Wall clock time and date at job start Wed Apr 1 2020 04:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46695 * 300.00276 * 3 2 1 6 6 H 1.48499 * 109.47005 * 60.00003 * 3 2 1 7 7 C 1.38817 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99746 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46797 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47217 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.49424 * 54.93080 * 12 11 10 14 14 C 1.53042 * 109.49897 * 174.99933 * 12 11 10 15 15 C 1.53033 * 109.53630 * 181.34627 * 14 12 11 16 16 C 1.53194 * 109.31731 * 298.63719 * 15 14 12 17 17 N 1.46931 * 108.77203 * 54.63561 * 16 15 14 18 18 C 1.34778 * 120.62847 * 126.37294 * 17 16 15 19 19 O 1.21543 * 119.99533 * 176.08206 * 18 17 16 20 20 C 1.47869 * 120.00153 * 356.08065 * 18 17 16 21 21 C 1.39448 * 121.11786 * 52.74725 * 20 18 17 22 22 C 1.38618 * 119.37647 * 179.81696 * 21 20 18 23 23 N 1.31591 * 121.63723 * 0.45361 * 22 21 20 24 24 C 1.32205 * 121.86295 * 359.78091 * 23 22 21 25 25 N 1.37212 * 134.67363 * 179.97438 * 24 23 22 26 26 H 0.96999 * 125.87061 * 359.96852 * 25 24 23 27 27 N 1.28778 * 108.26302 * 180.02562 * 25 24 23 28 28 N 1.28690 * 111.76137 * 0.02562 * 27 25 24 29 29 C 1.34398 * 109.14792 * 0.02562 * 28 27 25 30 30 C 1.46926 * 118.73631 * 306.64103 * 17 16 15 31 31 H 0.96993 * 120.00247 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99904 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46786 * 60.00413 * 10 9 7 34 34 H 1.08996 * 109.46956 * 300.00344 * 10 9 7 35 35 H 1.09004 * 109.47423 * 60.00100 * 11 10 9 36 36 H 1.09004 * 109.47718 * 300.00161 * 11 10 9 37 37 H 1.09007 * 109.45872 * 61.32969 * 14 12 11 38 38 H 1.09001 * 109.44771 * 301.36474 * 14 12 11 39 39 H 1.09004 * 109.50044 * 178.68502 * 15 14 12 40 40 H 1.09008 * 109.49629 * 58.58741 * 15 14 12 41 41 H 1.08996 * 109.58695 * 294.84744 * 16 15 14 42 42 H 1.09000 * 109.58636 * 174.42152 * 16 15 14 43 43 H 1.08004 * 120.31005 * 0.02562 * 21 20 18 44 44 H 1.08001 * 119.18040 * 180.23922 * 22 21 20 45 45 H 1.09002 * 109.58111 * 173.14670 * 30 17 16 46 46 H 1.08998 * 109.58776 * 293.57494 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8288 -6.1448 -0.0005 13 1 2.5214 -6.1646 0.8409 14 6 0.8395 -7.3057 0.1246 15 6 1.6060 -8.6298 0.1591 16 6 2.3860 -8.7981 -1.1486 17 7 3.2340 -7.6150 -1.3490 18 6 4.5579 -7.7475 -1.5639 19 8 5.2365 -6.7669 -1.7989 20 6 5.1848 -9.0858 -1.5139 21 6 4.6854 -10.1443 -2.2720 22 6 5.3035 -11.3830 -2.2005 23 7 6.3475 -11.5898 -1.4266 24 6 6.8646 -10.6285 -0.6806 25 7 7.9159 -10.5487 0.1975 26 1 8.5143 -11.2742 0.4352 27 7 7.9710 -9.3453 0.6527 28 7 7.0437 -8.6043 0.1557 29 6 6.3019 -9.3362 -0.6930 30 6 2.6122 -6.2845 -1.3045 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6848 -3.7145 -0.8905 35 1 0.4375 -4.7618 -0.8914 36 1 0.4368 -4.7622 0.8886 37 1 0.1629 -7.3000 -0.7301 38 1 0.2643 -7.1949 1.0438 39 1 0.9024 -9.4547 0.2717 40 1 2.3007 -8.6263 0.9991 41 1 1.6883 -8.8927 -1.9807 42 1 3.0105 -9.6895 -1.0895 43 1 3.8272 -9.9995 -2.9116 44 1 4.9165 -12.1996 -2.7919 45 1 3.3860 -5.5180 -1.3482 46 1 1.9333 -6.1700 -2.1495 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714216981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:03 Heat of formation + Delta-G solvation = 76.011674 kcal Electronic energy + Delta-G solvation = -29678.039940 eV Core-core repulsion = 25603.979070 eV Total energy + Delta-G solvation = -4074.060869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.59454 -41.61954 -39.96852 -38.92060 -37.00372 -35.54691 -35.00644 -33.54596 -33.00690 -32.24885 -31.96860 -29.08514 -27.51354 -25.95235 -25.89230 -25.00576 -24.16323 -24.01133 -22.29153 -21.81979 -20.75254 -19.96332 -19.27103 -19.10928 -18.49531 -17.81828 -17.31694 -16.90239 -16.73454 -16.39733 -15.88499 -15.66851 -15.51421 -15.26984 -15.23137 -14.74739 -14.43533 -14.39930 -14.21359 -13.97508 -13.81323 -13.55227 -13.45181 -13.01217 -12.91080 -12.86911 -12.75971 -12.56925 -12.31491 -12.11503 -11.96998 -11.91836 -11.78990 -11.62494 -11.41025 -11.20070 -10.95511 -10.66083 -10.33272 -10.24596 -9.73082 -9.03910 -7.99396 -5.28428 -1.01851 -0.22307 0.93630 1.07885 1.41154 1.44100 1.45057 1.56022 1.78685 2.37409 2.52880 2.60956 3.04153 3.22046 3.31233 3.33531 3.62381 3.73775 3.82649 3.87320 4.03722 4.08227 4.12326 4.22745 4.30745 4.33668 4.42580 4.50431 4.53334 4.68043 4.71379 4.73144 4.85486 4.86586 4.90535 5.04673 5.12493 5.18631 5.24270 5.31796 5.37953 5.44380 5.46703 5.52071 5.62318 6.22667 6.24216 6.40305 6.92311 6.93440 7.30000 8.04640 8.30477 9.24207 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002348 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.770652 B =11924.210675 C =13055.344607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.102 4.102 12 C -0.087 4.087 13 H 0.052 0.948 14 C -0.110 4.110 15 C -0.131 4.131 16 C 0.088 3.912 17 N -0.593 5.593 18 C 0.552 3.448 19 O -0.570 6.570 20 C -0.028 4.028 21 C -0.115 4.115 22 C 0.184 3.816 23 N -0.464 5.464 24 C 0.215 3.785 25 N -0.381 5.381 26 H 0.475 0.525 27 N -0.010 5.010 28 N -0.278 5.278 29 C -0.033 4.033 30 C 0.118 3.882 31 H 0.254 0.746 32 H 0.376 0.624 33 H 0.004 0.996 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.241 0.759 45 H 0.058 0.942 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -37.074 -5.460 37.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.141 4.141 12 C -0.107 4.107 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.169 4.169 16 C -0.032 4.032 17 N -0.325 5.325 18 C 0.340 3.660 19 O -0.449 6.449 20 C -0.044 4.044 21 C -0.138 4.138 22 C 0.011 3.989 23 N -0.178 5.178 24 C -0.029 4.029 25 N -0.115 5.115 26 H 0.327 0.673 27 N 0.008 4.992 28 N -0.153 5.153 29 C -0.163 4.163 30 C -0.005 4.005 31 H 0.062 0.938 32 H 0.209 0.791 33 H 0.022 0.978 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.220 0.780 44 H 0.257 0.743 45 H 0.077 0.923 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.277 -36.208 -4.527 37.208 hybrid contribution 0.075 1.528 -0.025 1.530 sum 7.352 -34.680 -4.552 35.741 Atomic orbital electron populations 1.69803 1.06411 1.26183 1.59285 1.25563 0.96531 1.01010 1.03399 0.85076 0.77958 0.79687 0.77071 1.19700 1.21411 1.21476 1.19632 0.91260 0.85712 1.41656 0.91558 1.42563 1.05688 1.01159 1.89390 1.20853 0.94460 0.85679 0.96757 1.21583 0.97489 0.92234 1.02771 1.21277 0.97415 0.95230 0.96786 0.92929 1.21579 0.96999 0.92603 1.03599 1.21931 0.99554 0.98518 0.96896 1.22496 0.94414 0.86689 0.99603 1.48144 1.06249 1.09010 1.69062 1.18458 0.82351 0.88201 0.77021 1.90849 1.63340 1.40804 1.49864 1.19524 0.93196 0.94843 0.96883 1.22977 1.01793 0.91130 0.97878 1.23902 0.86565 0.97300 0.91113 1.66539 1.13004 1.31606 1.06663 1.19915 0.93263 0.91906 0.97787 1.44714 1.24106 1.11515 1.31163 0.67277 1.78148 1.16234 0.88803 1.16023 1.75442 1.03499 1.25143 1.11217 1.20460 1.00193 0.93489 1.02177 1.21617 0.96891 0.83460 0.98495 0.93754 0.79130 0.97836 0.96792 0.90838 0.91441 0.89644 0.91126 0.86994 0.93453 0.86927 0.87539 0.78022 0.74255 0.92315 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 3 Si 0.97 48.62 29.55 68.60 2.03 50.65 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.25 -15.16 9.99 84.03 0.84 -14.32 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -40.83 5.60 -343.46 -1.92 -42.75 16 10 C 0.15 6.61 6.02 86.38 0.52 7.13 16 11 C -0.10 -3.31 4.80 30.59 0.15 -3.16 16 12 C -0.09 -2.24 2.32 -10.86 -0.03 -2.26 16 13 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.11 -1.82 5.17 30.62 0.16 -1.66 16 15 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 16 C 0.09 0.89 5.53 86.36 0.48 1.37 16 17 N -0.59 -12.75 2.98 -823.11 -2.45 -15.20 16 18 C 0.55 15.26 7.28 86.79 0.63 15.89 16 19 O -0.57 -22.56 16.51 -3.85 -0.06 -22.63 16 20 C -0.03 -0.57 4.96 -19.79 -0.10 -0.67 16 21 C -0.11 -0.81 7.52 22.65 0.17 -0.64 16 22 C 0.18 0.71 11.14 84.82 0.94 1.66 16 23 N -0.46 -5.34 10.35 -193.09 -2.00 -7.34 16 24 C 0.21 3.81 8.56 134.17 1.15 4.96 16 25 N -0.38 -6.07 7.06 -55.48 -0.39 -6.46 16 26 H 0.47 3.17 8.96 -219.83 -1.97 1.20 16 27 N -0.01 -0.23 13.29 37.02 0.49 0.26 16 28 N -0.28 -8.59 12.42 -51.93 -0.64 -9.23 16 29 C -0.03 -0.82 7.15 40.06 0.29 -0.54 16 30 C 0.12 3.14 5.29 86.22 0.46 3.59 16 31 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.38 21.22 7.67 -92.71 -0.71 20.51 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.01 0.65 6.70 -2.39 -0.02 0.63 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.63 4.67 -2.39 -0.01 0.62 16 43 H 0.20 -0.23 7.31 -2.91 -0.02 -0.25 16 44 H 0.24 -1.78 8.06 -2.91 -0.02 -1.81 16 45 H 0.06 2.09 5.74 -2.39 -0.01 2.08 16 46 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -92.79 376.15 0.00 -92.79 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -1.63 Total: 14.50 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.31 Total: 6.09 kcal Atomic # 7 Polarization: -134.76 SS G_CDS: -6.64 Total: -141.40 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -92.79 0.00 -92.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.801 kcal (2) G-P(sol) polarization free energy of solvation -92.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds