Wall clock time and date at job start Wed Apr 1 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48496 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47353 * 300.00061 * 3 2 1 6 6 H 1.48498 * 109.47088 * 60.00079 * 3 2 1 7 7 C 1.38813 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99451 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99879 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47341 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47007 * 295.00315 * 11 10 9 13 13 N 1.46498 * 109.47360 * 54.99710 * 11 10 9 14 14 C 1.34775 * 120.00467 * 244.86200 * 13 11 10 15 15 O 1.21567 * 119.99906 * 354.99016 * 14 13 11 16 16 C 1.47697 * 120.00132 * 174.99006 * 14 13 11 17 17 C 1.41598 * 120.03297 * 0.02562 * 16 14 13 18 18 C 1.35780 * 119.54762 * 179.97438 * 17 16 14 19 19 C 1.40849 * 119.39383 * 359.97438 * 18 17 16 20 20 N 1.32487 * 133.42303 * 179.97438 * 19 18 17 21 21 N 1.28526 * 110.24654 * 180.02562 * 20 19 18 22 22 N 1.28978 * 110.84742 * 0.02562 * 21 20 19 23 23 N 1.36938 * 119.93254 * 0.02562 * 19 18 17 24 24 C 1.35493 * 120.83857 * 359.97438 * 23 19 18 25 25 C 1.52995 * 109.47353 * 175.00239 * 11 10 9 26 26 C 1.54262 * 110.03324 * 297.08673 * 25 11 10 27 27 C 1.54960 * 104.16203 * 217.13585 * 26 25 11 28 28 C 1.54890 * 102.77652 * 37.88699 * 27 26 25 29 29 C 1.53876 * 110.03258 * 179.86915 * 25 11 10 30 30 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00704 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.46894 * 60.00526 * 10 9 7 33 33 H 1.08996 * 109.47284 * 300.00290 * 10 9 7 34 34 H 0.97001 * 119.99935 * 64.85743 * 13 11 10 35 35 H 1.08005 * 120.22450 * 359.94929 * 17 16 14 36 36 H 1.08001 * 120.29845 * 180.02562 * 18 17 16 37 37 H 1.08010 * 119.82138 * 180.02562 * 24 23 19 38 38 H 1.09002 * 110.01550 * 58.48028 * 25 11 10 39 39 H 1.09007 * 110.48664 * 335.78499 * 26 25 11 40 40 H 1.08997 * 110.48738 * 98.42491 * 26 25 11 41 41 H 1.08997 * 110.72340 * 279.57090 * 27 26 25 42 42 H 1.09005 * 110.76523 * 156.21768 * 27 26 25 43 43 H 1.09001 * 110.48797 * 203.40390 * 28 27 26 44 44 H 1.09004 * 110.60127 * 80.82103 * 28 27 26 45 45 H 1.09001 * 110.03533 * 238.56718 * 29 25 11 46 46 H 1.09005 * 110.03316 * 359.94842 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.4980 -4.8142 0.9296 13 7 0.1439 -4.6753 -1.1330 14 6 -1.1686 -4.4639 -0.9113 15 8 -1.6043 -4.4837 0.2234 16 6 -2.0775 -4.2082 -2.0470 17 6 -1.5709 -4.1856 -3.3691 18 6 -2.4154 -3.9501 -4.4059 19 6 -3.7829 -3.7327 -4.1479 20 7 -4.8276 -3.4838 -4.9237 21 7 -5.8903 -3.3578 -4.2118 22 7 -5.6242 -3.5100 -2.9590 23 7 -4.2481 -3.7597 -2.8603 24 6 -3.4083 -3.9944 -1.8232 25 6 1.8246 -6.1410 -0.1289 26 6 2.5723 -6.1930 -1.4772 27 6 2.4522 -7.6730 -1.9205 28 6 1.0170 -8.0486 -1.4753 29 6 0.8364 -7.3205 -0.1273 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6854 -3.7149 0.8878 33 1 2.6841 -3.7141 -0.8921 34 1 0.4794 -4.7319 -2.0414 35 1 -0.5197 -4.3541 -3.5515 36 1 -2.0420 -3.9305 -5.4191 37 1 -3.7930 -4.0124 -0.8141 38 1 2.5315 -6.2451 0.6943 39 1 2.0937 -5.5371 -2.2044 40 1 3.6185 -5.9175 -1.3442 41 1 3.1898 -8.2903 -1.4077 42 1 2.5570 -7.7622 -3.0019 43 1 0.9290 -9.1267 -1.3414 44 1 0.2852 -7.6943 -2.2013 45 1 1.0642 -7.9975 0.6961 46 1 -0.1852 -6.9516 -0.0353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716820578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:49 Heat of formation + Delta-G solvation = 96.691582 kcal Electronic energy + Delta-G solvation = -30625.655567 eV Core-core repulsion = 26552.491445 eV Total energy + Delta-G solvation = -4073.164121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.63659 -41.61789 -39.90916 -38.80649 -36.75605 -35.55582 -35.01852 -33.67513 -32.75804 -31.75092 -31.00425 -29.51915 -27.76574 -26.82017 -25.56296 -25.03887 -24.07728 -23.04499 -22.55635 -21.16542 -20.39814 -20.10284 -19.20203 -18.65425 -18.49556 -18.13106 -17.22269 -16.78109 -16.66095 -16.20754 -16.07054 -15.80869 -15.41182 -15.12948 -14.98285 -14.85699 -14.67138 -14.24291 -14.08565 -13.95720 -13.80913 -13.61262 -13.09421 -12.96925 -12.92877 -12.81359 -12.78930 -12.36792 -12.10979 -11.96594 -11.83601 -11.77420 -11.63750 -11.49433 -11.42225 -11.37018 -11.32654 -11.18911 -10.91256 -10.05945 -9.81505 -8.95352 -7.92563 -5.20143 -1.07038 -0.66823 0.39037 0.69257 1.46977 1.48747 1.49880 1.57647 1.98315 2.29073 2.46247 2.56877 2.92439 3.27344 3.40715 3.43228 3.60568 3.65250 3.79110 3.81982 3.89344 4.01266 4.22311 4.31972 4.39688 4.45455 4.57649 4.61920 4.63886 4.69109 4.76331 4.85593 4.92420 4.95498 4.96973 4.98024 5.05305 5.15122 5.21796 5.23125 5.39344 5.44441 5.50935 5.55518 5.61723 5.62409 6.28032 6.44201 7.04787 7.11787 7.36533 8.14394 8.35345 9.30150 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006695 B = 0.004741 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4181.485116 B = 5904.109217 C = 9083.491220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.302 1.302 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.139 3.861 11 C 0.149 3.851 12 H 0.073 0.927 13 N -0.681 5.681 14 C 0.573 3.427 15 O -0.566 6.566 16 C -0.133 4.133 17 C -0.015 4.015 18 C -0.079 4.079 19 C 0.240 3.760 20 N -0.342 5.342 21 N -0.024 5.024 22 N -0.131 5.131 23 N -0.305 5.305 24 C 0.161 3.839 25 C -0.091 4.091 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.118 4.118 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.413 0.587 35 H 0.201 0.799 36 H 0.215 0.785 37 H 0.191 0.809 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -18.960 -8.996 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.795 3.205 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.230 1.230 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.012 3.988 11 C 0.044 3.956 12 H 0.092 0.908 13 N -0.333 5.333 14 C 0.359 3.641 15 O -0.446 6.446 16 C -0.142 4.142 17 C -0.041 4.041 18 C -0.101 4.101 19 C -0.013 4.013 20 N -0.202 5.202 21 N -0.017 5.017 22 N -0.115 5.115 23 N -0.083 5.083 24 C 0.031 3.969 25 C -0.110 4.110 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.157 4.157 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.252 0.748 35 H 0.218 0.782 36 H 0.232 0.768 37 H 0.208 0.792 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.227 -18.563 -8.522 20.679 hybrid contribution 0.340 1.375 0.683 1.572 sum 3.567 -17.189 -7.839 19.225 Atomic orbital electron populations 1.69842 1.06603 1.25485 1.59998 1.25461 0.96141 1.00805 1.04223 0.85187 0.78579 0.80440 0.76260 1.18617 1.22352 1.23012 1.19649 0.91538 0.85165 1.40200 0.90254 1.42530 1.05671 1.01031 1.89274 1.21281 0.93802 0.84499 0.99255 1.21232 0.89995 0.94766 0.89596 0.90829 1.45491 1.05694 1.71050 1.11063 1.17635 0.82985 0.76322 0.87149 1.90827 1.76824 1.52637 1.24310 1.19726 0.91795 1.06243 0.96393 1.21851 1.02987 0.90878 0.88347 1.20839 0.84244 1.00681 1.04373 1.23716 0.98580 0.98042 0.80925 1.75052 0.94049 1.25652 1.25482 1.77805 1.19834 1.07482 0.96582 1.82800 0.87272 1.27834 1.13563 1.48707 1.08473 1.42611 1.08498 1.21777 0.88603 0.93685 0.92832 1.22048 0.96941 0.91827 1.00225 1.22463 1.00425 0.97490 0.95212 1.22481 0.96312 0.95246 1.01401 1.22331 0.97540 0.99854 0.95975 1.22131 0.98369 0.96268 0.98778 0.94547 0.79476 0.95474 0.93513 0.74783 0.78199 0.76820 0.79169 0.89328 0.91120 0.90875 0.91278 0.90249 0.91471 0.91411 0.91751 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.23 -12.15 9.99 84.04 0.84 -11.31 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -34.22 5.43 -343.47 -1.87 -36.09 16 10 C 0.14 4.57 5.84 86.38 0.50 5.08 16 11 C 0.15 3.90 2.04 44.99 0.09 3.99 16 12 H 0.07 2.44 6.91 -2.38 -0.02 2.42 16 13 N -0.68 -15.58 3.70 -445.55 -1.65 -17.23 16 14 C 0.57 16.04 6.87 86.74 0.60 16.64 16 15 O -0.57 -20.76 15.62 -3.93 -0.06 -20.82 16 16 C -0.13 -3.06 5.84 -20.32 -0.12 -3.18 16 17 C -0.01 -0.22 9.53 22.53 0.21 0.00 16 18 C -0.08 -1.22 10.09 22.34 0.23 -0.99 16 19 C 0.24 6.12 8.02 134.15 1.08 7.20 16 20 N -0.34 -10.32 12.26 -55.52 -0.68 -11.00 16 21 N -0.02 -0.80 13.35 37.02 0.49 -0.30 16 22 N -0.13 -4.33 13.99 37.02 0.52 -3.81 16 23 N -0.31 -8.75 3.92 -192.06 -0.75 -9.50 16 24 C 0.16 4.26 10.77 83.75 0.90 5.16 16 25 C -0.09 -1.63 2.81 -10.07 -0.03 -1.66 16 26 C -0.12 -1.60 5.13 31.69 0.16 -1.43 16 27 C -0.12 -1.24 6.91 31.91 0.22 -1.02 16 28 C -0.12 -1.47 6.83 31.67 0.22 -1.26 16 29 C -0.12 -2.00 6.19 31.32 0.19 -1.80 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.37 18.96 6.80 -92.70 -0.63 18.33 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 1.38 7.13 -2.39 -0.02 1.37 16 34 H 0.41 6.56 5.01 -92.71 -0.46 6.10 16 35 H 0.20 1.28 6.46 -2.91 -0.02 1.27 16 36 H 0.22 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.19 5.07 7.57 -2.91 -0.02 5.05 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 0.87 5.96 -2.38 -0.01 0.86 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 1.01 7.12 -2.38 -0.02 1.00 16 Total: -1.00 -76.36 376.86 3.82 -72.53 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.05 Total: 25.43 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.56 Total: 11.78 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -3.65 Total: -135.84 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.36 3.82 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716820578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.226 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds