Wall clock time and date at job start Wed Apr 1 2020 04:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46695 * 300.00276 * 3 2 1 6 6 H 1.48499 * 109.47005 * 60.00003 * 3 2 1 7 7 C 1.38817 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99746 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46797 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.49424 * 54.93080 * 12 11 10 14 14 C 1.53042 * 109.49897 * 174.99933 * 12 11 10 15 15 C 1.53033 * 109.53630 * 181.34627 * 14 12 11 16 16 C 1.53194 * 109.31731 * 298.63719 * 15 14 12 17 17 N 1.46931 * 108.77203 * 54.63561 * 16 15 14 18 18 C 1.34778 * 120.62847 * 126.37294 * 17 16 15 19 19 O 1.21543 * 119.99533 * 176.08206 * 18 17 16 20 20 C 1.47869 * 120.00153 * 356.08065 * 18 17 16 21 21 C 1.39448 * 121.11786 * 52.74725 * 20 18 17 22 22 C 1.38618 * 119.37647 * 179.81696 * 21 20 18 23 23 N 1.31591 * 121.63723 * 0.45361 * 22 21 20 24 24 C 1.32205 * 121.86295 * 359.78091 * 23 22 21 25 25 N 1.37212 * 134.67363 * 179.97438 * 24 23 22 26 26 H 0.96999 * 125.87061 * 359.96852 * 25 24 23 27 27 N 1.28778 * 108.26302 * 180.02562 * 25 24 23 28 28 N 1.28690 * 111.76137 * 0.02562 * 27 25 24 29 29 C 1.34398 * 109.14792 * 0.02562 * 28 27 25 30 30 C 1.46926 * 118.73631 * 306.64103 * 17 16 15 31 31 H 0.96993 * 120.00247 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99904 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46786 * 60.00413 * 10 9 7 34 34 H 1.08996 * 109.46956 * 300.00344 * 10 9 7 35 35 H 1.09004 * 109.47423 * 60.00100 * 11 10 9 36 36 H 1.09004 * 109.47718 * 300.00161 * 11 10 9 37 37 H 1.09007 * 109.45872 * 61.32969 * 14 12 11 38 38 H 1.09001 * 109.44771 * 301.36474 * 14 12 11 39 39 H 1.09004 * 109.50044 * 178.68502 * 15 14 12 40 40 H 1.09008 * 109.49629 * 58.58741 * 15 14 12 41 41 H 1.08996 * 109.58695 * 294.84744 * 16 15 14 42 42 H 1.09000 * 109.58636 * 174.42152 * 16 15 14 43 43 H 1.08004 * 120.31005 * 0.02562 * 21 20 18 44 44 H 1.08001 * 119.18040 * 180.23922 * 22 21 20 45 45 H 1.09002 * 109.58111 * 173.14670 * 30 17 16 46 46 H 1.08998 * 109.58776 * 293.57494 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8288 -6.1448 -0.0005 13 1 2.5214 -6.1646 0.8409 14 6 0.8395 -7.3057 0.1246 15 6 1.6060 -8.6298 0.1591 16 6 2.3860 -8.7981 -1.1486 17 7 3.2340 -7.6150 -1.3490 18 6 4.5579 -7.7475 -1.5639 19 8 5.2365 -6.7669 -1.7989 20 6 5.1848 -9.0858 -1.5139 21 6 4.6854 -10.1443 -2.2720 22 6 5.3035 -11.3830 -2.2005 23 7 6.3475 -11.5898 -1.4266 24 6 6.8646 -10.6285 -0.6806 25 7 7.9159 -10.5487 0.1975 26 1 8.5143 -11.2742 0.4352 27 7 7.9710 -9.3453 0.6527 28 7 7.0437 -8.6043 0.1557 29 6 6.3019 -9.3362 -0.6930 30 6 2.6122 -6.2845 -1.3045 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6848 -3.7145 -0.8905 35 1 0.4375 -4.7618 -0.8914 36 1 0.4368 -4.7622 0.8886 37 1 0.1629 -7.3000 -0.7301 38 1 0.2643 -7.1949 1.0438 39 1 0.9024 -9.4547 0.2717 40 1 2.3007 -8.6263 0.9991 41 1 1.6883 -8.8927 -1.9807 42 1 3.0105 -9.6895 -1.0895 43 1 3.8272 -9.9995 -2.9116 44 1 4.9165 -12.1996 -2.7919 45 1 3.3860 -5.5180 -1.3482 46 1 1.9333 -6.1700 -2.1495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714216981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:04 Heat of formation + Delta-G solvation = 105.709374 kcal Electronic energy + Delta-G solvation = -29676.752151 eV Core-core repulsion = 25603.979070 eV Total energy + Delta-G solvation = -4072.773080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.88758 -40.75605 -39.29795 -37.88217 -35.41645 -34.69857 -33.64190 -32.33440 -32.22129 -31.35053 -30.59083 -27.58948 -26.68762 -25.15637 -24.46712 -24.16140 -23.33591 -22.59670 -21.20611 -20.63597 -19.85195 -19.27243 -18.48486 -17.78039 -17.09572 -16.93804 -16.41260 -16.10376 -15.67851 -15.16119 -14.82933 -14.68037 -14.34971 -13.92521 -13.81309 -13.70545 -13.46845 -13.37245 -13.06542 -12.98607 -12.79024 -12.72361 -12.30902 -12.15436 -11.97602 -11.45199 -11.15930 -11.12664 -11.03345 -10.82008 -10.66022 -10.54730 -10.42879 -10.20399 -9.94138 -9.86972 -9.72920 -9.59732 -9.51988 -8.82651 -8.79047 -6.83687 -5.69481 -2.97369 -0.36756 0.33874 1.64111 1.74326 2.30796 2.58925 2.99401 3.22813 3.49511 3.55399 3.58244 3.69339 3.80721 3.97226 4.24596 4.44940 4.55897 4.66375 4.67553 4.70922 4.85094 4.93295 4.94550 5.07940 5.16805 5.20794 5.39009 5.54960 5.59139 5.61322 5.62381 5.67107 5.78583 5.87433 5.97676 6.03068 6.09201 6.19760 6.23089 6.35109 6.47003 6.48874 6.94204 6.94411 6.97263 7.09396 7.67985 7.79799 7.85088 8.50136 9.61139 10.19608 10.54314 11.53790 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002348 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.770652 B =11924.210675 C =13055.344607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.117 4.117 12 C -0.097 4.097 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.135 4.135 16 C 0.095 3.905 17 N -0.600 5.600 18 C 0.557 3.443 19 O -0.502 6.502 20 C 0.006 3.994 21 C -0.149 4.149 22 C 0.164 3.836 23 N -0.462 5.462 24 C 0.219 3.781 25 N -0.405 5.405 26 H 0.459 0.541 27 N 0.009 4.991 28 N -0.218 5.218 29 C -0.004 4.004 30 C 0.116 3.884 31 H 0.253 0.747 32 H 0.383 0.617 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.162 0.838 44 H 0.184 0.816 45 H 0.102 0.898 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -33.103 -3.876 34.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.117 4.117 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.173 4.173 16 C -0.028 4.028 17 N -0.333 5.333 18 C 0.342 3.658 19 O -0.376 6.376 20 C -0.011 4.011 21 C -0.173 4.173 22 C -0.008 4.008 23 N -0.176 5.176 24 C -0.025 4.025 25 N -0.135 5.135 26 H 0.307 0.693 27 N 0.026 4.974 28 N -0.095 5.095 29 C -0.133 4.133 30 C -0.006 4.006 31 H 0.063 0.937 32 H 0.216 0.784 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.180 0.820 44 H 0.201 0.799 45 H 0.121 0.879 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.734 -32.174 -2.984 33.472 hybrid contribution -0.343 0.440 -0.453 0.718 sum 8.391 -31.734 -3.436 33.004 Atomic orbital electron populations 1.69668 1.05096 1.25418 1.58340 1.24736 0.95542 0.97682 1.03285 0.86115 0.78917 0.84119 0.77119 1.20480 1.21902 1.21919 1.19320 0.91142 0.84207 1.41923 0.91103 1.42379 1.05835 1.00135 1.89468 1.20723 0.93554 0.85554 0.97954 1.21725 0.98626 0.92807 1.02426 1.21403 0.97249 0.95280 0.97764 0.90687 1.21598 0.97687 0.93324 1.02673 1.21928 0.99445 0.98689 0.97285 1.22070 0.94185 0.87920 0.98585 1.48055 1.06356 1.08520 1.70359 1.17906 0.82090 0.87540 0.78221 1.90897 1.61782 1.38285 1.46638 1.19579 0.92272 0.95079 0.94163 1.22417 1.01925 0.92482 1.00435 1.22851 0.88581 0.96497 0.92876 1.66328 1.12096 1.32631 1.06534 1.19837 0.93076 0.92413 0.97177 1.44728 1.24491 1.11959 1.32350 0.69301 1.78269 1.16156 0.87711 1.15267 1.75538 1.01750 1.23183 1.08992 1.20110 0.99260 0.92417 1.01523 1.21831 0.97955 0.82929 0.97838 0.93669 0.78382 0.96437 0.96120 0.91697 0.91468 0.91487 0.91294 0.90588 0.91548 0.90462 0.89713 0.82016 0.79930 0.87948 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.09 13.06 55.49 0.72 -28.37 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.73 -19.41 5.60 -59.91 -0.34 -19.75 16 10 C 0.15 3.14 6.02 -4.04 -0.02 3.12 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.10 -1.23 2.32 -90.72 -0.21 -1.44 16 13 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -1.09 5.17 -26.69 -0.14 -1.23 16 15 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 16 C 0.10 0.67 5.53 -3.71 -0.02 0.64 16 17 N -0.60 -6.65 2.98 -174.13 -0.52 -7.17 16 18 C 0.56 7.45 7.28 -12.32 -0.09 7.36 16 19 O -0.50 -9.08 16.51 5.33 0.09 -8.99 16 20 C 0.01 0.06 4.96 -104.51 -0.52 -0.46 16 21 C -0.15 -0.86 7.52 -38.99 -0.29 -1.15 16 22 C 0.16 0.77 11.14 -17.51 -0.20 0.57 16 23 N -0.46 -3.47 10.35 -12.38 -0.13 -3.60 16 24 C 0.22 2.06 8.56 -156.21 -1.34 0.72 16 25 N -0.40 -3.21 7.06 31.11 0.22 -2.99 16 26 H 0.46 1.65 8.96 -190.25 -1.71 -0.05 16 27 N 0.01 0.10 13.29 60.35 0.80 0.90 16 28 N -0.22 -3.11 12.42 32.24 0.40 -2.71 16 29 C 0.00 -0.05 7.15 -84.72 -0.61 -0.66 16 30 C 0.12 1.50 5.29 -3.93 -0.02 1.48 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.46 4.67 -51.93 -0.24 0.21 16 43 H 0.16 0.44 7.31 -52.48 -0.38 0.06 16 44 H 0.18 0.07 8.06 -52.49 -0.42 -0.36 16 45 H 0.10 1.66 5.74 -51.93 -0.30 1.36 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -38.62 376.15 -9.58 -48.21 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.49 Total: 2.39 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -3.99 Total: -1.85 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 1.16 Total: -63.68 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.62 -9.58 -48.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.916 kcal (2) G-P(sol) polarization free energy of solvation -38.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds