Wall clock time and date at job start Wed Apr 1 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00076 * 2 1 4 4 H 1.48501 * 109.47063 * 240.00012 * 3 2 1 5 5 H 1.48502 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47334 * 119.99918 * 3 2 1 7 7 C 1.38814 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99444 * 163.08203 * 7 2 1 9 9 N 1.36934 * 120.00566 * 343.08432 * 7 2 1 10 10 C 1.46927 * 120.62871 * 331.84515 * 9 7 2 11 11 C 1.53195 * 108.77176 * 233.58814 * 10 9 7 12 12 C 1.53042 * 109.31475 * 305.36150 * 11 10 9 13 13 C 1.52997 * 109.45948 * 181.38808 * 12 11 10 14 14 C 1.53006 * 109.46690 * 174.97177 * 13 12 11 15 15 N 1.46503 * 109.46827 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99735 * 179.97438 * 15 14 13 17 17 O 1.21574 * 120.00272 * 0.02562 * 16 15 14 18 18 C 1.47694 * 119.99869 * 179.97438 * 16 15 14 19 19 C 1.41592 * 120.03120 * 0.02562 * 18 16 15 20 20 C 1.35782 * 119.54832 * 180.27129 * 19 18 16 21 21 C 1.40861 * 119.38712 * 359.51059 * 20 19 18 22 22 N 1.32490 * 133.41351 * 180.17350 * 21 20 19 23 23 N 1.28537 * 110.23971 * 180.28882 * 22 21 20 24 24 N 1.28984 * 110.84760 * 359.97438 * 23 22 21 25 25 N 1.36932 * 119.93574 * 0.48729 * 21 20 19 26 26 C 1.35501 * 120.83884 * 359.76251 * 25 21 20 27 27 C 1.53045 * 109.52462 * 61.37294 * 12 11 10 28 28 C 1.46926 * 120.63252 * 151.81928 * 9 7 2 29 29 H 0.96995 * 119.99726 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58698 * 113.80111 * 10 9 7 31 31 H 1.09002 * 109.70177 * 353.43954 * 10 9 7 32 32 H 1.09004 * 109.49277 * 185.41246 * 11 10 9 33 33 H 1.08998 * 109.52865 * 65.33126 * 11 10 9 34 34 H 1.09007 * 109.45717 * 301.36545 * 12 11 10 35 35 H 1.08996 * 109.47271 * 54.97964 * 13 12 11 36 36 H 1.08993 * 109.46939 * 294.97261 * 13 12 11 37 37 H 1.09001 * 109.47097 * 60.00397 * 14 13 12 38 38 H 1.08995 * 109.47422 * 300.00276 * 14 13 12 39 39 H 0.96996 * 120.00221 * 0.02562 * 15 14 13 40 40 H 1.08003 * 120.22737 * 359.97438 * 19 18 16 41 41 H 1.07997 * 120.31075 * 179.74678 * 20 19 18 42 42 H 1.08002 * 119.81793 * 179.97438 * 26 25 21 43 43 H 1.09000 * 109.49216 * 58.58251 * 27 12 11 44 44 H 1.08994 * 109.49605 * 178.67759 * 27 12 11 45 45 H 1.08991 * 109.58789 * 246.19778 * 28 9 7 46 46 H 1.09000 * 109.58812 * 6.48863 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2716 9 7 1.3700 -2.3623 0.3461 10 6 0.2259 -2.3400 1.2676 11 6 0.4972 -3.3191 2.4142 12 6 0.8117 -4.7008 1.8361 13 6 1.0492 -5.6896 2.9792 14 6 1.2396 -7.0954 2.4062 15 7 1.4677 -8.0422 3.5007 16 6 1.6619 -9.3485 3.2322 17 8 1.6483 -9.7413 2.0818 18 6 1.8924 -10.3028 4.3356 19 6 1.9089 -9.8461 5.6757 20 6 2.1272 -10.7311 6.6822 21 6 2.3233 -12.0918 6.3756 22 7 2.5494 -13.1682 7.1143 23 7 2.6678 -14.2054 6.3644 24 7 2.5313 -13.8908 5.1210 25 7 2.3026 -12.5084 5.0714 26 6 2.0902 -11.6273 4.0641 27 6 2.0673 -4.6171 0.9651 28 6 1.8137 -3.6529 -0.1981 29 1 -0.4849 0.8400 -0.0004 30 1 -0.6772 -2.6405 0.7364 31 1 0.0965 -1.3347 1.6686 32 1 -0.3835 -3.3840 3.0532 33 1 1.3466 -2.9679 3.0000 34 1 -0.0284 -5.0409 1.2304 35 1 0.1895 -5.6838 3.6492 36 1 1.9425 -5.3984 3.5317 37 1 2.0994 -7.1013 1.7362 38 1 0.3464 -7.3866 1.8536 39 1 1.4782 -7.7289 4.4186 40 1 1.7538 -8.8001 5.8956 41 1 2.1464 -10.3954 7.7085 42 1 2.0776 -11.9737 3.0412 43 1 2.9020 -4.2533 1.5642 44 1 2.3044 -5.6060 0.5726 45 1 1.0402 -4.0605 -0.8488 46 1 2.7332 -3.5131 -0.7665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715201382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:08 Heat of formation + Delta-G solvation = 103.400702 kcal Electronic energy + Delta-G solvation = -28513.006060 eV Core-core repulsion = 24440.132868 eV Total energy + Delta-G solvation = -4072.873192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.64232 -41.35679 -39.63799 -39.18157 -36.77334 -35.49941 -34.98286 -33.56930 -32.86374 -31.75522 -31.51955 -30.03550 -27.38506 -26.26211 -25.53601 -24.52166 -24.05108 -23.55540 -22.27613 -22.08563 -20.61700 -20.01806 -18.71158 -18.63284 -18.58491 -18.14300 -17.06399 -16.79411 -16.61890 -16.16277 -15.86600 -15.55065 -15.36437 -15.24740 -14.88546 -14.80421 -14.67919 -14.36071 -14.20469 -13.89439 -13.85415 -13.72542 -13.00075 -12.95778 -12.88591 -12.81760 -12.74081 -12.50136 -12.35396 -12.26229 -12.08923 -11.90805 -11.75724 -11.53800 -11.39253 -11.31422 -10.95069 -10.92489 -10.49426 -10.15859 -9.83163 -8.62811 -7.84640 -5.29833 -1.08902 -0.65514 0.39977 0.67949 1.47847 1.48186 1.49522 1.56716 1.94798 2.21628 2.47291 2.53278 2.91662 3.25811 3.29402 3.40640 3.66319 3.76252 3.79643 3.92607 4.00188 4.01955 4.19698 4.38302 4.41364 4.50288 4.61154 4.64289 4.65388 4.74195 4.81378 4.86075 4.96466 4.96770 5.06582 5.09195 5.10442 5.18150 5.34192 5.37881 5.43780 5.48563 5.54993 5.61141 5.71977 5.87433 6.40750 6.42564 7.05276 7.05662 7.18966 7.91917 8.42382 9.20834 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.036062 B = 0.001589 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.247371 B =17614.476181 C =17881.085362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.120 4.120 12 C -0.071 4.071 13 C -0.110 4.110 14 C 0.121 3.879 15 N -0.697 5.697 16 C 0.571 3.429 17 O -0.568 6.568 18 C -0.134 4.134 19 C -0.011 4.011 20 C -0.080 4.080 21 C 0.239 3.761 22 N -0.346 5.346 23 N -0.026 5.026 24 N -0.131 5.131 25 N -0.308 5.308 26 C 0.163 3.837 27 C -0.117 4.117 28 C 0.135 3.865 29 H 0.249 0.751 30 H -0.010 1.010 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.421 0.579 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.195 0.805 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -18.722 16.191 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.147 4.147 14 C -0.003 4.003 15 N -0.349 5.349 16 C 0.356 3.644 17 O -0.448 6.448 18 C -0.143 4.143 19 C -0.037 4.037 20 C -0.103 4.103 21 C -0.014 4.014 22 N -0.207 5.207 23 N -0.019 5.019 24 N -0.115 5.115 25 N -0.086 5.086 26 C 0.033 3.967 27 C -0.156 4.156 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.260 0.740 40 H 0.228 0.772 41 H 0.228 0.772 42 H 0.212 0.788 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.025 0.975 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.682 -20.489 15.640 25.916 hybrid contribution 0.011 1.770 -0.742 1.919 sum 2.694 -18.720 14.897 24.075 Atomic orbital electron populations 1.70184 1.06632 1.25806 1.55552 1.25781 0.96025 1.01431 1.01434 0.85374 0.77586 0.79363 0.78324 1.20391 1.22085 1.20230 1.19481 0.92748 0.86262 1.40849 0.91899 1.44335 1.36029 1.02207 1.50940 1.20634 0.87423 0.97881 0.89410 1.22011 1.00959 0.95311 0.97627 1.20893 0.97457 0.94371 0.96352 1.21721 1.04017 0.91268 0.97742 1.21470 1.01773 0.87877 0.89149 1.45679 1.71094 1.05982 1.12134 1.17656 0.76921 0.82727 0.87105 1.90875 1.52362 1.78826 1.22768 1.19644 1.06876 0.91607 0.96151 1.21941 0.90332 1.03353 0.88060 1.20891 1.00812 0.83829 1.04751 1.23798 0.98064 0.98689 0.80843 1.75087 1.25777 0.94230 1.25560 1.77866 1.07394 1.20684 0.95941 1.82826 1.28011 0.86320 1.14298 1.48793 1.43032 1.08299 1.08508 1.21902 0.93434 0.87520 0.93848 1.21980 0.97868 0.98625 0.97141 1.21101 0.96710 0.86435 0.94753 0.94190 0.99202 0.93283 0.91001 0.92761 0.92290 0.89154 0.89768 0.91551 0.91823 0.73964 0.77194 0.77151 0.78760 0.92351 0.90445 0.97516 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.71 11.19 21.65 0.24 -54.47 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 3 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.26 -14.27 9.58 84.03 0.81 -13.47 16 8 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 9 N -0.61 -29.78 2.99 -699.10 -2.09 -31.87 16 10 C 0.17 7.87 5.30 86.36 0.46 8.32 16 11 C -0.12 -3.77 5.36 30.67 0.16 -3.61 16 12 C -0.07 -1.77 2.15 -10.77 -0.02 -1.79 16 13 C -0.11 -1.49 4.80 30.60 0.15 -1.35 16 14 C 0.12 1.64 5.43 86.38 0.47 2.11 16 15 N -0.70 -5.33 5.51 -466.11 -2.57 -7.89 16 16 C 0.57 6.96 7.76 86.74 0.67 7.64 16 17 O -0.57 -12.41 16.28 -3.95 -0.06 -12.47 16 18 C -0.13 -1.00 5.84 -20.33 -0.12 -1.12 16 19 C -0.01 0.00 9.53 22.53 0.21 0.22 16 20 C -0.08 -0.26 10.09 22.34 0.23 -0.03 16 21 C 0.24 3.46 8.02 134.16 1.08 4.54 16 22 N -0.35 -7.34 12.26 -55.52 -0.68 -8.02 16 23 N -0.03 -0.64 13.35 37.02 0.49 -0.14 16 24 N -0.13 -3.03 13.99 37.02 0.52 -2.51 16 25 N -0.31 -5.19 3.92 -192.05 -0.75 -5.94 16 26 C 0.16 1.99 10.77 83.75 0.90 2.89 16 27 C -0.12 -3.32 5.15 30.68 0.16 -3.16 16 28 C 0.14 5.37 6.52 86.36 0.56 5.93 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 32 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.11 6.54 -2.39 -0.02 1.09 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.42 -0.31 6.51 -92.71 -0.60 -0.92 16 40 H 0.21 -2.01 6.44 -2.91 -0.02 -2.03 16 41 H 0.21 -0.80 8.06 -2.91 -0.02 -0.83 16 42 H 0.20 2.33 7.57 -2.91 -0.02 2.31 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.81 6.50 -2.39 -0.02 1.80 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 Total: -1.00 -80.23 376.71 3.68 -76.55 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 0.42 Total: -4.02 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.13 Total: 4.69 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.84 Total: -110.85 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.06 Total: -12.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -80.23 3.68 -76.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715201382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.955 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds