Wall clock time and date at job start Wed Apr 1 2020 04:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48495 * 109.46752 * 239.99871 * 3 2 1 5 5 H 1.48493 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46879 * 120.00234 * 3 2 1 7 7 C 1.38814 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00283 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46882 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.49640 * 54.93287 * 12 11 10 14 14 C 1.53046 * 109.49562 * 174.99577 * 12 11 10 15 15 C 1.53039 * 109.53475 * 181.34940 * 14 12 11 16 16 C 1.53187 * 109.31507 * 298.63504 * 15 14 12 17 17 N 1.46932 * 108.77377 * 54.63699 * 16 15 14 18 18 C 1.34777 * 120.62679 * 126.37172 * 17 16 15 19 19 O 1.21577 * 119.99674 * 185.84414 * 18 17 16 20 20 C 1.47693 * 120.00615 * 5.84196 * 18 17 16 21 21 C 1.41599 * 120.02797 * 41.48010 * 20 18 17 22 22 C 1.35780 * 119.54510 * 180.02562 * 21 20 18 23 23 C 1.40857 * 119.39490 * 0.02562 * 22 21 20 24 24 N 1.32484 * 133.41941 * 179.97438 * 23 22 21 25 25 N 1.28537 * 110.24365 * 180.02562 * 24 23 22 26 26 N 1.28988 * 110.84218 * 0.02562 * 25 24 23 27 27 N 1.36934 * 119.93081 * 359.97438 * 23 22 21 28 28 C 1.35502 * 120.84272 * 0.02562 * 27 23 22 29 29 C 1.46926 * 118.73763 * 306.64422 * 17 16 15 30 30 H 0.96999 * 120.00323 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99802 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47217 * 59.99218 * 10 9 7 33 33 H 1.09007 * 109.46318 * 299.99245 * 10 9 7 34 34 H 1.08998 * 109.47553 * 59.99575 * 11 10 9 35 35 H 1.09000 * 109.47205 * 299.99339 * 11 10 9 36 36 H 1.08990 * 109.45627 * 61.33165 * 14 12 11 37 37 H 1.09000 * 109.44882 * 301.36074 * 14 12 11 38 38 H 1.09000 * 109.49789 * 178.68215 * 15 14 12 39 39 H 1.08998 * 109.49945 * 58.58753 * 15 14 12 40 40 H 1.09001 * 109.59118 * 294.84859 * 16 15 14 41 41 H 1.09003 * 109.70754 * 174.48991 * 16 15 14 42 42 H 1.07998 * 120.22930 * 0.02562 * 21 20 18 43 43 H 1.08000 * 120.30566 * 180.02562 * 22 21 20 44 44 H 1.07994 * 119.82590 * 179.97438 * 28 27 23 45 45 H 1.08995 * 109.58131 * 173.15035 * 29 17 16 46 46 H 1.09002 * 109.58193 * 293.56500 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8287 -6.1447 0.0026 13 1 2.5218 -6.1643 0.8437 14 6 0.8394 -7.3056 0.1288 15 6 1.6060 -8.6298 0.1633 16 6 2.3850 -8.7985 -1.1448 17 7 3.2328 -7.6155 -1.3462 18 6 4.5566 -7.7481 -1.5621 19 8 5.2647 -6.7616 -1.6214 20 6 5.1471 -9.0919 -1.7267 21 6 4.4744 -10.0721 -2.4958 22 6 5.0259 -11.3045 -2.6402 23 6 6.2591 -11.5868 -2.0210 24 7 7.0302 -12.6632 -1.9761 25 7 8.0783 -12.4304 -1.2694 26 7 8.0670 -11.2230 -0.8157 27 7 6.8897 -10.6215 -1.2824 28 6 6.3424 -9.3905 -1.1360 29 6 2.6112 -6.2849 -1.3018 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6852 -3.7149 -0.8880 34 1 0.4373 -4.7625 -0.8881 35 1 0.4368 -4.7614 0.8918 36 1 0.1624 -7.3001 -0.7252 37 1 0.2650 -7.1946 1.0485 38 1 0.9025 -9.4546 0.2768 39 1 2.3012 -8.6259 1.0028 40 1 1.6867 -8.8934 -1.9764 41 1 3.0094 -9.6901 -1.0885 42 1 3.5291 -9.8412 -2.9644 43 1 4.5236 -12.0613 -3.2244 44 1 6.8537 -8.6417 -0.5495 45 1 3.3849 -5.5186 -1.3464 46 1 1.9317 -6.1707 -2.1464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714216437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:49 Heat of formation + Delta-G solvation = 102.292174 kcal Electronic energy + Delta-G solvation = -29295.893451 eV Core-core repulsion = 25222.972190 eV Total energy + Delta-G solvation = -4072.921261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.65181 -41.78910 -39.75328 -38.77940 -37.00149 -35.55204 -34.92477 -33.59202 -33.18691 -32.25165 -31.78509 -29.12328 -27.52796 -26.06962 -25.63768 -25.49328 -24.05683 -23.98830 -22.31144 -21.78046 -20.64423 -20.00579 -19.13839 -18.73072 -18.22087 -17.95921 -17.46469 -16.74393 -16.61954 -16.15899 -15.98211 -15.52539 -15.48442 -15.26247 -15.07147 -14.90185 -14.53608 -14.37049 -14.20606 -14.16876 -13.86928 -13.80499 -13.40585 -13.00719 -12.95481 -12.87840 -12.73687 -12.55531 -12.35897 -12.28304 -12.17453 -11.92835 -11.88448 -11.74193 -11.56624 -11.46268 -11.18527 -10.97892 -10.90411 -9.90967 -9.70224 -9.01100 -7.97165 -5.25819 -1.04563 -0.68658 0.37065 0.70881 1.39762 1.45662 1.48516 1.54848 1.72770 2.01008 2.46770 2.54546 2.84902 3.14623 3.28875 3.35824 3.61938 3.67043 3.76279 3.88498 3.92683 3.99478 4.08921 4.12517 4.36538 4.38419 4.43824 4.53078 4.54876 4.56238 4.65544 4.72733 4.75535 4.87894 4.90233 4.94072 4.95602 5.03302 5.09272 5.18213 5.28781 5.36114 5.42134 5.46194 5.48222 5.56539 6.21860 6.26019 6.87336 7.05479 7.32013 8.08481 8.32198 9.25851 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.002043 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.800810 B =13704.272029 C =14741.325987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.105 4.105 12 C -0.086 4.086 13 H 0.059 0.941 14 C -0.113 4.113 15 C -0.132 4.132 16 C 0.088 3.912 17 N -0.590 5.590 18 C 0.567 3.433 19 O -0.569 6.569 20 C -0.127 4.127 21 C -0.016 4.016 22 C -0.074 4.074 23 C 0.240 3.760 24 N -0.343 5.343 25 N -0.026 5.026 26 N -0.132 5.132 27 N -0.307 5.307 28 C 0.155 3.845 29 C 0.117 3.883 30 H 0.253 0.747 31 H 0.375 0.625 32 H 0.006 0.994 33 H 0.018 0.982 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.209 0.791 43 H 0.216 0.784 44 H 0.189 0.811 45 H 0.067 0.933 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 -29.328 -5.896 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.022 3.978 11 C -0.143 4.143 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.170 4.170 16 C -0.032 4.032 17 N -0.321 5.321 18 C 0.354 3.646 19 O -0.448 6.448 20 C -0.136 4.136 21 C -0.042 4.042 22 C -0.096 4.096 23 C -0.013 4.013 24 N -0.203 5.203 25 N -0.019 5.019 26 N -0.115 5.115 27 N -0.085 5.085 28 C 0.025 3.975 29 C -0.005 4.005 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.024 0.976 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.226 0.774 43 H 0.233 0.767 44 H 0.207 0.793 45 H 0.085 0.915 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.450 -29.630 -5.467 30.327 hybrid contribution -0.020 2.227 0.349 2.255 sum 3.430 -27.402 -5.118 28.087 Atomic orbital electron populations 1.69790 1.06415 1.26223 1.59253 1.25559 0.96496 1.01027 1.03571 0.85232 0.77290 0.79235 0.78147 1.20455 1.21709 1.20576 1.19568 0.91330 0.85668 1.41626 0.91278 1.42579 1.05686 1.01260 1.89409 1.20884 0.94454 0.85442 0.97001 1.21597 0.97588 0.92575 1.02552 1.21267 0.97424 0.94730 0.97209 0.92207 1.21589 0.97160 0.92898 1.03387 1.21927 0.99673 0.98234 0.97118 1.22547 0.94524 0.86485 0.99694 1.48063 1.06340 1.08990 1.68687 1.17891 0.82411 0.87272 0.77033 1.90904 1.61135 1.40483 1.52290 1.19567 0.94922 0.96182 1.02892 1.21981 1.00518 0.89274 0.92450 1.20887 0.88933 0.99849 0.99957 1.23774 0.97729 0.85193 0.94601 1.75080 1.01569 1.22366 1.21331 1.77870 1.13325 1.07213 1.03483 1.82841 1.00660 1.03623 1.24375 1.48747 1.15838 1.11741 1.32144 1.21713 0.93248 0.84078 0.98448 1.21660 0.97132 0.83363 0.98388 0.93869 0.79259 0.97556 0.96376 0.91120 0.91802 0.89982 0.91467 0.87475 0.92625 0.86920 0.87373 0.77421 0.76730 0.79350 0.91485 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.75 -38.39 5.60 -343.45 -1.92 -40.31 16 10 C 0.15 5.90 6.02 86.38 0.52 6.42 16 11 C -0.10 -2.94 4.80 30.59 0.15 -2.79 16 12 C -0.09 -1.72 2.32 -10.86 -0.03 -1.75 16 13 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 14 C -0.11 -1.36 5.17 30.62 0.16 -1.20 16 15 C -0.13 -0.86 6.08 30.67 0.19 -0.67 16 16 C 0.09 0.34 4.94 86.36 0.43 0.76 16 17 N -0.59 -7.84 2.98 -823.32 -2.45 -10.30 16 18 C 0.57 9.74 7.29 86.74 0.63 10.37 16 19 O -0.57 -15.95 16.33 -3.96 -0.06 -16.01 16 20 C -0.13 -1.33 5.03 -20.33 -0.10 -1.44 16 21 C -0.02 -0.04 7.39 22.53 0.17 0.13 16 22 C -0.07 -0.28 10.09 22.34 0.23 -0.05 16 23 C 0.24 3.60 8.02 134.16 1.08 4.67 16 24 N -0.34 -7.36 12.26 -55.52 -0.68 -8.04 16 25 N -0.03 -0.65 13.35 37.02 0.49 -0.16 16 26 N -0.13 -3.17 13.99 37.02 0.52 -2.66 16 27 N -0.31 -5.53 3.92 -192.06 -0.75 -6.28 16 28 C 0.15 2.22 10.78 83.75 0.90 3.12 16 29 C 0.12 2.29 5.31 86.22 0.46 2.74 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.38 20.11 7.67 -92.71 -0.71 19.40 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.02 0.74 6.70 -2.38 -0.02 0.72 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 -0.18 8.13 -2.39 -0.02 -0.20 16 41 H 0.11 -0.04 4.79 -2.39 -0.01 -0.05 16 42 H 0.21 -1.16 6.75 -2.91 -0.02 -1.18 16 43 H 0.22 -0.86 8.06 -2.91 -0.02 -0.89 16 44 H 0.19 2.68 8.04 -2.91 -0.02 2.66 16 45 H 0.07 1.85 5.71 -2.39 -0.01 1.83 16 46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -82.94 376.38 3.84 -79.10 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.31 Total: 11.75 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.08 Total: 2.98 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -4.52 Total: -126.54 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.06 Total: -16.01 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -82.94 3.84 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.390 kcal (2) G-P(sol) polarization free energy of solvation -82.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds