Wall clock time and date at job start Wed Apr 1 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86811 * 119.99915 * 2 1 4 4 H 1.48506 * 109.46776 * 239.99662 * 3 2 1 5 5 H 1.48489 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46782 * 120.00096 * 3 2 1 7 7 C 1.38813 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99910 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47076 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.49368 * 305.06311 * 12 11 10 14 14 C 1.53038 * 109.49683 * 184.99923 * 12 11 10 15 15 C 1.53038 * 109.53848 * 178.68135 * 14 12 11 16 16 C 1.53191 * 109.34017 * 61.34587 * 15 14 12 17 17 N 1.46925 * 108.77364 * 305.41624 * 16 15 14 18 18 C 1.34774 * 120.60944 * 233.57342 * 17 16 15 19 19 O 1.21543 * 120.00757 * 174.42042 * 18 17 16 20 20 C 1.47879 * 119.99680 * 354.42164 * 18 17 16 21 21 C 1.39454 * 121.11589 * 313.56213 * 20 18 17 22 22 C 1.38614 * 119.37684 * 179.77173 * 21 20 18 23 23 N 1.31591 * 121.63432 * 0.52139 * 22 21 20 24 24 C 1.32200 * 121.86865 * 359.73554 * 23 22 21 25 25 N 1.37210 * 134.67952 * 179.97438 * 24 23 22 26 26 H 0.97003 * 125.86552 * 359.97438 * 25 24 23 27 27 N 1.28774 * 108.26652 * 179.97438 * 25 24 23 28 28 N 1.28690 * 111.76111 * 0.02562 * 27 25 24 29 29 C 1.34393 * 109.14912 * 359.97438 * 28 27 25 30 30 C 1.46924 * 118.76546 * 53.55345 * 17 16 15 31 31 H 0.97003 * 120.00156 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00424 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46995 * 59.99712 * 10 9 7 34 34 H 1.08999 * 109.47144 * 299.99964 * 10 9 7 35 35 H 1.09001 * 109.47291 * 60.00080 * 11 10 9 36 36 H 1.08999 * 109.47258 * 300.00081 * 11 10 9 37 37 H 1.08997 * 109.46210 * 58.66325 * 14 12 11 38 38 H 1.09000 * 109.46192 * 298.70050 * 14 12 11 39 39 H 1.09002 * 109.50029 * 181.32325 * 15 14 12 40 40 H 1.09005 * 109.49878 * 301.38236 * 15 14 12 41 41 H 1.09004 * 109.58256 * 65.17044 * 16 15 14 42 42 H 1.08999 * 109.58847 * 185.59351 * 16 15 14 43 43 H 1.07998 * 120.31034 * 359.97438 * 21 20 18 44 44 H 1.08004 * 119.18353 * 180.23127 * 22 21 20 45 45 H 1.09001 * 109.59117 * 186.62209 * 30 17 16 46 46 H 1.09003 * 109.70398 * 66.26659 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0018 13 1 2.5219 -6.1650 -0.8392 14 6 0.8397 -7.3057 -0.1232 15 6 1.6061 -8.6299 -0.1558 16 6 2.3853 -8.7973 1.1525 17 7 3.2325 -7.6138 1.3531 18 6 4.5561 -7.7461 1.5700 19 8 5.2632 -6.7596 1.6335 20 6 5.1481 -9.0917 1.7309 21 6 4.5580 -10.0440 2.5614 22 6 5.1410 -11.2958 2.6819 23 7 6.2460 -11.6073 2.0389 24 6 6.8556 -10.7472 1.2412 25 7 7.9857 -10.7859 0.4641 26 1 8.5845 -11.5431 0.3692 27 7 8.1148 -9.6443 -0.1177 28 7 7.1659 -8.8360 0.2018 29 6 6.3297 -9.4527 1.0542 30 6 2.6100 -6.2836 1.3123 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6848 -3.7145 -0.8894 35 1 0.4369 -4.7622 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 0.2653 -7.1959 -1.0431 38 1 0.1622 -7.2991 0.7306 39 1 0.9026 -9.4548 -0.2685 40 1 2.3013 -8.6274 -0.9954 41 1 1.6870 -8.8915 1.9842 42 1 3.0098 -9.6888 1.0943 43 1 3.6536 -9.8095 3.1030 44 1 4.6793 -12.0322 3.3230 45 1 3.3831 -5.5167 1.3599 46 1 1.9301 -6.1699 2.1567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714216993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:08 Heat of formation + Delta-G solvation = 105.437990 kcal Electronic energy + Delta-G solvation = -29622.201079 eV Core-core repulsion = 25549.416230 eV Total energy + Delta-G solvation = -4072.784849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.88549 -40.74425 -39.29208 -37.86179 -35.41042 -34.69031 -33.64757 -32.32427 -32.20921 -31.34081 -30.58431 -27.58462 -26.67834 -25.14711 -24.45209 -24.16723 -23.32109 -22.59314 -21.19482 -20.62813 -19.87291 -19.25773 -18.47407 -17.78156 -17.09198 -16.93549 -16.37870 -16.05104 -15.73108 -15.13363 -14.83423 -14.66809 -14.28379 -13.94780 -13.81679 -13.68848 -13.47139 -13.38478 -13.08287 -13.01000 -12.78601 -12.72121 -12.28967 -12.14808 -11.96885 -11.45738 -11.15247 -11.12007 -11.02675 -10.79087 -10.64478 -10.54191 -10.41750 -10.23610 -9.94537 -9.89418 -9.73655 -9.58904 -9.52260 -8.81701 -8.77936 -6.83627 -5.69042 -2.96994 -0.38498 0.33989 1.64382 1.74085 2.34813 2.58437 3.02144 3.23134 3.51120 3.54383 3.56484 3.69755 3.81293 3.97444 4.24117 4.44979 4.57172 4.66577 4.67877 4.71284 4.85438 4.93422 4.95116 5.07526 5.17323 5.20379 5.38514 5.55063 5.59491 5.61796 5.62586 5.67397 5.79004 5.87794 5.97858 6.03406 6.09171 6.20665 6.23490 6.35712 6.47517 6.49481 6.94176 6.94867 6.97688 7.09940 7.68437 7.78941 7.86363 8.50550 9.61397 10.19954 10.54739 11.54048 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.002304 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.892769 B =12147.438207 C =13292.520082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.097 4.097 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.135 4.135 16 C 0.098 3.902 17 N -0.601 5.601 18 C 0.556 3.444 19 O -0.500 6.500 20 C 0.003 3.997 21 C -0.146 4.146 22 C 0.163 3.837 23 N -0.462 5.462 24 C 0.217 3.783 25 N -0.405 5.405 26 H 0.459 0.541 27 N 0.008 4.992 28 N -0.217 5.217 29 C -0.003 4.003 30 C 0.115 3.885 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.162 0.838 44 H 0.184 0.816 45 H 0.102 0.898 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -32.905 5.177 33.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.173 4.173 16 C -0.025 4.025 17 N -0.334 5.334 18 C 0.341 3.659 19 O -0.373 6.373 20 C -0.014 4.014 21 C -0.170 4.170 22 C -0.009 4.009 23 N -0.175 5.175 24 C -0.026 4.026 25 N -0.135 5.135 26 H 0.307 0.693 27 N 0.025 4.975 28 N -0.093 5.093 29 C -0.132 4.132 30 C -0.006 4.006 31 H 0.064 0.936 32 H 0.216 0.784 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.180 0.820 44 H 0.201 0.799 45 H 0.121 0.879 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.440 -32.102 4.280 33.467 hybrid contribution -0.374 0.499 0.481 0.787 sum 8.065 -31.603 4.761 32.961 Atomic orbital electron populations 1.69650 1.05091 1.25643 1.58167 1.24731 0.95534 0.97660 1.03239 0.86262 0.78506 0.83515 0.77926 1.21276 1.21727 1.21246 1.19227 0.91082 0.84237 1.42221 0.91217 1.42364 1.05818 1.00114 1.89504 1.20722 0.93545 0.85546 0.97947 1.21726 0.98629 0.92863 1.02398 1.21471 0.97238 0.95206 0.97726 0.90638 1.21597 0.97682 0.93339 1.02659 1.21928 0.99447 0.98683 0.97283 1.22020 0.94133 0.87777 0.98536 1.48038 1.06426 1.08508 1.70469 1.17921 0.82173 0.87677 0.78134 1.90900 1.59667 1.38281 1.48497 1.19611 0.91714 0.94996 0.95033 1.22451 1.01886 0.93415 0.99225 1.22856 0.88698 0.95152 0.94209 1.66322 1.09770 1.34346 1.07077 1.19845 0.91751 0.92834 0.98204 1.44727 1.20290 1.14706 1.33817 0.69317 1.78271 1.17597 0.88578 1.13050 1.75547 0.99964 1.21712 1.12086 1.20131 0.98216 0.93186 1.01641 1.21917 0.97915 0.82987 0.97795 0.93568 0.78381 0.96149 0.96441 0.91489 0.91729 0.91303 0.91508 0.90583 0.91505 0.90568 0.89892 0.82024 0.79933 0.87929 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.06 13.06 55.49 0.72 -28.34 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.27 29.55 -169.99 -5.02 18.24 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.40 5.60 -59.90 -0.34 -19.73 16 10 C 0.15 3.15 6.02 -4.04 -0.02 3.12 16 11 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 12 C -0.10 -1.22 2.34 -90.50 -0.21 -1.43 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -1.08 5.17 -26.69 -0.14 -1.22 16 15 C -0.14 -1.01 6.08 -26.61 -0.16 -1.18 16 16 C 0.10 0.68 5.22 -3.71 -0.02 0.66 16 17 N -0.60 -6.59 2.97 -173.87 -0.52 -7.10 16 18 C 0.56 7.40 7.31 -12.31 -0.09 7.31 16 19 O -0.50 -9.05 16.45 5.33 0.09 -8.96 16 20 C 0.00 0.03 4.93 -104.50 -0.52 -0.48 16 21 C -0.15 -0.84 7.61 -38.99 -0.30 -1.14 16 22 C 0.16 0.76 11.14 -17.52 -0.20 0.57 16 23 N -0.46 -3.45 10.35 -12.38 -0.13 -3.58 16 24 C 0.22 2.04 8.56 -156.21 -1.34 0.70 16 25 N -0.41 -3.19 7.06 31.11 0.22 -2.97 16 26 H 0.46 1.62 8.96 -190.25 -1.71 -0.08 16 27 N 0.01 0.09 13.29 60.35 0.80 0.89 16 28 N -0.22 -3.08 12.42 32.24 0.40 -2.68 16 29 C 0.00 -0.04 7.10 -84.72 -0.60 -0.64 16 30 C 0.11 1.47 5.34 -3.71 -0.02 1.46 16 31 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 33 H 0.02 0.44 6.70 -51.93 -0.35 0.09 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.46 5.05 -51.93 -0.26 0.19 16 43 H 0.16 0.45 7.23 -52.49 -0.38 0.07 16 44 H 0.18 0.07 8.06 -52.48 -0.42 -0.35 16 45 H 0.10 1.64 5.72 -51.93 -0.30 1.35 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -38.53 376.12 -9.59 -48.12 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.50 Total: 2.37 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.99 Total: -1.92 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 1.17 Total: -63.51 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.53 -9.59 -48.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.562 kcal (2) G-P(sol) polarization free energy of solvation -38.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds