Wall clock time and date at job start Wed Apr 1 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00329 * 2 1 4 4 H 1.48504 * 109.46903 * 269.99904 * 3 2 1 5 5 H 1.48500 * 109.47162 * 29.99693 * 3 2 1 6 6 H 1.48502 * 109.47489 * 150.00036 * 3 2 1 7 7 C 1.38818 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99830 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47688 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.46553 * 174.99710 * 12 11 10 14 14 C 1.53189 * 109.31589 * 181.38348 * 13 12 11 15 15 N 1.46924 * 108.77628 * 305.37306 * 14 13 12 16 16 C 1.34779 * 120.62644 * 233.58147 * 15 14 13 17 17 O 1.21565 * 120.00224 * 5.83242 * 16 15 14 18 18 C 1.47824 * 119.99863 * 185.82569 * 16 15 14 19 19 C 1.41585 * 120.37523 * 41.21950 * 18 16 15 20 20 C 1.34814 * 120.11604 * 180.31127 * 19 18 16 21 21 N 1.36058 * 120.82491 * 359.41618 * 20 19 18 22 22 N 1.40256 * 133.73230 * 180.27804 * 21 20 19 23 23 N 1.28966 * 107.02281 * 180.02562 * 22 21 20 24 24 N 1.28542 * 110.84484 * 359.97438 * 23 22 21 25 25 C 1.32624 * 110.18532 * 0.02562 * 24 23 22 26 26 C 1.38462 * 120.37565 * 220.93321 * 18 16 15 27 27 C 1.46919 * 118.74517 * 53.85772 * 15 14 13 28 28 C 1.53040 * 109.46062 * 295.07141 * 12 11 10 29 29 H 0.97002 * 119.99816 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99570 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47415 * 60.00030 * 10 9 7 32 32 H 1.09001 * 109.47018 * 299.99419 * 10 9 7 33 33 H 1.09005 * 109.47206 * 59.99856 * 11 10 9 34 34 H 1.09000 * 109.47036 * 300.00322 * 11 10 9 35 35 H 1.09003 * 109.45900 * 55.02545 * 12 11 10 36 36 H 1.09000 * 109.49355 * 61.43583 * 13 12 11 37 37 H 1.08999 * 109.52387 * 301.35847 * 13 12 11 38 38 H 1.08999 * 109.59008 * 185.57878 * 14 13 12 39 39 H 1.09006 * 109.70236 * 65.22068 * 14 13 12 40 40 H 1.07997 * 119.93825 * 0.02562 * 19 18 16 41 41 H 1.07996 * 119.58738 * 179.69186 * 20 19 18 42 42 H 1.07999 * 120.51881 * 359.96359 * 26 18 16 43 43 H 1.08999 * 109.59093 * 65.92232 * 27 15 14 44 44 H 1.08999 * 109.59135 * 186.35891 * 27 15 14 45 45 H 1.09008 * 109.49343 * 298.56166 * 28 12 11 46 46 H 1.08996 * 109.49876 * 58.65653 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 0.0000 12 6 6.3812 -3.5165 0.0006 13 6 7.8811 -3.2395 -0.1252 14 6 8.6409 -4.5693 -0.1590 15 7 8.2697 -5.3562 1.0249 16 6 9.2173 -5.8414 1.8516 17 8 10.3832 -5.5418 1.6820 18 6 8.8387 -6.7377 2.9644 19 6 7.8674 -7.7494 2.7702 20 6 7.5216 -8.5599 3.7905 21 7 8.1040 -8.4290 5.0131 22 7 7.9609 -9.1065 6.2328 23 7 8.7729 -8.5544 7.0689 24 7 9.4210 -7.5946 6.5113 25 6 9.0517 -7.4688 5.2437 26 6 9.4343 -6.6012 4.2070 27 6 6.8465 -5.6094 1.2873 28 6 6.1065 -4.2633 1.3080 29 1 -0.4850 0.8401 0.0004 30 1 3.8645 -0.3623 0.0004 31 1 3.8490 -3.0425 -0.8902 32 1 3.8483 -3.0427 0.8898 33 1 5.8796 -1.6200 0.8900 34 1 5.8796 -1.6200 -0.8900 35 1 6.0527 -4.1260 -0.8413 36 1 8.2152 -2.6512 0.7294 37 1 8.0736 -2.6870 -1.0448 38 1 9.7138 -4.3775 -0.1487 39 1 8.3768 -5.1206 -1.0615 40 1 7.3995 -7.8690 1.8043 41 1 6.7761 -9.3255 3.6342 42 1 10.1813 -5.8399 4.3764 43 1 6.4368 -6.2426 0.5003 44 1 6.7351 -6.1040 2.2522 45 1 6.4575 -3.6653 2.1491 46 1 5.0356 -4.4396 1.4081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714276544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:37 Heat of formation + Delta-G solvation = 131.183293 kcal Electronic energy + Delta-G solvation = -29208.002305 eV Core-core repulsion = 25136.333857 eV Total energy + Delta-G solvation = -4071.668448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.93395 -41.12191 -39.07333 -38.18771 -35.70579 -34.66027 -33.89621 -32.86230 -31.52295 -31.27320 -31.14160 -29.03555 -26.52455 -25.50711 -24.87504 -23.73132 -23.40888 -22.83598 -21.47649 -20.75536 -20.00084 -19.17535 -18.61409 -17.57390 -17.43884 -17.13230 -16.74315 -15.95259 -15.70557 -15.41188 -14.95855 -14.77493 -14.48968 -14.25116 -14.09196 -13.94013 -13.79103 -13.50847 -13.38822 -13.11997 -13.03826 -12.73070 -12.66716 -12.47216 -12.13029 -11.70930 -11.64121 -11.58009 -11.48235 -11.27994 -10.94275 -10.85780 -10.78768 -10.59485 -10.36232 -10.31381 -10.09945 -9.64399 -9.30891 -9.14514 -8.93657 -7.28071 -5.81988 -3.17627 -0.51294 -0.22201 1.10346 1.51623 1.88876 2.17924 2.55059 3.06979 3.33175 3.35884 3.36292 3.41489 3.59214 3.79510 4.18248 4.20680 4.35975 4.50862 4.54503 4.55825 4.58396 4.70551 4.81056 4.88033 4.95191 4.97080 5.02875 5.12110 5.22985 5.33054 5.38289 5.42607 5.49395 5.50441 5.59887 5.66523 5.78481 5.82223 5.89694 5.99193 6.08198 6.13015 6.23770 6.65901 6.70771 6.74565 7.44326 7.80695 7.93963 8.37229 9.16409 9.89011 10.08501 11.36406 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002163 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.138226 B =12939.500866 C =14075.860046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.758 5.758 10 C 0.157 3.843 11 C -0.126 4.126 12 C -0.082 4.082 13 C -0.130 4.130 14 C 0.112 3.888 15 N -0.597 5.597 16 C 0.562 3.438 17 O -0.521 6.521 18 C -0.063 4.063 19 C -0.118 4.118 20 C 0.111 3.889 21 N -0.296 5.296 22 N -0.104 5.104 23 N -0.006 5.006 24 N -0.312 5.312 25 C 0.240 3.760 26 C -0.031 4.031 27 C 0.094 3.906 28 C -0.134 4.134 29 H 0.260 0.740 30 H 0.360 0.640 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.177 0.823 41 H 0.190 0.810 42 H 0.177 0.823 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.035 -18.027 1.937 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.030 3.970 11 C -0.164 4.164 12 C -0.102 4.102 13 C -0.168 4.168 14 C -0.009 4.009 15 N -0.330 5.330 16 C 0.349 3.651 17 O -0.397 6.397 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.016 4.016 21 N -0.077 5.077 22 N -0.087 5.087 23 N 0.001 4.999 24 N -0.172 5.172 25 C -0.015 4.015 26 C -0.055 4.055 27 C -0.029 4.029 28 C -0.172 4.172 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.195 0.805 41 H 0.207 0.793 42 H 0.194 0.806 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.389 -18.621 3.375 27.818 hybrid contribution 0.154 1.470 -0.873 1.716 sum 20.543 -17.152 2.502 26.879 Atomic orbital electron populations 1.69702 1.05116 1.25881 1.57491 1.24696 0.95271 0.97295 1.02006 0.86527 0.79179 0.84897 0.77783 1.21054 1.21699 1.20367 1.19055 0.80687 0.94696 1.43129 0.89283 1.42739 1.04084 1.02373 1.91176 1.20673 0.88701 0.89270 0.98372 1.21819 0.96309 0.96155 1.02104 1.21084 0.94183 0.97259 0.97633 1.22000 0.95232 0.96383 1.03232 1.21753 1.01393 0.91747 0.86048 1.48051 1.06649 1.52306 1.25953 1.17833 0.85572 0.80264 0.81460 1.90863 1.18028 1.58754 1.72087 1.20281 0.96064 0.96786 0.94340 1.21333 0.97890 0.94651 1.00270 1.21623 0.98704 1.01260 0.80039 1.49067 1.25735 1.21990 1.10884 1.82853 1.22674 1.18287 0.84925 1.77919 0.99871 1.00889 1.21204 1.75284 1.23870 1.15629 1.02455 1.22727 0.91262 0.92575 0.94903 1.20690 0.99352 0.97648 0.87761 1.22334 0.79468 0.98874 1.02182 1.22160 1.01402 0.94945 0.98692 0.93025 0.80717 0.95750 0.95585 0.92041 0.91808 0.90590 0.91309 0.90222 0.88721 0.90736 0.80546 0.79265 0.80561 0.90144 0.89408 0.91228 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 21.75 27.74 -169.99 -4.71 17.03 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.82 10.47 -15.05 -0.16 -6.97 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.76 -17.38 5.41 -59.91 -0.32 -17.70 16 10 C 0.16 2.71 6.02 -4.04 -0.02 2.68 16 11 C -0.13 -1.61 4.80 -26.73 -0.13 -1.73 16 12 C -0.08 -0.73 2.15 -90.58 -0.19 -0.92 16 13 C -0.13 -1.00 5.36 -26.61 -0.14 -1.14 16 14 C 0.11 0.76 6.44 -3.71 -0.02 0.73 16 15 N -0.60 -3.93 2.97 -173.63 -0.51 -4.45 16 16 C 0.56 4.46 7.33 -12.34 -0.09 4.37 16 17 O -0.52 -5.94 16.36 5.31 0.09 -5.86 16 18 C -0.06 -0.38 5.10 -104.62 -0.53 -0.91 16 19 C -0.12 -0.38 7.35 -39.52 -0.29 -0.67 16 20 C 0.11 0.44 11.19 -16.89 -0.19 0.25 16 21 N -0.30 -2.46 3.94 -12.43 -0.05 -2.51 16 22 N -0.10 -1.14 13.98 60.35 0.84 -0.30 16 23 N -0.01 -0.07 13.35 60.35 0.81 0.73 16 24 N -0.31 -3.73 12.27 31.03 0.38 -3.35 16 25 C 0.24 2.24 8.02 -156.36 -1.25 0.99 16 26 C -0.03 -0.22 9.76 -38.65 -0.38 -0.60 16 27 C 0.09 0.47 4.96 -3.49 -0.02 0.45 16 28 C -0.13 -1.05 5.16 -26.38 -0.14 -1.18 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 30 H 0.36 8.09 5.53 -40.82 -0.23 7.86 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.45 6.53 -51.93 -0.34 0.11 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.74 7.00 -51.93 -0.36 0.38 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.18 0.06 6.72 -52.49 -0.35 -0.29 16 41 H 0.19 0.11 8.06 -52.49 -0.42 -0.31 16 42 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 43 H 0.08 0.26 8.13 -51.93 -0.42 -0.16 16 44 H 0.09 0.32 4.77 -51.93 -0.25 0.08 16 45 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.09 0.76 6.50 -51.93 -0.34 0.43 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -36.30 373.12 -6.85 -43.15 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.11 Total: 0.49 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.66 Total: -4.66 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 1.92 Total: -55.78 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.09 Total: -5.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.30 -6.85 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714276544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.333 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds