Wall clock time and date at job start Wed Apr 1 2020 04:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47038 * 299.99989 * 3 2 1 6 6 H 1.48503 * 109.47128 * 60.00122 * 3 2 1 7 7 C 1.38811 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99718 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64596 * 14.64453 * 9 7 2 11 11 C 1.54905 * 104.83193 * 155.90737 * 10 9 7 12 12 C 1.55159 * 101.58543 * 37.00127 * 11 10 9 13 13 C 1.47019 * 125.64739 * 194.67647 * 9 7 2 14 14 H 1.08997 * 109.88705 * 300.60138 * 13 9 7 15 15 C 1.53003 * 109.88284 * 61.61204 * 13 9 7 16 16 C 1.52996 * 109.47327 * 185.23551 * 15 13 9 17 17 C 1.53000 * 109.47068 * 174.94829 * 16 15 13 18 18 N 1.46498 * 109.47019 * 180.02562 * 17 16 15 19 19 C 1.34774 * 120.00147 * 179.97438 * 18 17 16 20 20 O 1.21547 * 119.99795 * 359.97438 * 19 18 17 21 21 C 1.47878 * 120.00146 * 180.27347 * 19 18 17 22 22 C 1.39446 * 121.11483 * 359.44608 * 21 19 18 23 23 C 1.38620 * 119.37473 * 179.77131 * 22 21 19 24 24 N 1.31581 * 121.63390 * 0.52202 * 23 22 21 25 25 C 1.32204 * 121.86794 * 359.73189 * 24 23 22 26 26 N 1.37215 * 134.67502 * 180.02562 * 25 24 23 27 27 H 0.96998 * 125.86740 * 359.97438 * 26 25 24 28 28 N 1.28777 * 108.26535 * 179.97438 * 26 25 24 29 29 N 1.28697 * 111.75497 * 0.02562 * 28 26 25 30 30 C 1.34392 * 109.15037 * 0.02562 * 29 28 26 31 31 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 32 32 H 1.09008 * 110.35958 * 274.74107 * 10 9 7 33 33 H 1.08994 * 110.36780 * 37.06513 * 10 9 7 34 34 H 1.08996 * 111.00620 * 155.08246 * 11 10 9 35 35 H 1.09005 * 111.00450 * 278.88989 * 11 10 9 36 36 H 1.08995 * 110.72259 * 206.13692 * 12 11 10 37 37 H 1.09004 * 110.71281 * 82.86147 * 12 11 10 38 38 H 1.09003 * 109.47077 * 65.23464 * 15 13 9 39 39 H 1.09000 * 109.46777 * 305.23514 * 15 13 9 40 40 H 1.09002 * 109.46975 * 54.94690 * 16 15 13 41 41 H 1.09000 * 109.46945 * 294.95045 * 16 15 13 42 42 H 1.08994 * 109.47427 * 59.99741 * 17 16 15 43 43 H 1.09003 * 109.46889 * 299.99394 * 17 16 15 44 44 H 0.96998 * 120.00362 * 359.97438 * 18 17 16 45 45 H 1.08008 * 120.31454 * 0.02562 * 22 21 19 46 46 H 1.07998 * 119.17788 * 180.23129 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3029 11 6 -0.2477 -4.0214 -0.7747 12 6 0.7643 -4.7443 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7027 -3.9324 -0.3988 15 6 2.4356 -3.7266 1.7341 16 6 3.1445 -5.0569 1.9957 17 6 3.7901 -5.0267 3.3825 18 7 4.4694 -6.3003 3.6328 19 6 5.1133 -6.5027 4.7993 20 8 5.1308 -5.6285 5.6435 21 6 5.8042 -7.7861 5.0494 22 6 5.7945 -8.8068 4.0994 23 6 6.4581 -9.9935 4.3697 24 7 7.0906 -10.1869 5.5071 25 6 7.1319 -9.2604 6.4492 26 7 7.6958 -9.1781 7.6974 27 1 8.2139 -9.8723 8.1339 28 7 7.4188 -8.0209 8.1899 29 7 6.7137 -7.3134 7.3784 30 6 6.4881 -8.0211 6.2584 31 1 -0.4850 0.8400 0.0004 32 1 -0.7062 -2.3831 0.5924 33 1 -0.4091 -1.8689 -1.0966 34 1 -1.2603 -4.3898 -0.6106 35 1 0.0384 -4.1245 -1.8214 36 1 1.1341 -5.6561 -0.3158 37 1 0.3123 -4.9628 1.1206 38 1 1.6080 -3.6121 2.4341 39 1 3.1410 -2.9064 1.8681 40 1 3.9142 -5.2132 1.2399 41 1 2.4199 -5.8699 1.9498 42 1 3.0204 -4.8703 4.1383 43 1 4.5148 -4.2137 3.4282 44 1 4.4558 -6.9979 2.9589 45 1 5.2784 -8.6725 3.1602 46 1 6.4517 -10.7805 3.6301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714519534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:29 Heat of formation + Delta-G solvation = 84.171845 kcal Electronic energy + Delta-G solvation = -28665.312197 eV Core-core repulsion = 24591.605180 eV Total energy + Delta-G solvation = -4073.707018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.54866 -41.12027 -39.77046 -39.39224 -36.74905 -35.36442 -34.71642 -33.90629 -32.83032 -31.90445 -31.20215 -29.52843 -26.98898 -26.49225 -25.53468 -24.97712 -24.08853 -22.68651 -22.16210 -21.83396 -20.75915 -19.96460 -19.64223 -18.67817 -18.54235 -17.77842 -17.06594 -16.97837 -16.67912 -16.53020 -16.06775 -15.76492 -15.64888 -15.47670 -14.96200 -14.41244 -14.26398 -13.95287 -13.88059 -13.66611 -13.54046 -13.50192 -13.11119 -12.96800 -12.80742 -12.74272 -12.70872 -12.62301 -12.20361 -11.94622 -11.77703 -11.68340 -11.53127 -11.41758 -11.25762 -11.09007 -10.65680 -10.63429 -10.43920 -10.31941 -10.08391 -8.74191 -7.83916 -5.18767 -1.08462 -0.20006 0.96263 1.11768 1.44305 1.45911 1.55148 1.72056 1.87319 2.50918 2.53879 2.69066 3.14379 3.31348 3.34802 3.40156 3.73269 3.74552 3.97973 4.06775 4.14623 4.21147 4.29732 4.35019 4.35879 4.41205 4.48831 4.67406 4.71917 4.84424 4.87978 4.91495 5.04853 5.09787 5.18741 5.20523 5.28796 5.33454 5.42272 5.53817 5.58402 5.64083 5.71813 5.77080 5.83770 6.30587 6.41934 6.45922 6.98852 7.12483 7.15489 7.85930 8.52540 9.27884 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.001914 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.449703 B =14625.099077 C =15755.958316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.040 0.960 15 C -0.115 4.115 16 C -0.106 4.106 17 C 0.124 3.876 18 N -0.696 5.696 19 C 0.545 3.455 20 O -0.561 6.561 21 C -0.041 4.041 22 C -0.102 4.102 23 C 0.177 3.823 24 N -0.463 5.463 25 C 0.207 3.793 26 N -0.382 5.382 27 H 0.474 0.526 28 N -0.015 5.015 29 N -0.265 5.265 30 C -0.028 4.028 31 H 0.244 0.756 32 H -0.011 1.011 33 H 0.027 0.973 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.422 0.578 45 H 0.208 0.792 46 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -30.209 4.907 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.344 5.344 10 C 0.048 3.952 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.057 0.943 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.000 4.000 18 N -0.350 5.350 19 C 0.331 3.669 20 O -0.439 6.439 21 C -0.057 4.057 22 C -0.125 4.125 23 C 0.004 3.996 24 N -0.177 5.177 25 C -0.036 4.036 26 N -0.116 5.116 27 H 0.326 0.674 28 N 0.003 4.997 29 N -0.140 5.140 30 C -0.158 4.158 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.261 0.739 45 H 0.224 0.776 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 13.437 -29.095 6.957 32.794 hybrid contribution -0.026 1.418 -0.329 1.456 sum 13.410 -27.677 6.628 31.461 Atomic orbital electron populations 1.70156 1.06280 1.24964 1.58531 1.25660 0.96482 1.00917 1.03049 0.85156 0.78412 0.80186 0.76539 1.19018 1.21931 1.22420 1.19329 0.90703 0.83759 1.41754 0.90551 1.44878 1.06562 1.02691 1.80281 1.21208 0.84731 0.93326 0.95918 1.22880 0.99821 0.95564 0.99351 1.22596 0.95029 0.97424 0.99708 1.21254 0.95306 0.85282 0.93615 0.94258 1.21843 0.98905 0.96782 0.97975 1.21643 1.00532 0.97948 0.94323 1.21330 0.95709 0.84825 0.98113 1.45659 1.53237 1.18689 1.17406 1.18348 0.79285 0.86751 0.82517 1.90877 1.61023 1.45688 1.46288 1.19701 0.97996 0.95760 0.92279 1.23044 0.97920 0.91581 0.99967 1.23925 0.87440 0.96997 0.91242 1.66513 1.19754 1.30220 1.01253 1.19966 0.99956 0.93147 0.90571 1.44727 1.40809 1.14823 1.11226 0.67398 1.78180 1.10417 0.90668 1.20447 1.75531 1.12837 1.24288 1.01368 1.20556 1.04432 0.94325 0.96520 0.94617 0.99297 0.95413 0.90239 0.91707 0.87976 0.91087 0.94200 0.94708 0.89369 0.88474 0.92814 0.93260 0.73868 0.77565 0.74443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.58 21.65 0.23 -57.93 16 2 C -0.07 -3.93 5.47 84.86 0.46 -3.47 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 7 C -0.23 -12.55 9.71 84.03 0.82 -11.73 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -30.81 3.13 -668.26 -2.09 -32.90 16 10 C 0.17 8.46 5.41 86.85 0.47 8.93 16 11 C -0.14 -4.70 7.08 31.99 0.23 -4.47 16 12 C -0.11 -3.09 5.71 31.78 0.18 -2.91 16 13 C 0.15 5.48 3.16 45.34 0.14 5.62 16 14 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.11 -3.77 4.72 30.59 0.14 -3.62 16 16 C -0.11 -2.12 5.10 30.59 0.16 -1.97 16 17 C 0.12 2.85 5.67 86.38 0.49 3.34 16 18 N -0.70 -11.65 5.51 -465.95 -2.57 -14.22 16 19 C 0.54 13.25 7.79 86.80 0.68 13.92 16 20 O -0.56 -20.44 16.27 -3.86 -0.06 -20.50 16 21 C -0.04 -0.75 5.92 -19.79 -0.12 -0.87 16 22 C -0.10 -0.52 9.61 22.65 0.22 -0.31 16 23 C 0.18 0.60 11.14 84.82 0.94 1.55 16 24 N -0.46 -5.26 10.35 -193.10 -2.00 -7.26 16 25 C 0.21 3.58 8.56 134.17 1.15 4.73 16 26 N -0.38 -5.87 7.06 -55.49 -0.39 -6.27 16 27 H 0.47 2.96 8.96 -219.84 -1.97 0.99 16 28 N -0.01 -0.34 13.29 37.02 0.49 0.15 16 29 N -0.27 -7.94 11.92 -51.94 -0.62 -8.56 16 30 C -0.03 -0.66 6.97 40.06 0.28 -0.38 16 31 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 32 H -0.01 -0.60 8.06 -2.38 -0.02 -0.62 16 33 H 0.03 1.54 6.93 -2.39 -0.02 1.53 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.90 7.76 -2.38 -0.02 1.88 16 38 H 0.04 1.45 8.02 -2.39 -0.02 1.43 16 39 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.42 7.65 -2.39 -0.02 1.40 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.42 2.70 6.62 -92.71 -0.61 2.08 16 45 H 0.21 -1.03 6.53 -2.91 -0.02 -1.05 16 46 H 0.24 -1.80 8.06 -2.91 -0.02 -1.82 16 Total: -1.00 -91.50 380.57 -0.29 -91.79 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -1.55 Total: -1.51 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.24 Total: 8.37 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -6.95 Total: -126.98 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.50 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -91.50 -0.29 -91.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714519534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.962 kcal (2) G-P(sol) polarization free energy of solvation -91.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds