Wall clock time and date at job start Wed Apr 1 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48496 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47353 * 300.00061 * 3 2 1 6 6 H 1.48498 * 109.47088 * 60.00079 * 3 2 1 7 7 C 1.38813 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99451 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99879 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47341 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47007 * 295.00315 * 11 10 9 13 13 N 1.46498 * 109.47360 * 54.99710 * 11 10 9 14 14 C 1.34775 * 120.00467 * 244.86200 * 13 11 10 15 15 O 1.21567 * 119.99906 * 354.99016 * 14 13 11 16 16 C 1.47697 * 120.00132 * 174.99006 * 14 13 11 17 17 C 1.41598 * 120.03297 * 0.02562 * 16 14 13 18 18 C 1.35780 * 119.54762 * 179.97438 * 17 16 14 19 19 C 1.40849 * 119.39383 * 359.97438 * 18 17 16 20 20 N 1.32487 * 133.42303 * 179.97438 * 19 18 17 21 21 N 1.28526 * 110.24654 * 180.02562 * 20 19 18 22 22 N 1.28978 * 110.84742 * 0.02562 * 21 20 19 23 23 N 1.36938 * 119.93254 * 0.02562 * 19 18 17 24 24 C 1.35493 * 120.83857 * 359.97438 * 23 19 18 25 25 C 1.52995 * 109.47353 * 175.00239 * 11 10 9 26 26 C 1.54262 * 110.03324 * 297.08673 * 25 11 10 27 27 C 1.54960 * 104.16203 * 217.13585 * 26 25 11 28 28 C 1.54890 * 102.77652 * 37.88699 * 27 26 25 29 29 C 1.53876 * 110.03258 * 179.86915 * 25 11 10 30 30 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00704 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.46894 * 60.00526 * 10 9 7 33 33 H 1.08996 * 109.47284 * 300.00290 * 10 9 7 34 34 H 0.97001 * 119.99935 * 64.85743 * 13 11 10 35 35 H 1.08005 * 120.22450 * 359.94929 * 17 16 14 36 36 H 1.08001 * 120.29845 * 180.02562 * 18 17 16 37 37 H 1.08010 * 119.82138 * 180.02562 * 24 23 19 38 38 H 1.09002 * 110.01550 * 58.48028 * 25 11 10 39 39 H 1.09007 * 110.48664 * 335.78499 * 26 25 11 40 40 H 1.08997 * 110.48738 * 98.42491 * 26 25 11 41 41 H 1.08997 * 110.72340 * 279.57090 * 27 26 25 42 42 H 1.09005 * 110.76523 * 156.21768 * 27 26 25 43 43 H 1.09001 * 110.48797 * 203.40390 * 28 27 26 44 44 H 1.09004 * 110.60127 * 80.82103 * 28 27 26 45 45 H 1.09001 * 110.03533 * 238.56718 * 29 25 11 46 46 H 1.09005 * 110.03316 * 359.94842 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.4980 -4.8142 0.9296 13 7 0.1439 -4.6753 -1.1330 14 6 -1.1686 -4.4639 -0.9113 15 8 -1.6043 -4.4837 0.2234 16 6 -2.0775 -4.2082 -2.0470 17 6 -1.5709 -4.1856 -3.3691 18 6 -2.4154 -3.9501 -4.4059 19 6 -3.7829 -3.7327 -4.1479 20 7 -4.8276 -3.4838 -4.9237 21 7 -5.8903 -3.3578 -4.2118 22 7 -5.6242 -3.5100 -2.9590 23 7 -4.2481 -3.7597 -2.8603 24 6 -3.4083 -3.9944 -1.8232 25 6 1.8246 -6.1410 -0.1289 26 6 2.5723 -6.1930 -1.4772 27 6 2.4522 -7.6730 -1.9205 28 6 1.0170 -8.0486 -1.4753 29 6 0.8364 -7.3205 -0.1273 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8878 33 1 2.6841 -3.7141 -0.8921 34 1 0.4794 -4.7319 -2.0414 35 1 -0.5197 -4.3541 -3.5515 36 1 -2.0420 -3.9305 -5.4191 37 1 -3.7930 -4.0124 -0.8141 38 1 2.5315 -6.2451 0.6943 39 1 2.0937 -5.5371 -2.2044 40 1 3.6185 -5.9175 -1.3442 41 1 3.1898 -8.2903 -1.4077 42 1 2.5570 -7.7622 -3.0019 43 1 0.9290 -9.1267 -1.3414 44 1 0.2852 -7.6943 -2.2013 45 1 1.0642 -7.9975 0.6961 46 1 -0.1852 -6.9516 -0.0353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716820578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:50 Heat of formation + Delta-G solvation = 119.125450 kcal Electronic energy + Delta-G solvation = -30624.682761 eV Core-core repulsion = 26552.491445 eV Total energy + Delta-G solvation = -4072.191316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.56665 -40.52794 -38.96071 -37.79079 -35.38811 -34.44255 -33.62204 -32.48779 -31.18579 -30.71429 -29.80222 -28.82105 -26.50828 -25.60944 -24.59379 -23.43347 -22.99052 -21.74075 -21.57185 -20.37316 -19.46536 -19.06345 -17.69605 -17.56553 -17.23552 -17.03358 -16.11215 -15.81904 -15.39706 -15.23428 -14.77832 -14.58520 -14.34395 -13.84860 -13.72751 -13.53860 -13.44527 -13.35959 -13.02513 -12.85962 -12.69176 -12.20955 -12.03973 -11.85508 -11.83892 -11.27830 -11.24434 -11.18472 -11.13437 -10.90401 -10.79068 -10.71659 -10.60020 -10.49342 -10.32898 -10.10348 -10.03435 -9.79662 -8.96378 -8.93421 -8.79159 -6.99550 -5.82421 -3.12015 -0.04170 0.24221 1.42771 1.81130 2.51551 3.04552 3.33082 3.38410 3.43155 3.44047 3.46788 3.89836 4.17997 4.34174 4.43668 4.52937 4.56337 4.60187 4.66108 4.71745 5.08065 5.13578 5.29811 5.34507 5.36500 5.38598 5.48187 5.48413 5.49728 5.55119 5.57381 5.70816 5.72587 5.79060 5.83177 5.94148 6.00035 6.05540 6.11546 6.17169 6.22380 6.31344 6.36005 6.56014 6.76224 7.48704 7.63731 8.16680 8.18566 8.35177 9.47324 10.04037 10.38574 11.39594 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006695 B = 0.004741 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4181.485116 B = 5904.109217 C = 9083.491220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.141 3.859 11 C 0.138 3.862 12 H 0.104 0.896 13 N -0.695 5.695 14 C 0.577 3.423 15 O -0.524 6.524 16 C -0.139 4.139 17 C -0.026 4.026 18 C -0.097 4.097 19 C 0.252 3.748 20 N -0.327 5.327 21 N -0.008 5.008 22 N -0.105 5.105 23 N -0.303 5.303 24 C 0.179 3.821 25 C -0.098 4.098 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.030 0.970 33 H 0.025 0.975 34 H 0.397 0.603 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -17.536 -7.001 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.013 3.987 11 C 0.033 3.967 12 H 0.122 0.878 13 N -0.347 5.347 14 C 0.361 3.639 15 O -0.401 6.401 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.120 4.120 19 C -0.002 4.002 20 N -0.186 5.186 21 N -0.001 5.001 22 N -0.088 5.088 23 N -0.081 5.081 24 C 0.049 3.951 25 C -0.118 4.118 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.233 0.767 35 H 0.178 0.822 36 H 0.190 0.810 37 H 0.214 0.786 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.024 -17.092 -6.501 18.286 hybrid contribution 1.175 1.027 -0.017 1.561 sum 1.200 -16.064 -6.517 17.377 Atomic orbital electron populations 1.69681 1.05089 1.25531 1.57446 1.24739 0.95468 0.97660 1.02873 0.86157 0.78778 0.84239 0.77231 1.20546 1.21918 1.21852 1.19229 0.90985 0.84077 1.42998 0.91160 1.42301 1.05950 0.99683 1.89472 1.21059 0.93197 0.85776 0.98700 1.21468 0.90762 0.94170 0.90260 0.87762 1.45638 1.06466 1.72073 1.10492 1.17339 0.82342 0.76992 0.87221 1.90842 1.76030 1.50817 1.22418 1.19759 0.92686 1.06843 0.95554 1.21450 1.01183 0.92359 0.90277 1.20268 0.86419 1.02911 1.02356 1.23093 0.97436 0.98125 0.81586 1.75151 0.93690 1.24897 1.24893 1.77852 1.19070 1.06838 0.96315 1.82869 0.85995 1.26369 1.13542 1.48765 1.08876 1.42565 1.07874 1.21742 0.88059 0.92298 0.92974 1.22100 0.97049 0.93953 0.98703 1.22437 1.00569 0.96160 0.96431 1.22519 0.96827 0.96493 1.00400 1.22333 0.96879 0.99631 0.97155 1.22170 0.99867 0.96408 0.97251 0.93585 0.78080 0.95256 0.95745 0.76667 0.82240 0.81013 0.78634 0.89652 0.91690 0.91195 0.91648 0.91824 0.92176 0.91974 0.92052 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.73 -17.09 5.43 -59.91 -0.33 -17.41 16 10 C 0.14 2.45 5.84 -4.04 -0.02 2.43 16 11 C 0.14 1.87 2.04 -67.93 -0.14 1.73 16 12 H 0.10 1.69 6.91 -51.92 -0.36 1.33 16 13 N -0.70 -8.53 3.70 -54.80 -0.20 -8.73 16 14 C 0.58 8.14 6.87 -12.40 -0.09 8.05 16 15 O -0.52 -9.23 15.62 5.31 0.08 -9.14 16 16 C -0.14 -1.67 5.84 -105.33 -0.62 -2.28 16 17 C -0.03 -0.24 9.53 -39.18 -0.37 -0.61 16 18 C -0.10 -0.91 10.09 -39.47 -0.40 -1.30 16 19 C 0.25 3.34 8.02 -156.27 -1.25 2.09 16 20 N -0.33 -4.98 12.26 31.10 0.38 -4.59 16 21 N -0.01 -0.12 13.35 60.35 0.81 0.68 16 22 N -0.10 -1.65 13.99 60.35 0.84 -0.81 16 23 N -0.30 -4.26 3.92 -12.06 -0.05 -4.31 16 24 C 0.18 2.30 10.77 -16.51 -0.18 2.12 16 25 C -0.10 -0.99 2.81 -89.51 -0.25 -1.24 16 26 C -0.12 -1.02 5.13 -25.04 -0.13 -1.15 16 27 C -0.12 -0.92 6.91 -24.70 -0.17 -1.09 16 28 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 29 C -0.12 -1.12 6.19 -25.61 -0.16 -1.28 16 30 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 31 H 0.39 9.73 6.80 -40.82 -0.28 9.45 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 34 H 0.40 3.84 5.01 -40.82 -0.20 3.63 16 35 H 0.16 0.94 6.46 -52.48 -0.34 0.60 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.20 2.38 7.57 -52.48 -0.40 1.98 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.55 5.96 -51.92 -0.31 0.24 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -33.93 376.86 -7.25 -41.18 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.98 Total: 8.02 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -4.19 Total: -0.64 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 2.18 Total: -61.98 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.93 -7.25 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716820578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.306 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds