -25.02112 -24.62414 -24.18304 -22.95774 -22.56163 -21.75554 -20.80098 -19.58489 -18.95735 -18.66030 -17.84905 -17.21120 -16.95411 -16.74247 -16.51210 -16.38481 -15.93798 -15.72867 -15.46414 -15.26866 -15.07513 -15.00702 -14.81221 -14.66674 -14.37684 -14.18545 -14.09288 -13.66824 -13.18971 -12.96101 -12.78899 -12.57732 -12.52889 -12.33569 -12.26238 -12.00736 -11.88555 -11.82614 -11.53098 -11.46608 -11.29991 -10.62068 -10.56358 -10.28220 -10.17017 -9.61403 -9.25870 -8.66022 -7.85871 -5.30712 -0.38221 -0.33876 1.27307 1.33685 1.47524 1.49856 1.56778 1.76098 1.96729 2.52216 2.70028 3.07910 3.16714 3.24764 3.29759 3.46546 3.64106 3.71308 3.75392 3.89225 4.03357 4.13766 4.25269 4.33427 4.39112 4.52065 4.54805 4.59415 4.68789 4.75222 4.83677 4.90347 4.98305 5.04794 5.06466 5.09240 5.24187 5.28906 5.35833 5.40694 5.62929 5.70923 5.96878 6.17688 6.18040 6.27534 6.39201 6.49005 6.71637 7.14887 7.16714 7.86348 8.40335 9.20593 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029061 B = 0.001669 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.261313 B =16775.018412 C =17155.928564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.614 5.614 10 C 0.184 3.816 11 C 0.050 3.950 12 N -0.543 5.543 13 C 0.052 3.948 14 C 0.130 3.870 15 N -0.707 5.707 16 C 0.572 3.428 17 O -0.578 6.578 18 C -0.240 4.240 19 C 0.215 3.785 20 N -0.520 5.520 21 C 0.317 3.683 22 N -0.490 5.490 23 H 0.454 0.546 24 N -0.257 5.257 25 C 0.113 3.887 26 C -0.249 4.249 27 C 0.076 3.924 28 C 0.059 3.941 29 C 0.140 3.860 30 H 0.250 0.750 31 H -0.003 1.003 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.416 0.584 40 H 0.201 0.799 41 H 0.244 0.756 42 H 0.163 0.837 43 H 0.028 0.972 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -24.330 -18.133 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.338 5.338 10 C 0.058 3.942 11 C -0.080 4.080 12 N -0.268 5.268 13 C -0.076 4.076 14 C 0.006 3.994 15 N -0.360 5.360 16 C 0.359 3.641 17 O -0.458 6.458 18 C -0.248 4.248 19 C 0.044 3.956 20 N -0.235 5.235 21 C 0.076 3.924 22 N -0.207 5.207 23 H 0.301 0.699 24 N -0.069 5.069 25 C -0.086 4.086 26 C -0.259 4.259 27 C 0.047 3.953 28 C -0.070 4.070 29 C 0.015 3.985 30 H 0.059 0.941 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.217 0.783 41 H 0.260 0.740 42 H 0.180 0.820 43 H 0.047 0.953 44 H 0.120 0.880 45 H 0.080 0.920 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.652 -25.301 -18.797 31.563 hybrid contribution 0.761 1.974 0.271 2.133 sum -0.890 -23.328 -18.526 29.803 Atomic orbital electron populations 1.70187 1.06702 1.25903 1.55452 1.25811 0.96046 1.01555 1.01384 0.85330 0.77523 0.79185 0.78337 1.20446 1.22152 1.20008 1.19512 0.92924 0.86051 1.40951 0.91329 1.44425 1.34410 1.02276 1.52731 1.20711 0.87865 0.96372 0.89295 1.22690 0.99365 0.89429 0.96481 1.61739 1.35336 1.05237 1.24481 1.22223 0.95071 0.96650 0.93691 1.21164 0.98062 0.90558 0.89651 1.45595 1.11992 1.40683 1.37727 1.18041 0.83490 0.81723 0.80831 1.90808 1.30724 1.55663 1.68601 1.20530 0.96683 1.04045 1.03551 1.23317 0.96840 0.86176 0.89264 1.66793 1.29739 1.17658 1.09295 1.19499 0.91229 0.91041 0.90664 1.45948 1.08886 1.34660 1.31250 0.69900 1.76770 0.88029 1.20898 1.21232 1.25856 1.01433 0.90986 0.90329 1.20661 0.95327 1.05058 1.04894 1.21356 0.99110 0.88293 0.86500 1.22460 0.89186 1.00235 0.95150 1.21180 0.97498 0.85535 0.94303 0.94118 0.98516 0.92722 0.95859 0.90470 0.93311 0.87698 0.91749 0.92792 0.74597 0.78258 0.74035 0.81965 0.95333 0.88039 0.91985 0.96723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 11.16 21.65 0.24 -56.03 16 2 C -0.05 -2.97 4.93 84.86 0.42 -2.55 16 3 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.26 -14.62 9.63 84.03 0.81 -13.81 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 9 N -0.61 -31.21 3.03 -697.24 -2.11 -33.32 16 10 C 0.18 9.09 5.45 86.50 0.47 9.56 16 11 C 0.05 1.86 5.48 86.54 0.47 2.34 16 12 N -0.54 -16.95 4.63 -894.35 -4.14 -21.09 16 13 C 0.05 1.08 5.08 86.30 0.44 1.52 16 14 C 0.13 2.91 5.61 86.38 0.48 3.39 16 15 N -0.71 -11.53 5.51 -466.12 -2.57 -14.10 16 16 C 0.57 11.85 7.77 86.74 0.67 12.53 16 17 O -0.58 -17.18 16.40 -3.94 -0.06 -17.25 16 18 C -0.24 -3.81 5.89 -20.00 -0.12 -3.93 16 19 C 0.21 2.67 10.69 85.26 0.91 3.58 16 20 N -0.52 -8.22 10.37 -191.96 -1.99 -10.21 16 21 C 0.32 5.12 8.47 134.17 1.14 6.26 16 22 N -0.49 -6.63 7.33 -55.36 -0.41 -7.03 16 23 H 0.45 4.05 8.96 -213.51 -1.91 2.14 16 24 N -0.26 -3.52 12.54 -53.08 -0.67 -4.18 16 25 C 0.11 1.16 12.30 86.94 1.07 2.23 16 26 C -0.25 -3.60 6.36 -20.24 -0.13 -3.72 16 27 C 0.08 1.15 9.76 22.92 0.22 1.37 16 28 C 0.06 1.82 5.62 86.38 0.49 2.30 16 29 C 0.14 5.73 6.69 86.35 0.58 6.31 16 30 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.05 3.05 6.12 -2.39 -0.01 3.03 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 2.68 6.16 -2.39 -0.01 2.66 16 35 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.10 1.64 7.97 -2.38 -0.02 1.62 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16 39 H 0.42 3.50 6.51 -92.72 -0.60 2.90 16 40 H 0.20 0.94 6.39 -2.91 -0.02 0.93 16 41 H 0.24 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.16 2.20 7.72 -2.91 -0.02 2.18 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 45 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 46 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -77.95 376.86 -3.22 -81.18 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -1.47 Total: 7.60 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 7.93 Total: 27.37 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -11.64 Total: -145.97 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.95 -3.22 -81.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713074897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.940 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds