Wall clock time and date at job start Wed Apr 1 2020 04:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86811 * 119.99915 * 2 1 4 4 H 1.48506 * 109.46776 * 239.99662 * 3 2 1 5 5 H 1.48489 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46782 * 120.00096 * 3 2 1 7 7 C 1.38813 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99910 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47076 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.49368 * 305.06311 * 12 11 10 14 14 C 1.53038 * 109.49683 * 184.99923 * 12 11 10 15 15 C 1.53038 * 109.53848 * 178.68135 * 14 12 11 16 16 C 1.53191 * 109.34017 * 61.34587 * 15 14 12 17 17 N 1.46925 * 108.77364 * 305.41624 * 16 15 14 18 18 C 1.34774 * 120.60944 * 233.57342 * 17 16 15 19 19 O 1.21543 * 120.00757 * 174.42042 * 18 17 16 20 20 C 1.47879 * 119.99680 * 354.42164 * 18 17 16 21 21 C 1.39454 * 121.11589 * 313.56213 * 20 18 17 22 22 C 1.38614 * 119.37684 * 179.77173 * 21 20 18 23 23 N 1.31591 * 121.63432 * 0.52139 * 22 21 20 24 24 C 1.32200 * 121.86865 * 359.73554 * 23 22 21 25 25 N 1.37210 * 134.67952 * 179.97438 * 24 23 22 26 26 H 0.97003 * 125.86552 * 359.97438 * 25 24 23 27 27 N 1.28774 * 108.26652 * 179.97438 * 25 24 23 28 28 N 1.28690 * 111.76111 * 0.02562 * 27 25 24 29 29 C 1.34393 * 109.14912 * 359.97438 * 28 27 25 30 30 C 1.46924 * 118.76546 * 53.55345 * 17 16 15 31 31 H 0.97003 * 120.00156 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00424 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46995 * 59.99712 * 10 9 7 34 34 H 1.08999 * 109.47144 * 299.99964 * 10 9 7 35 35 H 1.09001 * 109.47291 * 60.00080 * 11 10 9 36 36 H 1.08999 * 109.47258 * 300.00081 * 11 10 9 37 37 H 1.08997 * 109.46210 * 58.66325 * 14 12 11 38 38 H 1.09000 * 109.46192 * 298.70050 * 14 12 11 39 39 H 1.09002 * 109.50029 * 181.32325 * 15 14 12 40 40 H 1.09005 * 109.49878 * 301.38236 * 15 14 12 41 41 H 1.09004 * 109.58256 * 65.17044 * 16 15 14 42 42 H 1.08999 * 109.58847 * 185.59351 * 16 15 14 43 43 H 1.07998 * 120.31034 * 359.97438 * 21 20 18 44 44 H 1.08004 * 119.18353 * 180.23127 * 22 21 20 45 45 H 1.09001 * 109.59117 * 186.62209 * 30 17 16 46 46 H 1.09003 * 109.70398 * 66.26659 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0018 13 1 2.5219 -6.1650 -0.8392 14 6 0.8397 -7.3057 -0.1232 15 6 1.6061 -8.6299 -0.1558 16 6 2.3853 -8.7973 1.1525 17 7 3.2325 -7.6138 1.3531 18 6 4.5561 -7.7461 1.5700 19 8 5.2632 -6.7596 1.6335 20 6 5.1481 -9.0917 1.7309 21 6 4.5580 -10.0440 2.5614 22 6 5.1410 -11.2958 2.6819 23 7 6.2460 -11.6073 2.0389 24 6 6.8556 -10.7472 1.2412 25 7 7.9857 -10.7859 0.4641 26 1 8.5845 -11.5431 0.3692 27 7 8.1148 -9.6443 -0.1177 28 7 7.1659 -8.8360 0.2018 29 6 6.3297 -9.4527 1.0542 30 6 2.6100 -6.2836 1.3123 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6848 -3.7145 -0.8894 35 1 0.4369 -4.7622 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 0.2653 -7.1959 -1.0431 38 1 0.1622 -7.2991 0.7306 39 1 0.9026 -9.4548 -0.2685 40 1 2.3013 -8.6274 -0.9954 41 1 1.6870 -8.8915 1.9842 42 1 3.0098 -9.6888 1.0943 43 1 3.6536 -9.8095 3.1030 44 1 4.6793 -12.0322 3.3230 45 1 3.3831 -5.5167 1.3599 46 1 1.9301 -6.1699 2.1567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714216993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:07 Heat of formation + Delta-G solvation = 75.805228 kcal Electronic energy + Delta-G solvation = -29623.486052 eV Core-core repulsion = 25549.416230 eV Total energy + Delta-G solvation = -4074.069821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58813 -41.60067 -39.95826 -38.89454 -36.99434 -35.53192 -35.00339 -33.55182 -32.97391 -32.23682 -31.95805 -29.07079 -27.49905 -25.93768 -25.88149 -24.99614 -24.14162 -24.00450 -22.28292 -21.80273 -20.76519 -19.94273 -19.25135 -19.10459 -18.49290 -17.80978 -17.28425 -16.82805 -16.72831 -16.46411 -15.81735 -15.66924 -15.50745 -15.26534 -15.19601 -14.71884 -14.45552 -14.40943 -14.20323 -13.97016 -13.82099 -13.54911 -13.43583 -12.99764 -12.87604 -12.85883 -12.73609 -12.57325 -12.30457 -12.18327 -11.95691 -11.90826 -11.76695 -11.61099 -11.38956 -11.18906 -10.93650 -10.66164 -10.33358 -10.25038 -9.71065 -9.03457 -7.98591 -5.27692 -1.03467 -0.21885 0.93663 1.08785 1.43991 1.47571 1.47725 1.54030 1.77860 2.39554 2.53424 2.61738 3.05088 3.22881 3.31738 3.33990 3.63373 3.73958 3.82851 3.88794 4.04333 4.09479 4.13229 4.23203 4.31600 4.34451 4.43434 4.51256 4.54267 4.68926 4.72080 4.74000 4.86186 4.87468 4.91832 5.05679 5.13591 5.19124 5.25194 5.32603 5.39121 5.44888 5.48074 5.53172 5.62716 6.23977 6.24625 6.40526 6.94337 6.94487 7.30490 8.05381 8.31268 9.24522 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.002304 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.892769 B =12147.438207 C =13292.520082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.087 4.087 13 H 0.051 0.949 14 C -0.110 4.110 15 C -0.131 4.131 16 C 0.091 3.909 17 N -0.594 5.594 18 C 0.550 3.450 19 O -0.569 6.569 20 C -0.031 4.031 21 C -0.111 4.111 22 C 0.183 3.817 23 N -0.463 5.463 24 C 0.213 3.787 25 N -0.381 5.381 26 H 0.475 0.525 27 N -0.010 5.010 28 N -0.276 5.276 29 C -0.032 4.032 30 C 0.117 3.883 31 H 0.254 0.746 32 H 0.376 0.624 33 H 0.015 0.985 34 H 0.003 0.997 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.202 0.798 44 H 0.241 0.759 45 H 0.059 0.941 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 -36.689 7.051 37.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.141 4.141 12 C -0.107 4.107 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.169 4.169 16 C -0.029 4.029 17 N -0.325 5.325 18 C 0.338 3.662 19 O -0.447 6.447 20 C -0.047 4.047 21 C -0.134 4.134 22 C 0.010 3.990 23 N -0.177 5.177 24 C -0.030 4.030 25 N -0.115 5.115 26 H 0.327 0.673 27 N 0.007 4.993 28 N -0.151 5.151 29 C -0.162 4.162 30 C -0.005 4.005 31 H 0.063 0.937 32 H 0.209 0.791 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.219 0.781 44 H 0.257 0.743 45 H 0.077 0.923 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.781 -35.954 6.119 37.096 hybrid contribution 0.099 1.537 -0.034 1.541 sum 6.880 -34.417 6.086 35.621 Atomic orbital electron populations 1.69791 1.06399 1.26325 1.59115 1.25561 0.96525 1.00996 1.03340 0.85221 0.77325 0.79148 0.78139 1.20607 1.21322 1.20492 1.19564 0.91266 0.85749 1.41958 0.91573 1.42549 1.05672 1.01139 1.89428 1.20852 0.94456 0.85679 0.96737 1.21583 0.97483 0.92271 1.02753 1.21350 0.97395 0.95162 0.96809 0.93030 1.21574 0.96994 0.92567 1.03607 1.21933 0.99545 0.98548 0.96910 1.22450 0.94383 0.86484 0.99623 1.48125 1.06251 1.09017 1.69145 1.18479 0.82419 0.88318 0.76987 1.90854 1.61319 1.40777 1.51786 1.19551 0.92488 0.94631 0.98010 1.22997 1.01964 0.92295 0.96163 1.23902 0.86994 0.95475 0.92635 1.66532 1.10693 1.33594 1.06908 1.19923 0.92003 0.92246 0.98849 1.44714 1.20037 1.14316 1.32434 0.67291 1.78151 1.17598 0.89521 1.14001 1.75452 1.01658 1.23602 1.14426 1.20486 0.99015 0.94436 1.02256 1.21716 0.96880 0.83470 0.98453 0.93740 0.79131 0.96753 0.97937 0.91535 0.90776 0.91209 0.89532 0.87014 0.93542 0.86719 0.87919 0.78108 0.74282 0.92287 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 48.49 29.55 68.60 2.03 50.52 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.25 -15.31 9.99 84.03 0.84 -14.47 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -40.75 5.60 -343.44 -1.92 -42.67 16 10 C 0.15 6.60 6.02 86.38 0.52 7.12 16 11 C -0.10 -3.29 4.80 30.59 0.15 -3.15 16 12 C -0.09 -2.22 2.34 -10.72 -0.03 -2.25 16 13 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 14 C -0.11 -1.79 5.17 30.62 0.16 -1.63 16 15 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 16 C 0.09 0.90 5.22 86.36 0.45 1.35 16 17 N -0.59 -12.53 2.97 -822.29 -2.44 -14.98 16 18 C 0.55 15.16 7.31 86.80 0.63 15.80 16 19 O -0.57 -22.62 16.45 -3.85 -0.06 -22.68 16 20 C -0.03 -0.61 4.93 -19.79 -0.10 -0.71 16 21 C -0.11 -0.78 7.61 22.65 0.17 -0.61 16 22 C 0.18 0.71 11.14 84.82 0.94 1.65 16 23 N -0.46 -5.31 10.35 -193.09 -2.00 -7.31 16 24 C 0.21 3.77 8.56 134.18 1.15 4.92 16 25 N -0.38 -6.02 7.06 -55.48 -0.39 -6.42 16 26 H 0.47 3.12 8.96 -219.83 -1.97 1.15 16 27 N -0.01 -0.25 13.29 37.02 0.49 0.24 16 28 N -0.28 -8.52 12.42 -51.93 -0.64 -9.17 16 29 C -0.03 -0.79 7.10 40.06 0.28 -0.50 16 30 C 0.12 3.06 5.34 86.36 0.46 3.52 16 31 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.38 21.17 7.67 -92.71 -0.71 20.46 16 33 H 0.01 0.66 6.70 -2.39 -0.02 0.65 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.10 0.64 5.05 -2.39 -0.01 0.63 16 43 H 0.20 -0.20 7.23 -2.91 -0.02 -0.23 16 44 H 0.24 -1.77 8.06 -2.91 -0.02 -1.80 16 45 H 0.06 2.07 5.72 -2.39 -0.01 2.06 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -92.73 376.12 -0.01 -92.74 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -1.63 Total: 14.42 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.29 Total: 5.83 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -6.63 Total: -140.83 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -92.73 -0.01 -92.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714216993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.548 kcal (2) G-P(sol) polarization free energy of solvation -92.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds