Wall clock time and date at job start Wed Apr 1 2020 04:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48491 * 109.47137 * 239.99680 * 3 2 1 5 5 H 1.48501 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47178 * 119.99377 * 3 2 1 7 7 C 1.38808 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00514 * 163.08055 * 7 2 1 9 9 N 1.36939 * 119.99708 * 343.08787 * 7 2 1 10 10 C 1.46924 * 120.63317 * 331.83907 * 9 7 2 11 11 C 1.53196 * 108.77856 * 233.58999 * 10 9 7 12 12 C 1.53043 * 109.31025 * 305.36607 * 11 10 9 13 13 C 1.53005 * 109.45678 * 181.38458 * 12 11 10 14 14 C 1.53001 * 109.46657 * 174.97067 * 13 12 11 15 15 N 1.46500 * 109.46660 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99950 * 180.02562 * 15 14 13 17 17 O 1.21621 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.47323 * 120.00269 * 180.02562 * 16 15 14 19 19 C 1.39002 * 120.90369 * 359.97438 * 18 16 15 20 20 C 1.39711 * 119.29131 * 180.23694 * 19 18 16 21 21 C 1.35256 * 121.08075 * 359.50514 * 20 19 18 22 22 N 1.35710 * 121.57160 * 0.47282 * 21 20 19 23 23 N 1.40208 * 134.09008 * 179.75562 * 22 21 20 24 24 N 1.29022 * 106.96102 * 180.02562 * 23 22 21 25 25 N 1.28587 * 110.78851 * 0.02562 * 24 23 22 26 26 C 1.32051 * 110.21351 * 359.97438 * 25 24 23 27 27 C 1.53036 * 109.52843 * 61.37198 * 12 11 10 28 28 C 1.46932 * 120.62884 * 151.82196 * 9 7 2 29 29 H 0.96998 * 119.99951 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.58550 * 113.80500 * 10 9 7 31 31 H 1.09004 * 109.70106 * 353.44717 * 10 9 7 32 32 H 1.08996 * 109.49686 * 185.41291 * 11 10 9 33 33 H 1.08995 * 109.49447 * 65.31420 * 11 10 9 34 34 H 1.08996 * 109.45811 * 301.35220 * 12 11 10 35 35 H 1.09000 * 109.47148 * 54.97426 * 13 12 11 36 36 H 1.08995 * 109.46977 * 294.97081 * 13 12 11 37 37 H 1.09000 * 109.47048 * 60.00298 * 14 13 12 38 38 H 1.08995 * 109.47440 * 299.99731 * 14 13 12 39 39 H 0.96997 * 120.00261 * 0.02562 * 15 14 13 40 40 H 1.08002 * 120.35119 * 359.95215 * 19 18 16 41 41 H 1.08007 * 119.45756 * 179.72854 * 20 19 18 42 42 H 1.07997 * 119.21381 * 180.27168 * 21 20 19 43 43 H 1.09000 * 109.50141 * 58.57729 * 27 12 11 44 44 H 1.09002 * 109.49802 * 178.67362 * 27 12 11 45 45 H 1.08999 * 109.58276 * 246.19531 * 28 9 7 46 46 H 1.08996 * 109.58632 * 6.48333 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3622 0.3461 10 6 0.2258 -2.3400 1.2676 11 6 0.4970 -3.3192 2.4141 12 6 0.8116 -4.7008 1.8359 13 6 1.0491 -5.6896 2.9791 14 6 1.2396 -7.0954 2.4060 15 7 1.4664 -8.0423 3.5006 16 6 1.6614 -9.3486 3.2321 17 8 1.6487 -9.7413 2.0811 18 6 1.8890 -10.3009 4.3328 19 6 1.9068 -9.8727 5.6551 20 6 2.1304 -10.8041 6.6723 21 6 2.3194 -12.1135 6.3909 22 7 2.3093 -12.5746 5.1146 23 7 2.4760 -13.8394 4.5329 24 7 2.3664 -13.6842 3.2568 25 7 2.1475 -12.4514 2.9641 26 6 2.1019 -11.7224 4.0642 27 6 2.0673 -4.6171 0.9651 28 6 1.8138 -3.6529 -0.1981 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6772 -2.6405 0.7363 31 1 0.0964 -1.3346 1.6685 32 1 -0.3837 -3.3840 3.0531 33 1 1.3466 -2.9676 2.9994 34 1 -0.0284 -5.0408 1.2304 35 1 0.1894 -5.6838 3.6491 36 1 1.9424 -5.3984 3.5317 37 1 2.0994 -7.1012 1.7360 38 1 0.3463 -7.3866 1.8534 39 1 1.4762 -7.7292 4.4186 40 1 1.7539 -8.8305 5.8934 41 1 2.1492 -10.4735 7.7004 42 1 2.4855 -12.8080 7.2010 43 1 2.9020 -4.2532 1.5642 44 1 2.3044 -5.6060 0.5726 45 1 1.0402 -4.0604 -0.8489 46 1 2.7332 -3.5130 -0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714327280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:01 Heat of formation + Delta-G solvation = 104.076620 kcal Electronic energy + Delta-G solvation = -28776.587320 eV Core-core repulsion = 24703.743438 eV Total energy + Delta-G solvation = -4072.843882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.49931 -40.99092 -39.59756 -39.29247 -36.72336 -35.34613 -34.88156 -33.19501 -32.99312 -31.87506 -31.43469 -29.87962 -27.17653 -26.25279 -25.37566 -24.89224 -24.13373 -23.46368 -22.18152 -21.85441 -20.60453 -19.86241 -18.72227 -18.60449 -18.53955 -18.05119 -16.89514 -16.79776 -16.58117 -16.51318 -15.75127 -15.37607 -15.28695 -15.25569 -14.84639 -14.81039 -14.35817 -14.19860 -13.98514 -13.92528 -13.77881 -13.67353 -13.27908 -13.01220 -12.89644 -12.76922 -12.58336 -12.50381 -12.25957 -12.17627 -12.08962 -11.90989 -11.77121 -11.49373 -11.30972 -11.22468 -10.94243 -10.93137 -10.49983 -10.17458 -9.71092 -8.63707 -7.84859 -5.30422 -1.06516 -0.58817 0.58536 0.95028 1.46542 1.47952 1.49439 1.56821 1.93214 2.28530 2.49066 2.53091 2.84524 3.28800 3.39150 3.59302 3.72364 3.76711 3.89833 3.99744 4.00836 4.15919 4.22449 4.34222 4.38024 4.49295 4.58337 4.63739 4.72285 4.75008 4.79732 4.84261 4.95225 4.99131 5.08478 5.08981 5.16979 5.32699 5.36700 5.39304 5.42414 5.46286 5.52957 5.59980 5.70918 5.86174 6.42098 6.48903 7.16126 7.17007 7.18320 7.90684 8.41932 9.20793 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.001716 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.348080 B =16315.521887 C =16741.818832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.119 4.119 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.122 3.878 15 N -0.699 5.699 16 C 0.555 3.445 17 O -0.564 6.564 18 C -0.138 4.138 19 C 0.027 3.973 20 C -0.113 4.113 21 C 0.117 3.883 22 N -0.306 5.306 23 N -0.123 5.123 24 N -0.041 5.041 25 N -0.348 5.348 26 C 0.251 3.749 27 C -0.118 4.118 28 C 0.136 3.864 29 H 0.250 0.750 30 H -0.011 1.011 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.420 0.580 40 H 0.213 0.787 41 H 0.239 0.761 42 H 0.224 0.776 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.005 0.995 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -20.217 25.978 33.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.001 4.001 15 N -0.353 5.353 16 C 0.341 3.659 17 O -0.443 6.443 18 C -0.147 4.147 19 C 0.002 3.998 20 C -0.136 4.136 21 C -0.009 4.009 22 N -0.086 5.086 23 N -0.106 5.106 24 N -0.034 5.034 25 N -0.207 5.207 26 C -0.006 4.006 27 C -0.156 4.156 28 C 0.011 3.989 29 H 0.059 0.941 30 H 0.007 0.993 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.260 0.740 40 H 0.229 0.771 41 H 0.256 0.744 42 H 0.241 0.759 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.483 -21.776 24.237 32.769 hybrid contribution 0.070 1.553 -0.227 1.571 sum 3.553 -20.223 24.010 31.592 Atomic orbital electron populations 1.70189 1.06656 1.25854 1.55515 1.25811 0.96067 1.01516 1.01394 0.85343 0.77560 0.79211 0.78343 1.20452 1.22003 1.20096 1.19480 0.92736 0.86208 1.40919 0.91917 1.44343 1.36057 1.02148 1.50948 1.20644 0.87365 0.97946 0.89394 1.22002 1.01078 0.95027 0.97650 1.20895 0.97324 0.94570 0.96337 1.21706 1.04116 0.90820 0.97732 1.21406 1.01218 0.88187 0.89295 1.45588 1.72198 1.05626 1.11838 1.17859 0.77357 0.82894 0.87771 1.90925 1.51246 1.78801 1.23292 1.20201 1.12187 0.85960 0.96387 1.22772 0.85119 1.04191 0.87737 1.21870 0.98896 0.88585 1.04223 1.23015 0.95860 0.99250 0.82741 1.49145 1.43130 1.06952 1.09402 1.82609 1.28075 0.97505 1.02456 1.77991 1.07705 1.11180 1.06503 1.75136 1.25052 0.96762 1.23710 1.23912 0.98154 0.94606 0.83952 1.21973 0.97984 0.98439 0.97245 1.21085 0.96667 0.86509 0.94674 0.94144 0.99298 0.93059 0.90830 0.92550 0.92566 0.88937 0.89547 0.92228 0.92571 0.74039 0.77059 0.74450 0.75915 0.92170 0.90972 0.97709 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.63 11.19 21.65 0.24 -55.39 16 2 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 3 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.60 9.58 84.03 0.81 -13.80 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -30.80 2.99 -699.07 -2.09 -32.89 16 10 C 0.17 8.11 5.30 86.36 0.46 8.57 16 11 C -0.12 -3.90 5.36 30.67 0.16 -3.74 16 12 C -0.07 -1.97 2.15 -10.77 -0.02 -1.99 16 13 C -0.11 -1.75 4.80 30.60 0.15 -1.60 16 14 C 0.12 2.29 5.43 86.38 0.47 2.76 16 15 N -0.70 -9.05 5.51 -466.47 -2.57 -11.62 16 16 C 0.55 11.57 7.77 86.63 0.67 12.25 16 17 O -0.56 -19.03 16.28 -4.10 -0.07 -19.10 16 18 C -0.14 -1.95 6.06 -18.63 -0.11 -2.06 16 19 C 0.03 -0.02 9.63 22.81 0.22 0.20 16 20 C -0.11 0.66 9.92 21.94 0.22 0.88 16 21 C 0.12 0.18 11.15 83.41 0.93 1.11 16 22 N -0.31 -4.97 3.94 -188.69 -0.74 -5.71 16 23 N -0.12 -2.97 13.99 37.02 0.52 -2.45 16 24 N -0.04 -1.27 13.36 37.02 0.49 -0.77 16 25 N -0.35 -11.29 11.75 -52.05 -0.61 -11.90 16 26 C 0.25 5.69 7.85 135.75 1.07 6.76 16 27 C -0.12 -3.68 5.14 30.67 0.16 -3.52 16 28 C 0.14 5.73 6.52 86.36 0.56 6.29 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.05 2.75 6.07 -2.38 -0.01 2.74 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.35 6.53 -2.39 -0.02 1.34 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.42 1.06 6.58 -92.71 -0.61 0.45 16 40 H 0.21 -2.24 6.49 -2.91 -0.02 -2.26 16 41 H 0.24 -4.11 8.06 -2.91 -0.02 -4.14 16 42 H 0.22 -1.49 8.06 -2.91 -0.02 -1.52 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.99 6.50 -2.39 -0.02 1.97 16 45 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 Total: -1.00 -95.57 377.19 3.76 -91.81 By element: Atomic # 1 Polarization: -8.74 SS G_CDS: 0.41 Total: -8.33 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.15 Total: 9.55 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -4.76 Total: -120.74 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.07 Total: -19.10 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -95.57 3.76 -91.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714327280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.886 kcal (2) G-P(sol) polarization free energy of solvation -95.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds