Wall clock time and date at job start Wed Apr 1 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47185 * 270.00037 * 3 2 1 5 5 H 1.48504 * 109.47266 * 29.99554 * 3 2 1 6 6 H 1.48499 * 109.47233 * 149.99653 * 3 2 1 7 7 C 1.38810 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99260 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00571 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00357 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47129 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46959 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.49750 * 304.92771 * 12 11 10 14 14 C 1.53039 * 109.49782 * 184.83630 * 12 11 10 15 15 C 1.53044 * 109.54124 * 178.68085 * 14 12 11 16 16 C 1.52770 * 109.38072 * 61.23562 * 15 14 12 17 17 N 1.46925 * 109.01100 * 305.59166 * 16 15 14 18 18 C 1.34769 * 120.63020 * 233.58598 * 17 16 15 19 19 O 1.21574 * 120.00075 * 183.59578 * 18 17 16 20 20 C 1.47698 * 119.99912 * 3.59347 * 18 17 16 21 21 C 1.41597 * 120.03165 * 309.44724 * 20 18 17 22 22 C 1.35780 * 119.54658 * 180.02562 * 21 20 18 23 23 C 1.40860 * 119.39373 * 0.02562 * 22 21 20 24 24 N 1.32486 * 133.41747 * 179.97438 * 23 22 21 25 25 N 1.28535 * 110.24285 * 180.02562 * 24 23 22 26 26 N 1.28984 * 110.84055 * 359.97438 * 25 24 23 27 27 N 1.36928 * 119.92934 * 0.02562 * 23 22 21 28 28 C 1.35495 * 120.84633 * 359.71941 * 27 23 22 29 29 C 1.46923 * 118.73883 * 53.30932 * 17 16 15 30 30 H 0.96997 * 120.00389 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99507 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.46998 * 60.00234 * 10 9 7 33 33 H 1.09000 * 109.47026 * 300.00315 * 10 9 7 34 34 H 1.08995 * 109.47576 * 59.99870 * 11 10 9 35 35 H 1.09000 * 109.46837 * 299.99712 * 11 10 9 36 36 H 1.09001 * 109.46000 * 298.69766 * 14 12 11 37 37 H 1.09001 * 109.46348 * 58.65665 * 14 12 11 38 38 H 1.08998 * 109.50137 * 181.31470 * 15 14 12 39 39 H 1.09002 * 109.49416 * 301.38474 * 15 14 12 40 40 H 1.09001 * 109.50585 * 185.70434 * 16 15 14 41 41 H 1.09001 * 109.43184 * 65.42905 * 16 15 14 42 42 H 1.07994 * 120.22668 * 0.03127 * 21 20 18 43 43 H 1.08003 * 120.30313 * 180.02562 * 22 21 20 44 44 H 1.07993 * 119.82873 * 180.30399 * 28 27 23 45 45 H 1.08999 * 109.58928 * 66.42503 * 29 17 16 46 46 H 1.08995 * 109.58748 * 186.85816 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 6 6.3814 -3.5161 -0.0006 13 1 6.0539 -4.1257 0.8416 14 6 7.8817 -3.2397 0.1210 15 6 8.6455 -4.5656 0.1535 16 6 8.3973 -5.3257 -1.1482 17 7 6.9491 -5.4679 -1.3508 18 6 6.4015 -6.6806 -1.5646 19 8 5.2119 -6.7783 -1.7958 20 6 7.2466 -7.8910 -1.5182 21 6 8.4478 -7.9458 -2.2658 22 6 9.2169 -9.0636 -2.2163 23 6 8.8056 -10.1512 -1.4213 24 7 9.3234 -11.3452 -1.1734 25 7 8.5661 -11.9997 -0.3671 26 7 7.5319 -11.3017 -0.0403 27 7 7.6390 -10.0737 -0.7085 28 6 6.8715 -8.9580 -0.7513 29 6 6.1084 -4.2637 -1.3097 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0004 32 1 3.8486 -3.0425 -0.8897 33 1 3.8492 -3.0422 0.8902 34 1 5.8798 -1.6195 0.8899 35 1 5.8797 -1.6196 -0.8900 36 1 8.2130 -2.6508 -0.7343 37 1 8.0758 -2.6862 1.0397 38 1 9.7119 -4.3686 0.2636 39 1 8.2975 -5.1653 0.9946 40 1 8.8564 -6.3124 -1.0867 41 1 8.8299 -4.7704 -1.9805 42 1 8.7502 -7.1041 -2.8712 43 1 10.1358 -9.1184 -2.7814 44 1 5.9570 -8.9127 -0.1787 45 1 6.3505 -3.6199 -2.1553 46 1 5.0577 -4.5498 -1.3547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714216438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:55 Heat of formation + Delta-G solvation = 130.888125 kcal Electronic energy + Delta-G solvation = -29380.156466 eV Core-core repulsion = 25308.475219 eV Total energy + Delta-G solvation = -4071.681248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.98288 -41.11811 -39.11856 -38.01039 -35.74131 -34.80178 -33.82021 -32.65619 -32.43068 -31.21801 -31.02138 -28.12937 -26.84331 -25.29064 -24.97557 -24.25536 -23.40761 -22.52691 -21.29520 -20.85785 -19.97244 -19.38528 -18.19568 -17.66153 -17.51375 -17.33096 -16.78210 -15.92352 -15.65718 -15.36801 -14.98153 -14.78836 -14.44512 -14.25142 -14.13544 -13.73155 -13.68409 -13.59225 -13.41227 -13.16006 -13.05008 -12.84740 -12.53013 -12.48222 -12.20910 -11.74387 -11.62727 -11.47034 -11.42542 -11.34810 -11.00060 -10.83752 -10.74559 -10.65172 -10.42681 -10.26708 -10.08818 -9.59552 -9.32282 -9.07618 -8.90026 -7.24183 -5.77123 -3.12997 -0.42955 -0.21433 0.98869 1.44629 2.02814 2.30762 2.54240 3.01996 3.35153 3.37353 3.38297 3.43394 3.68329 3.72874 4.15979 4.18411 4.27386 4.46383 4.52027 4.57767 4.65155 4.68468 4.83506 4.88604 4.92451 4.94870 5.02213 5.16543 5.26005 5.29516 5.36293 5.42751 5.47488 5.57055 5.61282 5.65573 5.71482 5.77958 5.87404 5.98730 6.08656 6.09285 6.23730 6.70234 6.72801 6.83082 7.54924 7.78553 7.99539 8.41774 9.20863 9.92954 10.12483 11.41318 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.002084 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.076823 B =13431.942573 C =14201.380596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.154 3.846 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.077 0.923 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.095 3.905 17 N -0.597 5.597 18 C 0.568 3.432 19 O -0.511 6.511 20 C -0.140 4.140 21 C -0.036 4.036 22 C -0.092 4.092 23 C 0.249 3.751 24 N -0.322 5.322 25 N -0.004 5.004 26 N -0.100 5.100 27 N -0.304 5.304 28 C 0.168 3.832 29 C 0.113 3.887 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.192 0.808 45 H 0.076 0.924 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.443 -14.606 -4.298 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.095 0.905 14 C -0.154 4.154 15 C -0.174 4.174 16 C -0.027 4.027 17 N -0.330 5.330 18 C 0.353 3.647 19 O -0.386 6.386 20 C -0.149 4.149 21 C -0.062 4.062 22 C -0.115 4.115 23 C -0.006 4.006 24 N -0.181 5.181 25 N 0.003 4.997 26 N -0.083 5.083 27 N -0.083 5.083 28 C 0.038 3.962 29 C -0.008 4.008 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.184 0.816 43 H 0.192 0.808 44 H 0.209 0.791 45 H 0.094 0.906 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.607 -16.289 -3.715 30.575 hybrid contribution 0.339 2.101 -0.195 2.137 sum 25.946 -14.188 -3.910 29.829 Atomic orbital electron populations 1.69703 1.05099 1.25800 1.57604 1.24698 0.95272 0.97246 1.02128 0.86522 0.79139 0.84956 0.77724 1.21091 1.21746 1.20405 1.19076 0.80672 0.94768 1.42890 0.89220 1.42713 1.04091 1.02257 1.91211 1.20697 0.88565 0.89334 0.98708 1.21788 0.96344 0.95597 1.02419 1.21469 0.95097 0.97297 0.97741 0.90456 1.21612 0.94515 0.96509 1.02783 1.21857 1.00989 0.97303 0.97235 1.22022 0.80302 1.01543 0.98856 1.48031 1.08502 1.06531 1.69922 1.17574 0.86786 0.82273 0.78098 1.90933 1.14691 1.85709 1.47305 1.19714 0.98004 0.95743 1.01462 1.21506 0.90897 0.98239 0.95533 1.20334 1.02963 0.88842 0.99333 1.23121 0.85699 0.96337 0.95414 1.75199 1.24264 1.01831 1.16801 1.77918 0.96715 1.20719 1.04316 1.82932 1.19240 0.87048 1.19067 1.48810 1.16731 1.13031 1.29681 1.21601 0.95818 0.81340 0.97422 1.21974 0.96746 0.84175 0.97863 0.93065 0.80744 0.95325 0.95697 0.91435 0.91685 0.91459 0.91217 0.90390 0.91385 0.89637 0.90332 0.81650 0.80768 0.79108 0.90606 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 21.90 27.73 -169.99 -4.71 17.19 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.76 -17.74 5.41 -59.91 -0.32 -18.07 16 10 C 0.15 2.81 6.02 -4.04 -0.02 2.79 16 11 C -0.12 -1.59 4.80 -26.73 -0.13 -1.72 16 12 C -0.10 -0.93 2.34 -90.50 -0.21 -1.14 16 13 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.12 -0.80 5.17 -26.69 -0.14 -0.94 16 15 C -0.14 -0.66 6.07 -26.83 -0.16 -0.82 16 16 C 0.10 0.39 5.34 -3.93 -0.02 0.37 16 17 N -0.60 -4.53 2.98 -174.19 -0.52 -5.05 16 18 C 0.57 5.11 7.22 -12.40 -0.09 5.02 16 19 O -0.51 -6.92 16.46 5.30 0.09 -6.83 16 20 C -0.14 -0.88 4.96 -105.33 -0.52 -1.40 16 21 C -0.04 -0.12 7.37 -39.18 -0.29 -0.41 16 22 C -0.09 -0.37 10.09 -39.47 -0.40 -0.77 16 23 C 0.25 2.07 8.02 -156.28 -1.25 0.82 16 24 N -0.32 -3.53 12.26 31.10 0.38 -3.15 16 25 N 0.00 -0.04 13.35 60.35 0.81 0.76 16 26 N -0.10 -1.16 13.99 60.35 0.84 -0.31 16 27 N -0.30 -2.77 3.92 -12.06 -0.05 -2.82 16 28 C 0.17 1.22 10.87 -16.51 -0.18 1.04 16 29 C 0.11 1.11 5.32 -3.71 -0.02 1.09 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.13 5.53 -40.82 -0.23 7.91 16 32 H 0.03 0.54 6.70 -51.93 -0.35 0.19 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.21 4.55 -51.93 -0.24 -0.02 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.17 0.09 7.10 -52.49 -0.37 -0.28 16 43 H 0.17 0.17 8.06 -52.48 -0.42 -0.25 16 44 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 1.34 5.74 -51.93 -0.30 1.04 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -36.74 373.87 -6.91 -43.65 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.14 Total: 0.89 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.69 Total: -3.20 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 1.92 Total: -57.34 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.09 Total: -6.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.74 -6.91 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.542 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds