Wall clock time and date at job start Wed Apr 1 2020 04:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47447 * 270.00281 * 3 2 1 5 5 H 1.48502 * 109.47145 * 30.00840 * 3 2 1 6 6 H 1.48507 * 109.47021 * 150.00074 * 3 2 1 7 7 C 1.38815 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.47742 * 125.82589 * 346.81720 * 9 7 2 11 11 C 1.54912 * 104.84137 * 204.25262 * 10 9 7 12 12 C 1.55160 * 101.57965 * 322.90157 * 11 10 9 13 13 C 1.47023 * 125.64373 * 166.81692 * 9 7 2 14 14 H 1.09000 * 109.88421 * 59.32236 * 13 9 7 15 15 C 1.52997 * 109.88188 * 298.31241 * 13 9 7 16 16 C 1.52995 * 109.47265 * 176.68228 * 15 13 9 17 17 C 1.52998 * 109.47517 * 185.08314 * 16 15 13 18 18 N 1.46505 * 109.47322 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99968 * 180.02562 * 18 17 16 20 20 O 1.21543 * 119.99975 * 359.97438 * 19 18 17 21 21 C 1.47875 * 120.00280 * 180.02562 * 19 18 17 22 22 C 1.39455 * 121.11023 * 359.97438 * 21 19 18 23 23 C 1.38614 * 119.37259 * 180.02562 * 22 21 19 24 24 N 1.31588 * 121.64108 * 359.97438 * 23 22 21 25 25 C 1.32217 * 121.86236 * 0.02562 * 24 23 22 26 26 N 1.37204 * 134.67203 * 179.97438 * 25 24 23 27 27 H 0.96998 * 125.87175 * 359.97438 * 26 25 24 28 28 N 1.28775 * 108.26206 * 180.02562 * 26 25 24 29 29 N 1.28696 * 111.75992 * 359.97438 * 28 26 25 30 30 C 1.34403 * 109.14798 * 359.73480 * 29 28 26 31 31 H 0.96994 * 120.00320 * 359.97438 * 1 2 3 32 32 H 1.08993 * 110.43526 * 85.36805 * 10 9 7 33 33 H 1.09007 * 110.28766 * 323.04934 * 10 9 7 34 34 H 1.09003 * 111.00341 * 204.83040 * 11 10 9 35 35 H 1.08994 * 111.03903 * 80.98664 * 11 10 9 36 36 H 1.08996 * 110.72318 * 277.14353 * 12 11 10 37 37 H 1.08996 * 110.72213 * 153.86789 * 12 11 10 38 38 H 1.08994 * 109.47369 * 56.68287 * 15 13 9 39 39 H 1.09004 * 109.47217 * 296.68336 * 15 13 9 40 40 H 1.09005 * 109.47364 * 65.08354 * 16 15 13 41 41 H 1.09006 * 109.47432 * 305.08141 * 16 15 13 42 42 H 1.08999 * 109.47182 * 299.99967 * 17 16 15 43 43 H 1.08999 * 109.47410 * 59.99799 * 17 16 15 44 44 H 0.96996 * 119.99679 * 359.97438 * 18 17 16 45 45 H 1.07995 * 120.31395 * 0.03131 * 22 21 19 46 46 H 1.08005 * 119.18229 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1168 -2.5538 0.2732 11 6 -0.2622 -4.0163 0.7629 12 6 0.7706 -4.7491 -0.1336 13 6 1.9045 -3.7117 -0.2735 14 1 2.6944 -3.9265 0.4462 15 6 2.4713 -3.7487 -1.6942 16 6 3.1440 -5.1007 -1.9398 17 6 3.8202 -5.0921 -3.3122 18 7 4.4639 -6.3869 -3.5476 19 6 5.1262 -6.6106 -4.6999 20 8 5.1891 -5.7383 -5.5439 21 6 5.7755 -7.9178 -4.9378 22 6 5.7175 -8.9350 -3.9857 23 6 6.3395 -10.1462 -4.2460 24 7 6.9852 -10.3626 -5.3719 25 6 7.0758 -9.4387 -6.3133 26 7 7.6644 -9.3772 -7.5511 27 1 8.1662 -10.0892 -7.9778 28 7 7.4372 -8.2114 -8.0486 29 7 6.7429 -7.4789 -7.2500 30 6 6.4680 -8.1792 -6.1362 31 1 -0.4850 0.8400 0.0004 32 1 -0.6970 -2.3988 -0.6364 33 1 -0.4361 -1.8599 1.0508 34 1 -1.2703 -4.3900 0.5833 35 1 0.0030 -4.1044 1.8164 36 1 0.3393 -4.9827 -1.1070 37 1 1.1332 -5.6531 0.3556 38 1 3.2043 -2.9511 -1.8138 39 1 1.6626 -3.6096 -2.4118 40 1 2.3937 -5.8908 -1.9094 41 1 3.8921 -5.2800 -1.1674 42 1 3.0723 -4.9129 -4.0846 43 1 4.5705 -4.3021 -3.3427 44 1 4.4140 -7.0829 -2.8739 45 1 5.1929 -8.7807 -3.0544 46 1 6.2922 -10.9320 -3.5066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714519533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:25 Heat of formation + Delta-G solvation = 112.812058 kcal Electronic energy + Delta-G solvation = -28661.408450 eV Core-core repulsion = 24588.943365 eV Total energy + Delta-G solvation = -4072.465085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.87971 -40.31569 -39.06001 -37.83250 -35.64670 -34.66035 -33.25600 -32.50175 -31.86758 -31.30816 -29.39772 -28.18995 -26.12540 -24.84691 -24.39291 -24.18864 -23.19234 -21.60166 -21.33020 -20.14014 -19.37220 -19.06381 -18.97175 -17.88919 -17.08837 -16.76642 -16.20155 -15.83355 -15.74226 -15.27627 -15.06561 -14.51705 -14.36979 -14.04748 -13.79984 -13.71747 -13.42369 -12.90377 -12.77349 -12.37127 -12.14064 -12.05368 -11.98850 -11.91134 -11.69460 -11.46494 -11.02949 -10.82427 -10.76465 -10.57713 -10.57126 -10.07437 -9.99857 -9.95209 -9.84240 -9.76366 -9.60916 -9.60028 -9.58678 -9.20910 -8.55887 -6.75430 -5.71059 -3.05866 -0.46469 0.32024 1.64646 1.73106 2.45105 2.69551 3.19114 3.27011 3.41945 3.47511 3.48543 3.70613 3.90845 3.99059 4.21643 4.51407 4.58036 4.86527 4.94636 5.00778 5.15225 5.16215 5.35844 5.46219 5.59323 5.60560 5.61509 5.72928 5.85035 5.93584 6.00148 6.08129 6.09065 6.23815 6.31328 6.34878 6.42710 6.57442 6.70553 6.73197 6.92751 6.96324 7.17379 7.21833 7.57929 7.64978 7.69774 7.83442 7.92368 8.32273 9.23311 9.85277 10.54316 11.41101 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.001908 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.577195 B =14672.484587 C =15807.835267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.171 3.829 11 C -0.150 4.150 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.118 3.882 18 N -0.718 5.718 19 C 0.546 3.454 20 O -0.497 6.497 21 C -0.005 4.005 22 C -0.142 4.142 23 C 0.162 3.838 24 N -0.459 5.459 25 C 0.214 3.786 26 N -0.405 5.405 27 H 0.458 0.542 28 N 0.004 4.996 29 N -0.208 5.208 30 C 0.002 3.998 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.399 0.601 45 H 0.160 0.840 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 -25.745 -6.890 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.166 4.166 17 C -0.005 4.005 18 N -0.371 5.371 19 C 0.330 3.670 20 O -0.371 6.371 21 C -0.022 4.022 22 C -0.166 4.166 23 C -0.010 4.010 24 N -0.173 5.173 25 C -0.030 4.030 26 N -0.135 5.135 27 H 0.306 0.694 28 N 0.021 4.979 29 N -0.084 5.084 30 C -0.127 4.127 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.234 0.766 45 H 0.177 0.823 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.018 -24.572 -8.920 28.771 hybrid contribution 0.264 0.092 0.905 0.947 sum 12.282 -24.480 -8.014 28.537 Atomic orbital electron populations 1.69932 1.04961 1.25068 1.56617 1.24877 0.95666 0.97739 1.02041 0.86177 0.78672 0.83633 0.77641 1.21525 1.21748 1.20684 1.18962 0.90307 0.82340 1.43732 0.90765 1.44617 1.05349 1.01001 1.81112 1.21485 0.85025 0.90208 0.98644 1.23009 0.97407 0.99785 0.98708 1.22590 0.97129 0.97089 0.99393 1.20919 0.93804 0.86989 0.92823 0.95190 1.22035 1.00111 0.94243 0.99886 1.21848 0.99707 1.00366 0.94646 1.21607 0.97023 0.83529 0.98324 1.45984 1.54712 1.17824 1.18615 1.17890 0.79766 0.86487 0.82858 1.90908 1.58161 1.44385 1.43633 1.19746 0.95923 0.95408 0.91117 1.22439 1.00631 0.93417 1.00066 1.22870 0.90146 0.96159 0.91846 1.66333 1.18179 1.31923 1.00829 1.19877 0.99695 0.93224 0.90171 1.44733 1.42181 1.14545 1.12086 0.69361 1.78296 1.10653 0.88958 1.20012 1.75629 1.10419 1.22297 1.00040 1.20147 1.03160 0.93018 0.96350 0.93755 0.95934 0.91017 0.92584 0.92500 0.92043 0.92653 0.91629 0.92132 0.91587 0.91632 0.91016 0.90932 0.76632 0.82259 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.54 55.49 0.59 -26.27 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.12 9.75 -15.06 -0.15 -6.27 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.70 3.14 -162.31 -0.51 -15.21 16 10 C 0.17 4.08 5.46 -2.35 -0.01 4.07 16 11 C -0.15 -2.75 7.09 -24.58 -0.17 -2.92 16 12 C -0.12 -2.01 5.61 -24.89 -0.14 -2.15 16 13 C 0.16 3.11 3.18 -66.95 -0.21 2.89 16 14 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.12 -2.06 4.69 -26.73 -0.13 -2.19 16 16 C -0.13 -1.49 5.07 -26.73 -0.14 -1.62 16 17 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 18 N -0.72 -6.91 5.51 -61.24 -0.34 -7.25 16 19 C 0.55 6.75 7.79 -12.32 -0.10 6.65 16 20 O -0.50 -8.52 16.27 5.33 0.09 -8.44 16 21 C -0.01 -0.05 5.92 -104.51 -0.62 -0.67 16 22 C -0.14 -0.73 9.61 -38.99 -0.37 -1.10 16 23 C 0.16 0.74 11.14 -17.52 -0.20 0.54 16 24 N -0.46 -3.41 10.35 -12.38 -0.13 -3.54 16 25 C 0.21 1.98 8.56 -156.21 -1.34 0.64 16 26 N -0.41 -3.12 7.06 31.11 0.22 -2.90 16 27 H 0.46 1.54 8.96 -190.26 -1.71 -0.16 16 28 N 0.00 0.04 13.29 60.35 0.80 0.84 16 29 N -0.21 -2.90 11.92 32.23 0.38 -2.51 16 30 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 1.92 6.83 -51.92 -0.35 1.56 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.23 7.89 -51.93 -0.41 0.82 16 39 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.07 0.68 7.57 -51.93 -0.39 0.28 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.40 2.31 6.62 -40.82 -0.27 2.04 16 45 H 0.16 0.22 6.53 -52.49 -0.34 -0.13 16 46 H 0.18 0.06 8.06 -52.48 -0.42 -0.36 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -36.80 380.51 -10.11 -46.91 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.65 Total: -2.88 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.28 Total: -1.58 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 1.02 Total: -56.84 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.80 -10.11 -46.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714519533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.726 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds