Wall clock time and date at job start Wed Apr 1 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00329 * 2 1 4 4 H 1.48504 * 109.46903 * 269.99904 * 3 2 1 5 5 H 1.48500 * 109.47162 * 29.99693 * 3 2 1 6 6 H 1.48502 * 109.47489 * 150.00036 * 3 2 1 7 7 C 1.38818 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99830 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47688 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.46553 * 174.99710 * 12 11 10 14 14 C 1.53189 * 109.31589 * 181.38348 * 13 12 11 15 15 N 1.46924 * 108.77628 * 305.37306 * 14 13 12 16 16 C 1.34779 * 120.62644 * 233.58147 * 15 14 13 17 17 O 1.21565 * 120.00224 * 5.83242 * 16 15 14 18 18 C 1.47824 * 119.99863 * 185.82569 * 16 15 14 19 19 C 1.41585 * 120.37523 * 41.21950 * 18 16 15 20 20 C 1.34814 * 120.11604 * 180.31127 * 19 18 16 21 21 N 1.36058 * 120.82491 * 359.41618 * 20 19 18 22 22 N 1.40256 * 133.73230 * 180.27804 * 21 20 19 23 23 N 1.28966 * 107.02281 * 180.02562 * 22 21 20 24 24 N 1.28542 * 110.84484 * 359.97438 * 23 22 21 25 25 C 1.32624 * 110.18532 * 0.02562 * 24 23 22 26 26 C 1.38462 * 120.37565 * 220.93321 * 18 16 15 27 27 C 1.46919 * 118.74517 * 53.85772 * 15 14 13 28 28 C 1.53040 * 109.46062 * 295.07141 * 12 11 10 29 29 H 0.97002 * 119.99816 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99570 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47415 * 60.00030 * 10 9 7 32 32 H 1.09001 * 109.47018 * 299.99419 * 10 9 7 33 33 H 1.09005 * 109.47206 * 59.99856 * 11 10 9 34 34 H 1.09000 * 109.47036 * 300.00322 * 11 10 9 35 35 H 1.09003 * 109.45900 * 55.02545 * 12 11 10 36 36 H 1.09000 * 109.49355 * 61.43583 * 13 12 11 37 37 H 1.08999 * 109.52387 * 301.35847 * 13 12 11 38 38 H 1.08999 * 109.59008 * 185.57878 * 14 13 12 39 39 H 1.09006 * 109.70236 * 65.22068 * 14 13 12 40 40 H 1.07997 * 119.93825 * 0.02562 * 19 18 16 41 41 H 1.07996 * 119.58738 * 179.69186 * 20 19 18 42 42 H 1.07999 * 120.51881 * 359.96359 * 26 18 16 43 43 H 1.08999 * 109.59093 * 65.92232 * 27 15 14 44 44 H 1.08999 * 109.59135 * 186.35891 * 27 15 14 45 45 H 1.09008 * 109.49343 * 298.56166 * 28 12 11 46 46 H 1.08996 * 109.49876 * 58.65653 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 0.0000 12 6 6.3812 -3.5165 0.0006 13 6 7.8811 -3.2395 -0.1252 14 6 8.6409 -4.5693 -0.1590 15 7 8.2697 -5.3562 1.0249 16 6 9.2173 -5.8414 1.8516 17 8 10.3832 -5.5418 1.6820 18 6 8.8387 -6.7377 2.9644 19 6 7.8674 -7.7494 2.7702 20 6 7.5216 -8.5599 3.7905 21 7 8.1040 -8.4290 5.0131 22 7 7.9609 -9.1065 6.2328 23 7 8.7729 -8.5544 7.0689 24 7 9.4210 -7.5946 6.5113 25 6 9.0517 -7.4688 5.2437 26 6 9.4343 -6.6012 4.2070 27 6 6.8465 -5.6094 1.2873 28 6 6.1065 -4.2633 1.3080 29 1 -0.4850 0.8401 0.0004 30 1 3.8645 -0.3623 0.0004 31 1 3.8490 -3.0425 -0.8902 32 1 3.8483 -3.0427 0.8898 33 1 5.8796 -1.6200 0.8900 34 1 5.8796 -1.6200 -0.8900 35 1 6.0527 -4.1260 -0.8413 36 1 8.2152 -2.6512 0.7294 37 1 8.0736 -2.6870 -1.0448 38 1 9.7138 -4.3775 -0.1487 39 1 8.3768 -5.1206 -1.0615 40 1 7.3995 -7.8690 1.8043 41 1 6.7761 -9.3255 3.6342 42 1 10.1813 -5.8399 4.3764 43 1 6.4368 -6.2426 0.5003 44 1 6.7351 -6.1040 2.2522 45 1 6.4575 -3.6653 2.1491 46 1 5.0356 -4.4396 1.4081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714276544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:36 Heat of formation + Delta-G solvation = 105.881180 kcal Electronic energy + Delta-G solvation = -29209.099487 eV Core-core repulsion = 25136.333857 eV Total energy + Delta-G solvation = -4072.765630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.59744 -41.71629 -39.67423 -38.91856 -37.04450 -35.36773 -35.03848 -33.68620 -33.11083 -31.92259 -31.72285 -30.24941 -27.37141 -26.17233 -25.87199 -24.33958 -24.22308 -23.96036 -22.68420 -21.67703 -20.63462 -19.75749 -19.58216 -19.14512 -18.10756 -17.65362 -17.36880 -16.62703 -16.48054 -16.30203 -15.88670 -15.82687 -15.81306 -15.05650 -14.99659 -14.75555 -14.64668 -14.38814 -14.33284 -14.12343 -13.92385 -13.74913 -13.36543 -13.24639 -13.11512 -12.92594 -12.77260 -12.53437 -12.31129 -12.27544 -12.15419 -12.08894 -11.83855 -11.71709 -11.44268 -11.42499 -11.16533 -10.95398 -10.87955 -9.87269 -9.70751 -9.26472 -8.02750 -5.35439 -1.04769 -0.77263 0.57054 0.87455 1.26506 1.37761 1.40920 1.48452 1.62122 2.01979 2.48483 2.49261 2.80795 3.11252 3.29166 3.36899 3.57853 3.66005 3.78799 3.84126 3.94446 4.01371 4.06598 4.13807 4.27248 4.36747 4.41738 4.47248 4.52615 4.59867 4.62274 4.65914 4.78467 4.80058 4.87251 4.95520 4.98982 5.09067 5.13607 5.20604 5.25949 5.31884 5.38863 5.55098 5.61426 5.77247 6.19549 6.22214 6.85945 7.07704 7.09376 7.87754 8.04201 9.18736 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.002163 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.138226 B =12939.500866 C =14075.860046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.252 1.252 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.765 5.765 10 C 0.152 3.848 11 C -0.116 4.116 12 C -0.075 4.075 13 C -0.124 4.124 14 C 0.113 3.887 15 N -0.591 5.591 16 C 0.563 3.437 17 O -0.561 6.561 18 C -0.051 4.051 19 C -0.098 4.098 20 C 0.113 3.887 21 N -0.295 5.295 22 N -0.122 5.122 23 N -0.032 5.032 24 N -0.346 5.346 25 C 0.229 3.771 26 C -0.044 4.044 27 C 0.094 3.906 28 C -0.136 4.136 29 H 0.257 0.743 30 H 0.364 0.636 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.219 0.781 41 H 0.232 0.768 42 H 0.175 0.825 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.878 -18.980 -0.017 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.177 1.177 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.410 5.410 10 C 0.026 3.974 11 C -0.154 4.154 12 C -0.094 4.094 13 C -0.162 4.162 14 C -0.008 4.008 15 N -0.322 5.322 16 C 0.351 3.649 17 O -0.440 6.440 18 C -0.063 4.063 19 C -0.121 4.121 20 C -0.013 4.013 21 N -0.075 5.075 22 N -0.105 5.105 23 N -0.025 5.025 24 N -0.208 5.208 25 C -0.023 4.023 26 C -0.068 4.068 27 C -0.027 4.027 28 C -0.174 4.174 29 H 0.066 0.934 30 H 0.197 0.803 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.236 0.764 41 H 0.248 0.752 42 H 0.192 0.808 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.073 0.927 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.263 -19.607 1.415 28.958 hybrid contribution -0.180 1.722 -0.435 1.785 sum 21.083 -17.886 0.980 27.665 Atomic orbital electron populations 1.69884 1.07130 1.26647 1.59867 1.25545 0.96159 1.01367 1.02867 0.85398 0.78589 0.79608 0.78117 1.20339 1.22476 1.17702 1.19075 0.82902 0.93453 1.40978 0.92332 1.42848 1.02528 1.04685 1.90969 1.20920 0.91119 0.86983 0.98351 1.21724 0.93365 0.98476 1.01807 1.21034 0.94267 0.95309 0.98812 1.21920 0.94313 0.96954 1.03036 1.21768 1.00579 0.91526 0.86927 1.48120 1.07141 1.51519 1.25422 1.17996 0.85165 0.80200 0.81570 1.90858 1.19777 1.60259 1.73101 1.20289 0.96099 0.96886 0.93006 1.21797 0.96170 0.92581 1.01558 1.22522 0.98610 1.01877 0.78261 1.49209 1.25549 1.21254 1.11446 1.82707 1.22994 1.18987 0.85850 1.77862 1.00751 1.01623 1.22268 1.75145 1.25135 1.16390 1.04127 1.22776 0.91789 0.93259 0.94515 1.20689 1.00182 0.97900 0.88045 1.22520 0.77941 0.97734 1.04470 1.22132 1.01419 0.96315 0.97521 0.93399 0.80320 0.95579 0.95233 0.92768 0.91719 0.89109 0.92783 0.89465 0.89926 0.88326 0.76399 0.75212 0.80783 0.86758 0.87758 0.92710 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.30 13.97 21.65 0.30 -62.00 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 44.61 27.74 68.60 1.90 46.52 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 7 C -0.23 -12.94 10.47 84.03 0.88 -12.06 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -33.98 5.41 -343.45 -1.86 -35.83 16 10 C 0.15 4.95 6.02 86.38 0.52 5.47 16 11 C -0.12 -2.66 4.80 30.59 0.15 -2.52 16 12 C -0.08 -1.07 2.15 -10.77 -0.02 -1.10 16 13 C -0.12 -1.54 5.36 30.67 0.16 -1.37 16 14 C 0.11 1.16 6.44 86.36 0.56 1.71 16 15 N -0.59 -5.61 2.97 -821.50 -2.44 -8.05 16 16 C 0.56 7.51 7.33 86.78 0.64 8.14 16 17 O -0.56 -12.14 16.36 -3.92 -0.06 -12.20 16 18 C -0.05 -0.48 5.10 -19.86 -0.10 -0.58 16 19 C -0.10 -0.18 7.35 22.31 0.16 -0.02 16 20 C 0.11 0.47 11.19 83.25 0.93 1.40 16 21 N -0.29 -4.47 3.94 -193.24 -0.76 -5.23 16 22 N -0.12 -2.66 13.98 37.02 0.52 -2.14 16 23 N -0.03 -0.84 13.35 37.02 0.49 -0.35 16 24 N -0.35 -8.68 12.27 -55.73 -0.68 -9.36 16 25 C 0.23 4.26 8.02 134.05 1.07 5.33 16 26 C -0.04 -0.61 9.76 22.87 0.22 -0.39 16 27 C 0.09 0.49 4.96 86.51 0.43 0.92 16 28 C -0.14 -1.68 5.16 30.82 0.16 -1.52 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.36 15.53 5.53 -92.71 -0.51 15.01 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 0.96 6.53 -2.39 -0.02 0.95 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.12 7.00 -2.39 -0.02 1.10 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.22 -1.36 6.72 -2.91 -0.02 -1.38 16 41 H 0.23 -0.98 8.06 -2.91 -0.02 -1.00 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 43 H 0.11 -0.03 8.13 -2.39 -0.02 -0.05 16 44 H 0.10 0.23 4.77 -2.39 -0.01 0.22 16 45 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.08 1.17 6.50 -2.39 -0.02 1.15 16 Total: -1.00 -83.58 373.12 4.10 -79.49 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.45 Total: 9.23 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.23 Total: -0.06 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -4.42 Total: -122.96 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.06 Total: -12.20 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.52 kcal Total: -83.58 4.10 -79.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714276544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.367 kcal (2) G-P(sol) polarization free energy of solvation -83.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds