Wall clock time and date at job start Wed Apr 1 2020 04:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48495 * 109.46752 * 239.99871 * 3 2 1 5 5 H 1.48493 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46879 * 120.00234 * 3 2 1 7 7 C 1.38814 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00283 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46882 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.49640 * 54.93287 * 12 11 10 14 14 C 1.53046 * 109.49562 * 174.99577 * 12 11 10 15 15 C 1.53039 * 109.53475 * 181.34940 * 14 12 11 16 16 C 1.53187 * 109.31507 * 298.63504 * 15 14 12 17 17 N 1.46932 * 108.77377 * 54.63699 * 16 15 14 18 18 C 1.34777 * 120.62679 * 126.37172 * 17 16 15 19 19 O 1.21577 * 119.99674 * 185.84414 * 18 17 16 20 20 C 1.47693 * 120.00615 * 5.84196 * 18 17 16 21 21 C 1.41599 * 120.02797 * 41.48010 * 20 18 17 22 22 C 1.35780 * 119.54510 * 180.02562 * 21 20 18 23 23 C 1.40857 * 119.39490 * 0.02562 * 22 21 20 24 24 N 1.32484 * 133.41941 * 179.97438 * 23 22 21 25 25 N 1.28537 * 110.24365 * 180.02562 * 24 23 22 26 26 N 1.28988 * 110.84218 * 0.02562 * 25 24 23 27 27 N 1.36934 * 119.93081 * 359.97438 * 23 22 21 28 28 C 1.35502 * 120.84272 * 0.02562 * 27 23 22 29 29 C 1.46926 * 118.73763 * 306.64422 * 17 16 15 30 30 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99802 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47217 * 59.99218 * 10 9 7 33 33 H 1.09007 * 109.46318 * 299.99245 * 10 9 7 34 34 H 1.08998 * 109.47553 * 59.99575 * 11 10 9 35 35 H 1.09000 * 109.47205 * 299.99339 * 11 10 9 36 36 H 1.08990 * 109.45627 * 61.33165 * 14 12 11 37 37 H 1.09000 * 109.44882 * 301.36074 * 14 12 11 38 38 H 1.09000 * 109.49789 * 178.68215 * 15 14 12 39 39 H 1.08998 * 109.49945 * 58.58753 * 15 14 12 40 40 H 1.09001 * 109.59118 * 294.84859 * 16 15 14 41 41 H 1.09003 * 109.70754 * 174.48991 * 16 15 14 42 42 H 1.07998 * 120.22930 * 0.02562 * 21 20 18 43 43 H 1.08000 * 120.30566 * 180.02562 * 22 21 20 44 44 H 1.07994 * 119.82590 * 179.97438 * 28 27 23 45 45 H 1.08995 * 109.58131 * 173.15035 * 29 17 16 46 46 H 1.09002 * 109.58193 * 293.56500 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8287 -6.1447 0.0026 13 1 2.5218 -6.1643 0.8437 14 6 0.8394 -7.3056 0.1288 15 6 1.6060 -8.6298 0.1633 16 6 2.3850 -8.7985 -1.1448 17 7 3.2328 -7.6155 -1.3462 18 6 4.5566 -7.7481 -1.5621 19 8 5.2647 -6.7616 -1.6214 20 6 5.1471 -9.0919 -1.7267 21 6 4.4744 -10.0721 -2.4958 22 6 5.0259 -11.3045 -2.6402 23 6 6.2591 -11.5868 -2.0210 24 7 7.0302 -12.6632 -1.9761 25 7 8.0783 -12.4304 -1.2694 26 7 8.0670 -11.2230 -0.8157 27 7 6.8897 -10.6215 -1.2824 28 6 6.3424 -9.3905 -1.1360 29 6 2.6112 -6.2849 -1.3018 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6852 -3.7149 -0.8880 34 1 0.4373 -4.7625 -0.8881 35 1 0.4368 -4.7614 0.8918 36 1 0.1624 -7.3001 -0.7252 37 1 0.2650 -7.1946 1.0485 38 1 0.9025 -9.4546 0.2768 39 1 2.3012 -8.6259 1.0028 40 1 1.6867 -8.8934 -1.9764 41 1 3.0094 -9.6901 -1.0885 42 1 3.5291 -9.8412 -2.9644 43 1 4.5236 -12.0613 -3.2244 44 1 6.8537 -8.6417 -0.5495 45 1 3.3849 -5.5186 -1.3464 46 1 1.9317 -6.1707 -2.1464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714216437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:50 Heat of formation + Delta-G solvation = 126.920852 kcal Electronic energy + Delta-G solvation = -29294.825472 eV Core-core repulsion = 25222.972190 eV Total energy + Delta-G solvation = -4071.853282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.97974 -41.09735 -39.08580 -37.95958 -35.60629 -34.76684 -33.75310 -32.62930 -32.38131 -31.19389 -30.71187 -27.79158 -26.78351 -25.24179 -24.95702 -24.20090 -23.39911 -22.73431 -21.35448 -20.69562 -19.93202 -19.37756 -18.17045 -17.56853 -17.34760 -17.00854 -16.72527 -15.93951 -15.65640 -15.22986 -14.93592 -14.80347 -14.41933 -14.18612 -13.93199 -13.75719 -13.66842 -13.47371 -13.29731 -13.16392 -13.04840 -12.85487 -12.52113 -12.43935 -12.13108 -11.62907 -11.60340 -11.28082 -11.25928 -11.13986 -10.87433 -10.78639 -10.71079 -10.53272 -10.36556 -10.31406 -9.97810 -9.66855 -9.31571 -9.02939 -8.85858 -6.91907 -5.76386 -3.04871 -0.44359 -0.20424 0.99976 1.43129 2.05189 2.36622 2.59598 3.02756 3.39559 3.44957 3.48984 3.50290 3.70486 3.75079 4.17183 4.18853 4.31703 4.51421 4.55724 4.63093 4.67052 4.77114 4.89203 4.93063 4.95664 4.98222 5.04219 5.23219 5.27478 5.40286 5.45109 5.51691 5.54697 5.61879 5.66620 5.73968 5.83874 5.90921 6.02562 6.10287 6.22461 6.35259 6.36715 6.82918 6.85327 6.88119 7.58017 7.70807 7.78647 8.42915 9.53854 10.11862 10.46255 11.46493 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.002043 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.800810 B =13704.272029 C =14741.325987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.119 4.119 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.096 3.904 17 N -0.598 5.598 18 C 0.568 3.432 19 O -0.515 6.515 20 C -0.143 4.143 21 C -0.035 4.035 22 C -0.094 4.094 23 C 0.250 3.750 24 N -0.322 5.322 25 N -0.004 5.004 26 N -0.100 5.100 27 N -0.305 5.305 28 C 0.171 3.829 29 C 0.114 3.886 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.167 0.833 43 H 0.175 0.825 44 H 0.193 0.807 45 H 0.104 0.896 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -27.296 -4.535 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.173 4.173 16 C -0.027 4.027 17 N -0.330 5.330 18 C 0.353 3.647 19 O -0.390 6.390 20 C -0.152 4.152 21 C -0.061 4.061 22 C -0.116 4.116 23 C -0.005 4.005 24 N -0.181 5.181 25 N 0.003 4.997 26 N -0.083 5.083 27 N -0.084 5.084 28 C 0.042 3.958 29 C -0.007 4.007 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.210 0.790 45 H 0.122 0.878 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.322 -27.539 -4.118 28.349 hybrid contribution -0.521 1.559 -0.074 1.646 sum 4.802 -25.980 -4.192 26.750 Atomic orbital electron populations 1.69646 1.05095 1.25733 1.57901 1.24744 0.95550 0.97713 1.03096 0.86259 0.78519 0.83482 0.77906 1.21232 1.21690 1.21271 1.19201 0.91038 0.84215 1.42556 0.91243 1.42356 1.05834 1.00084 1.89523 1.20713 0.93537 0.85618 0.97848 1.21734 0.98668 0.92762 1.02529 1.21394 0.97250 0.95346 0.97615 0.90654 1.21613 0.97732 0.93233 1.02843 1.21927 0.99515 0.98825 0.97048 1.22132 0.94151 0.87559 0.98861 1.48021 1.06430 1.08703 1.69866 1.17563 0.82308 0.86958 0.77860 1.90917 1.59806 1.38507 1.49792 1.19732 0.95446 0.97044 1.02948 1.21583 0.99697 0.90768 0.94051 1.20338 0.91087 0.98899 1.01316 1.23133 0.96743 0.86041 0.94547 1.75201 1.01249 1.20908 1.20751 1.77918 1.12370 1.06722 1.02651 1.82926 0.99011 1.03457 1.22951 1.48823 1.16228 1.11264 1.32053 1.21656 0.92496 0.84417 0.97274 1.21885 0.98058 0.82686 0.98078 0.93505 0.78351 0.96532 0.96212 0.91668 0.91401 0.91435 0.91173 0.90413 0.91378 0.90360 0.89691 0.81576 0.80763 0.79014 0.87777 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.48 5.60 -59.91 -0.34 -18.82 16 10 C 0.15 2.91 6.02 -4.04 -0.02 2.89 16 11 C -0.12 -1.68 4.80 -26.73 -0.13 -1.81 16 12 C -0.10 -1.01 2.32 -90.72 -0.21 -1.22 16 13 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.12 -0.89 5.17 -26.69 -0.14 -1.03 16 15 C -0.14 -0.73 6.08 -26.61 -0.16 -0.89 16 16 C 0.10 0.43 4.94 -3.71 -0.02 0.41 16 17 N -0.60 -4.76 2.98 -174.20 -0.52 -5.28 16 18 C 0.57 5.27 7.29 -12.40 -0.09 5.17 16 19 O -0.51 -7.03 16.33 5.30 0.09 -6.94 16 20 C -0.14 -0.92 5.03 -105.33 -0.53 -1.45 16 21 C -0.03 -0.13 7.39 -39.18 -0.29 -0.41 16 22 C -0.09 -0.39 10.09 -39.47 -0.40 -0.79 16 23 C 0.25 2.10 8.02 -156.27 -1.25 0.85 16 24 N -0.32 -3.55 12.26 31.10 0.38 -3.17 16 25 N 0.00 -0.04 13.35 60.35 0.81 0.76 16 26 N -0.10 -1.16 13.99 60.35 0.84 -0.32 16 27 N -0.31 -2.81 3.92 -12.06 -0.05 -2.85 16 28 C 0.17 1.26 10.78 -16.51 -0.18 1.08 16 29 C 0.11 1.18 5.31 -3.94 -0.02 1.16 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.39 6.70 -51.93 -0.35 0.04 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.22 8.13 -51.93 -0.42 -0.20 16 41 H 0.08 0.24 4.79 -51.93 -0.25 -0.01 16 42 H 0.17 0.15 6.75 -52.49 -0.35 -0.21 16 43 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 44 H 0.19 1.25 8.04 -52.49 -0.42 0.82 16 45 H 0.10 1.39 5.71 -51.93 -0.30 1.09 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -35.65 376.38 -7.28 -42.93 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.18 Total: 1.44 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.69 Total: -3.46 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 1.85 Total: -57.17 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.65 -7.28 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.852 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds