Wall clock time and date at job start Wed Apr 1 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48491 * 109.47137 * 239.99680 * 3 2 1 5 5 H 1.48501 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47178 * 119.99377 * 3 2 1 7 7 C 1.38808 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00514 * 163.08055 * 7 2 1 9 9 N 1.36939 * 119.99708 * 343.08787 * 7 2 1 10 10 C 1.46924 * 120.63317 * 331.83907 * 9 7 2 11 11 C 1.53196 * 108.77856 * 233.58999 * 10 9 7 12 12 C 1.53043 * 109.31025 * 305.36607 * 11 10 9 13 13 C 1.53005 * 109.45678 * 181.38458 * 12 11 10 14 14 C 1.53001 * 109.46657 * 174.97067 * 13 12 11 15 15 N 1.46500 * 109.46660 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99950 * 180.02562 * 15 14 13 17 17 O 1.21621 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.47323 * 120.00269 * 180.02562 * 16 15 14 19 19 C 1.39002 * 120.90369 * 359.97438 * 18 16 15 20 20 C 1.39711 * 119.29131 * 180.23694 * 19 18 16 21 21 C 1.35256 * 121.08075 * 359.50514 * 20 19 18 22 22 N 1.35710 * 121.57160 * 0.47282 * 21 20 19 23 23 N 1.40208 * 134.09008 * 179.75562 * 22 21 20 24 24 N 1.29022 * 106.96102 * 180.02562 * 23 22 21 25 25 N 1.28587 * 110.78851 * 0.02562 * 24 23 22 26 26 C 1.32051 * 110.21351 * 359.97438 * 25 24 23 27 27 C 1.53036 * 109.52843 * 61.37198 * 12 11 10 28 28 C 1.46932 * 120.62884 * 151.82196 * 9 7 2 29 29 H 0.96998 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58550 * 113.80500 * 10 9 7 31 31 H 1.09004 * 109.70106 * 353.44717 * 10 9 7 32 32 H 1.08996 * 109.49686 * 185.41291 * 11 10 9 33 33 H 1.08995 * 109.49447 * 65.31420 * 11 10 9 34 34 H 1.08996 * 109.45811 * 301.35220 * 12 11 10 35 35 H 1.09000 * 109.47148 * 54.97426 * 13 12 11 36 36 H 1.08995 * 109.46977 * 294.97081 * 13 12 11 37 37 H 1.09000 * 109.47048 * 60.00298 * 14 13 12 38 38 H 1.08995 * 109.47440 * 299.99731 * 14 13 12 39 39 H 0.96997 * 120.00261 * 0.02562 * 15 14 13 40 40 H 1.08002 * 120.35119 * 359.95215 * 19 18 16 41 41 H 1.08007 * 119.45756 * 179.72854 * 20 19 18 42 42 H 1.07997 * 119.21381 * 180.27168 * 21 20 19 43 43 H 1.09000 * 109.50141 * 58.57729 * 27 12 11 44 44 H 1.09002 * 109.49802 * 178.67362 * 27 12 11 45 45 H 1.08999 * 109.58276 * 246.19531 * 28 9 7 46 46 H 1.08996 * 109.58632 * 6.48333 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3622 0.3461 10 6 0.2258 -2.3400 1.2676 11 6 0.4970 -3.3192 2.4141 12 6 0.8116 -4.7008 1.8359 13 6 1.0491 -5.6896 2.9791 14 6 1.2396 -7.0954 2.4060 15 7 1.4664 -8.0423 3.5006 16 6 1.6614 -9.3486 3.2321 17 8 1.6487 -9.7413 2.0811 18 6 1.8890 -10.3009 4.3328 19 6 1.9068 -9.8727 5.6551 20 6 2.1304 -10.8041 6.6723 21 6 2.3194 -12.1135 6.3909 22 7 2.3093 -12.5746 5.1146 23 7 2.4760 -13.8394 4.5329 24 7 2.3664 -13.6842 3.2568 25 7 2.1475 -12.4514 2.9641 26 6 2.1019 -11.7224 4.0642 27 6 2.0673 -4.6171 0.9651 28 6 1.8138 -3.6529 -0.1981 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6772 -2.6405 0.7363 31 1 0.0964 -1.3346 1.6685 32 1 -0.3837 -3.3840 3.0531 33 1 1.3466 -2.9676 2.9994 34 1 -0.0284 -5.0408 1.2304 35 1 0.1894 -5.6838 3.6491 36 1 1.9424 -5.3984 3.5317 37 1 2.0994 -7.1012 1.7360 38 1 0.3463 -7.3866 1.8534 39 1 1.4762 -7.7292 4.4186 40 1 1.7539 -8.8305 5.8934 41 1 2.1492 -10.4735 7.7004 42 1 2.4855 -12.8080 7.2010 43 1 2.9020 -4.2532 1.5642 44 1 2.3044 -5.6060 0.5726 45 1 1.0402 -4.0604 -0.8489 46 1 2.7332 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714327280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:02 Heat of formation + Delta-G solvation = 132.018169 kcal Electronic energy + Delta-G solvation = -28775.375683 eV Core-core repulsion = 24703.743438 eV Total energy + Delta-G solvation = -4071.632245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.82950 -40.25415 -38.90440 -38.00953 -35.56422 -34.58098 -33.59584 -32.54165 -31.58563 -30.94148 -29.95038 -28.57670 -26.17218 -25.09974 -24.84575 -23.80977 -22.97481 -22.01185 -21.29037 -20.71212 -19.29103 -19.05433 -18.14496 -17.98117 -17.36098 -16.77975 -16.39838 -15.93392 -15.70370 -14.85337 -14.70308 -14.36587 -14.30979 -13.85046 -13.61914 -13.55497 -13.47977 -13.36266 -12.95485 -12.93817 -12.81585 -12.62332 -12.25694 -11.92286 -11.62514 -11.40842 -11.35744 -11.24310 -10.90145 -10.82888 -10.70074 -10.51857 -10.35214 -10.17389 -10.16699 -9.85894 -9.49810 -9.43981 -9.32613 -9.15038 -8.45023 -6.63788 -5.77204 -3.19331 -0.64416 -0.08290 1.08024 1.65507 1.98292 2.59297 2.90110 2.99101 3.38472 3.38808 3.44140 3.45322 3.69123 3.84132 4.16231 4.42626 4.50825 4.68268 4.77708 4.86474 4.91572 4.99169 4.99406 5.22199 5.23497 5.37910 5.44689 5.57443 5.69354 5.71931 5.75831 5.95114 5.98971 6.05450 6.17969 6.24696 6.37508 6.55697 6.63734 6.70894 6.83268 6.87064 7.03489 7.09148 7.39114 7.67615 7.80757 7.82317 7.91792 8.47487 9.23824 9.87540 10.44677 11.31244 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.001716 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.348080 B =16315.521887 C =16741.818832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.125 4.125 14 C 0.117 3.883 15 N -0.720 5.720 16 C 0.556 3.444 17 O -0.496 6.496 18 C -0.095 4.095 19 C -0.020 4.020 20 C -0.145 4.145 21 C 0.129 3.871 22 N -0.310 5.310 23 N -0.106 5.106 24 N -0.007 5.007 25 N -0.288 5.288 26 C 0.272 3.728 27 C -0.130 4.130 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.164 0.836 41 H 0.176 0.824 42 H 0.185 0.815 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -20.696 20.572 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.163 4.163 14 C -0.005 4.005 15 N -0.373 5.373 16 C 0.340 3.660 17 O -0.370 6.370 18 C -0.105 4.105 19 C -0.045 4.045 20 C -0.168 4.168 21 C 0.002 3.998 22 N -0.090 5.090 23 N -0.088 5.088 24 N 0.000 5.000 25 N -0.144 5.144 26 C 0.013 3.987 27 C -0.169 4.169 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.232 0.768 40 H 0.182 0.818 41 H 0.194 0.806 42 H 0.202 0.798 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.618 -22.250 18.761 29.222 hybrid contribution 0.352 1.619 1.271 2.087 sum 2.969 -20.631 20.032 28.909 Atomic orbital electron populations 1.70023 1.05236 1.25527 1.54055 1.25041 0.95282 0.98373 1.01049 0.86379 0.78910 0.83441 0.78107 1.20910 1.21667 1.21099 1.19149 0.92501 0.84899 1.41527 0.91828 1.44047 1.35878 1.01529 1.50088 1.20758 0.88639 0.98116 0.88045 1.22219 0.99855 0.95358 0.99870 1.20976 0.98597 0.94789 0.95055 1.21922 1.02023 0.92913 0.99453 1.21650 1.02598 0.87515 0.88753 1.45914 1.73348 1.06886 1.11169 1.17418 0.78699 0.82071 0.87858 1.90955 1.48027 1.77634 1.20410 1.20364 1.07168 0.87935 0.94992 1.22037 0.90775 1.01574 0.90163 1.21033 1.03092 0.90543 1.02138 1.21824 0.96839 0.96985 0.84128 1.49042 1.43546 1.08370 1.08083 1.82841 1.27287 0.95712 1.02997 1.78087 1.06054 1.10616 1.05227 1.75333 1.22397 0.96024 1.20675 1.23628 0.97713 0.93287 0.84102 1.22124 0.97024 0.98971 0.98810 1.20904 0.97539 0.86952 0.92857 0.93639 0.96561 0.89615 0.93463 0.92766 0.91580 0.91657 0.91460 0.90456 0.90977 0.76807 0.81829 0.80636 0.79772 0.92422 0.93007 0.96552 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.63 2.99 -172.31 -0.52 -15.15 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.13 -2.33 5.36 -26.61 -0.14 -2.47 16 12 C -0.07 -1.11 2.15 -90.58 -0.19 -1.30 16 13 C -0.13 -1.30 4.80 -26.73 -0.13 -1.43 16 14 C 0.12 1.23 5.43 -4.04 -0.02 1.21 16 15 N -0.72 -5.83 5.51 -61.42 -0.34 -6.17 16 16 C 0.56 6.04 7.77 -12.57 -0.10 5.95 16 17 O -0.50 -7.92 16.28 5.26 0.09 -7.83 16 18 C -0.10 -0.78 6.06 -102.72 -0.62 -1.40 16 19 C -0.02 -0.05 9.63 -38.75 -0.37 -0.43 16 20 C -0.14 -0.11 9.92 -40.09 -0.40 -0.51 16 21 C 0.13 0.40 11.15 -16.90 -0.19 0.21 16 22 N -0.31 -2.69 3.94 -10.99 -0.04 -2.74 16 23 N -0.11 -1.22 13.99 60.35 0.84 -0.38 16 24 N -0.01 -0.10 13.36 60.35 0.81 0.71 16 25 N -0.29 -4.26 11.75 32.20 0.38 -3.88 16 26 C 0.27 3.04 7.85 -154.52 -1.21 1.83 16 27 C -0.13 -2.12 5.14 -26.61 -0.14 -2.25 16 28 C 0.14 2.98 6.52 -3.70 -0.02 2.96 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 2.23 6.07 -51.93 -0.31 1.92 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.93 6.53 -51.93 -0.34 0.59 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 1.65 6.58 -40.82 -0.27 1.39 16 40 H 0.16 -0.14 6.49 -52.49 -0.34 -0.48 16 41 H 0.18 -0.59 8.06 -52.48 -0.42 -1.01 16 42 H 0.19 -0.09 8.06 -52.49 -0.42 -0.51 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.75 6.50 -51.93 -0.34 0.41 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -37.43 377.19 -7.51 -44.94 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -6.21 Total: -5.47 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.79 Total: -0.76 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 1.75 Total: -53.04 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.43 -7.51 -44.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714327280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.956 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds