Wall clock time and date at job start Wed Apr 1 2020 04:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47447 * 270.00281 * 3 2 1 5 5 H 1.48502 * 109.47145 * 30.00840 * 3 2 1 6 6 H 1.48507 * 109.47021 * 150.00074 * 3 2 1 7 7 C 1.38815 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.47742 * 125.82589 * 346.81720 * 9 7 2 11 11 C 1.54912 * 104.84137 * 204.25262 * 10 9 7 12 12 C 1.55160 * 101.57965 * 322.90157 * 11 10 9 13 13 C 1.47023 * 125.64373 * 166.81692 * 9 7 2 14 14 H 1.09000 * 109.88421 * 59.32236 * 13 9 7 15 15 C 1.52997 * 109.88188 * 298.31241 * 13 9 7 16 16 C 1.52995 * 109.47265 * 176.68228 * 15 13 9 17 17 C 1.52998 * 109.47517 * 185.08314 * 16 15 13 18 18 N 1.46505 * 109.47322 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99968 * 180.02562 * 18 17 16 20 20 O 1.21543 * 119.99975 * 359.97438 * 19 18 17 21 21 C 1.47875 * 120.00280 * 180.02562 * 19 18 17 22 22 C 1.39455 * 121.11023 * 359.97438 * 21 19 18 23 23 C 1.38614 * 119.37259 * 180.02562 * 22 21 19 24 24 N 1.31588 * 121.64108 * 359.97438 * 23 22 21 25 25 C 1.32217 * 121.86236 * 0.02562 * 24 23 22 26 26 N 1.37204 * 134.67203 * 179.97438 * 25 24 23 27 27 H 0.96998 * 125.87175 * 359.97438 * 26 25 24 28 28 N 1.28775 * 108.26206 * 180.02562 * 26 25 24 29 29 N 1.28696 * 111.75992 * 359.97438 * 28 26 25 30 30 C 1.34403 * 109.14798 * 359.73480 * 29 28 26 31 31 H 0.96994 * 120.00320 * 359.97438 * 1 2 3 32 32 H 1.08993 * 110.43526 * 85.36805 * 10 9 7 33 33 H 1.09007 * 110.28766 * 323.04934 * 10 9 7 34 34 H 1.09003 * 111.00341 * 204.83040 * 11 10 9 35 35 H 1.08994 * 111.03903 * 80.98664 * 11 10 9 36 36 H 1.08996 * 110.72318 * 277.14353 * 12 11 10 37 37 H 1.08996 * 110.72213 * 153.86789 * 12 11 10 38 38 H 1.08994 * 109.47369 * 56.68287 * 15 13 9 39 39 H 1.09004 * 109.47217 * 296.68336 * 15 13 9 40 40 H 1.09005 * 109.47364 * 65.08354 * 16 15 13 41 41 H 1.09006 * 109.47432 * 305.08141 * 16 15 13 42 42 H 1.08999 * 109.47182 * 299.99967 * 17 16 15 43 43 H 1.08999 * 109.47410 * 59.99799 * 17 16 15 44 44 H 0.96996 * 119.99679 * 359.97438 * 18 17 16 45 45 H 1.07995 * 120.31395 * 0.03131 * 22 21 19 46 46 H 1.08005 * 119.18229 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1168 -2.5538 0.2732 11 6 -0.2622 -4.0163 0.7629 12 6 0.7706 -4.7491 -0.1336 13 6 1.9045 -3.7117 -0.2735 14 1 2.6944 -3.9265 0.4462 15 6 2.4713 -3.7487 -1.6942 16 6 3.1440 -5.1007 -1.9398 17 6 3.8202 -5.0921 -3.3122 18 7 4.4639 -6.3869 -3.5476 19 6 5.1262 -6.6106 -4.6999 20 8 5.1891 -5.7383 -5.5439 21 6 5.7755 -7.9178 -4.9378 22 6 5.7175 -8.9350 -3.9857 23 6 6.3395 -10.1462 -4.2460 24 7 6.9852 -10.3626 -5.3719 25 6 7.0758 -9.4387 -6.3133 26 7 7.6644 -9.3772 -7.5511 27 1 8.1662 -10.0892 -7.9778 28 7 7.4372 -8.2114 -8.0486 29 7 6.7429 -7.4789 -7.2500 30 6 6.4680 -8.1792 -6.1362 31 1 -0.4850 0.8400 0.0004 32 1 -0.6970 -2.3988 -0.6364 33 1 -0.4361 -1.8599 1.0508 34 1 -1.2703 -4.3900 0.5833 35 1 0.0030 -4.1044 1.8164 36 1 0.3393 -4.9827 -1.1070 37 1 1.1332 -5.6531 0.3556 38 1 3.2043 -2.9511 -1.8138 39 1 1.6626 -3.6096 -2.4118 40 1 2.3937 -5.8908 -1.9094 41 1 3.8921 -5.2800 -1.1674 42 1 3.0723 -4.9129 -4.0846 43 1 4.5705 -4.3021 -3.3427 44 1 4.4140 -7.0829 -2.8739 45 1 5.1929 -8.7807 -3.0544 46 1 6.2922 -10.9320 -3.5066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714519533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:25 Heat of formation + Delta-G solvation = 84.636143 kcal Electronic energy + Delta-G solvation = -28662.630249 eV Core-core repulsion = 24588.943365 eV Total energy + Delta-G solvation = -4073.686884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.54886 -41.12091 -39.76896 -39.37985 -36.74547 -35.36454 -34.71503 -33.89970 -32.82820 -31.90436 -31.20288 -29.51550 -26.98570 -26.49383 -25.53196 -24.97663 -24.09034 -22.70196 -22.16311 -21.82658 -20.74260 -19.96086 -19.64197 -18.67607 -18.54217 -17.77854 -17.06758 -16.98540 -16.67592 -16.52937 -16.06264 -15.76557 -15.64527 -15.47337 -14.96099 -14.41627 -14.26782 -13.94940 -13.87063 -13.65734 -13.54057 -13.50216 -13.10981 -12.95893 -12.80397 -12.72909 -12.71234 -12.63251 -12.20791 -11.98043 -11.77822 -11.67158 -11.52258 -11.41057 -11.24889 -11.08952 -10.65898 -10.63391 -10.43880 -10.31983 -10.08416 -8.75120 -7.82902 -5.17576 -1.08478 -0.20016 0.96224 1.11792 1.44756 1.46752 1.54287 1.72082 1.87230 2.51309 2.53848 2.69064 3.14383 3.31329 3.35210 3.40177 3.73208 3.74110 3.98100 4.06532 4.14662 4.20958 4.29832 4.34977 4.35769 4.41428 4.48669 4.67110 4.71917 4.84409 4.88066 4.91323 5.04721 5.09511 5.18822 5.20536 5.28830 5.33356 5.41948 5.53782 5.58334 5.64072 5.72276 5.76925 5.83916 6.30581 6.41886 6.45927 6.98839 7.12462 7.15283 7.85858 8.52742 9.28407 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.001908 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.577195 B =14672.484587 C =15807.835267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.039 0.961 15 C -0.115 4.115 16 C -0.106 4.106 17 C 0.124 3.876 18 N -0.696 5.696 19 C 0.545 3.455 20 O -0.561 6.561 21 C -0.041 4.041 22 C -0.102 4.102 23 C 0.177 3.823 24 N -0.463 5.463 25 C 0.207 3.793 26 N -0.382 5.382 27 H 0.474 0.526 28 N -0.015 5.015 29 N -0.265 5.265 30 C -0.028 4.028 31 H 0.244 0.756 32 H -0.011 1.011 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.422 0.578 45 H 0.208 0.792 46 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 -30.479 -4.563 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.345 5.345 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.147 4.147 13 C 0.045 3.955 14 H 0.056 0.944 15 C -0.155 4.155 16 C -0.145 4.145 17 C 0.000 4.000 18 N -0.350 5.350 19 C 0.331 3.669 20 O -0.439 6.439 21 C -0.057 4.057 22 C -0.125 4.125 23 C 0.004 3.996 24 N -0.177 5.177 25 C -0.036 4.036 26 N -0.116 5.116 27 H 0.326 0.674 28 N 0.003 4.997 29 N -0.140 5.140 30 C -0.158 4.158 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.261 0.739 45 H 0.224 0.776 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 13.009 -29.381 -6.593 32.802 hybrid contribution -0.014 1.409 0.296 1.439 sum 12.995 -27.972 -6.297 31.480 Atomic orbital electron populations 1.70146 1.06248 1.25003 1.58583 1.25639 0.96493 1.00883 1.03153 0.85219 0.77908 0.79878 0.77243 1.21854 1.22191 1.19275 1.19299 0.90701 0.83781 1.41774 0.90529 1.44943 1.05783 1.02371 1.81371 1.21294 0.84547 0.93481 0.96022 1.22877 0.99747 0.95579 0.99401 1.22597 0.94890 0.97344 0.99917 1.21246 0.95211 0.85260 0.93775 0.94358 1.21838 0.98938 0.96663 0.98047 1.21646 1.00537 0.97701 0.94571 1.21331 0.96129 0.84275 0.98248 1.45659 1.53442 1.17415 1.18476 1.18345 0.79150 0.86947 0.82454 1.90876 1.60579 1.46642 1.45776 1.19701 0.98111 0.95559 0.92366 1.23042 0.97979 0.91672 0.99815 1.23927 0.87420 0.96933 0.91332 1.66524 1.18783 1.31131 1.01302 1.19970 0.99981 0.92862 0.90834 1.44723 1.41028 1.14067 1.11760 0.67396 1.78178 1.11260 0.89999 1.20278 1.75535 1.12435 1.24227 1.01826 1.20558 1.04534 0.94056 0.96684 0.94624 0.99332 0.95092 0.90201 0.91743 0.91032 0.87978 0.94692 0.94263 0.88499 0.89310 0.92862 0.93213 0.73866 0.77566 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 10.54 21.65 0.23 -57.92 16 2 C -0.07 -3.97 5.47 84.86 0.46 -3.51 16 3 Si 0.97 46.83 29.55 68.60 2.03 48.85 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.23 -12.57 9.75 84.03 0.82 -11.75 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -30.87 3.14 -667.44 -2.09 -32.96 16 10 C 0.17 8.37 5.46 86.79 0.47 8.84 16 11 C -0.14 -4.69 7.09 31.99 0.23 -4.46 16 12 C -0.11 -3.08 5.61 31.78 0.18 -2.90 16 13 C 0.15 5.47 3.18 45.34 0.14 5.62 16 14 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.11 -3.76 4.69 30.59 0.14 -3.61 16 16 C -0.11 -2.12 5.07 30.59 0.16 -1.97 16 17 C 0.12 2.84 5.67 86.38 0.49 3.33 16 18 N -0.70 -11.61 5.51 -465.95 -2.57 -14.18 16 19 C 0.55 13.22 7.79 86.80 0.68 13.90 16 20 O -0.56 -20.41 16.27 -3.85 -0.06 -20.48 16 21 C -0.04 -0.75 5.92 -19.79 -0.12 -0.87 16 22 C -0.10 -0.52 9.61 22.65 0.22 -0.30 16 23 C 0.18 0.60 11.14 84.82 0.94 1.55 16 24 N -0.46 -5.25 10.35 -193.10 -2.00 -7.25 16 25 C 0.21 3.58 8.56 134.17 1.15 4.73 16 26 N -0.38 -5.86 7.06 -55.48 -0.39 -6.26 16 27 H 0.47 2.95 8.96 -219.84 -1.97 0.98 16 28 N -0.01 -0.34 13.29 37.02 0.49 0.15 16 29 N -0.27 -7.93 11.92 -51.93 -0.62 -8.55 16 30 C -0.03 -0.66 6.97 40.06 0.28 -0.38 16 31 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 32 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 33 H 0.03 1.72 6.83 -2.38 -0.02 1.71 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.90 7.79 -2.39 -0.02 1.88 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 39 H 0.04 1.43 8.07 -2.38 -0.02 1.41 16 40 H 0.10 1.42 7.57 -2.38 -0.02 1.41 16 41 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.42 2.67 6.62 -92.71 -0.61 2.06 16 45 H 0.21 -1.03 6.53 -2.91 -0.02 -1.05 16 46 H 0.24 -1.80 8.06 -2.91 -0.02 -1.83 16 Total: -1.00 -91.46 380.51 -0.29 -91.75 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -1.55 Total: -1.37 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.25 Total: 8.21 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.95 Total: -126.97 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -91.46 -0.29 -91.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714519533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.389 kcal (2) G-P(sol) polarization free energy of solvation -91.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds