Wall clock time and date at job start Wed Apr 1 2020 03:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46908 * 2 1 4 4 F 1.39895 * 109.46963 * 239.99345 * 2 1 3 5 5 C 1.53005 * 109.46701 * 119.99480 * 2 1 3 6 6 C 1.53001 * 109.46642 * 184.99846 * 5 2 1 7 7 N 1.46900 * 109.46818 * 180.02562 * 6 5 2 8 8 C 1.47949 * 110.99959 * 169.41718 * 7 6 5 9 9 C 1.55526 * 104.64831 * 146.70496 * 8 7 6 10 10 H 1.08994 * 113.14123 * 202.00241 * 9 8 7 11 11 C 1.52947 * 107.03024 * 77.82824 * 9 8 7 12 12 C 1.52755 * 110.75120 * 195.05985 * 11 9 8 13 13 C 1.53453 * 108.48636 * 63.65049 * 12 11 9 14 14 N 1.46805 * 107.67555 * 302.09287 * 13 12 11 15 15 C 1.34777 * 119.62051 * 232.18507 * 14 13 12 16 16 O 1.21277 * 119.99858 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.99960 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47208 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00301 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00407 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99763 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47318 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47312 * 119.99817 * 23 21 19 26 26 H 1.48503 * 109.46792 * 239.99433 * 23 21 19 27 27 C 1.45178 * 120.75564 * 52.19769 * 14 13 12 28 28 H 1.09008 * 109.70477 * 192.17753 * 27 14 13 29 29 C 1.47702 * 111.00273 * 290.12728 * 7 6 5 30 30 H 1.08997 * 109.46849 * 300.00445 * 1 2 3 31 31 H 1.08999 * 109.46886 * 60.00136 * 1 2 3 32 32 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46796 * 65.00502 * 5 2 1 34 34 H 1.09000 * 109.47536 * 304.99997 * 5 2 1 35 35 H 1.09001 * 109.47421 * 60.00477 * 6 5 2 36 36 H 1.08996 * 109.47735 * 300.00199 * 6 5 2 37 37 H 1.08999 * 110.40149 * 27.91715 * 8 7 6 38 38 H 1.09002 * 110.40342 * 265.49377 * 8 7 6 39 39 H 1.08994 * 109.22148 * 315.39218 * 11 9 8 40 40 H 1.09001 * 109.21722 * 74.73510 * 11 9 8 41 41 H 1.09002 * 109.63373 * 183.34953 * 12 11 9 42 42 H 1.08996 * 109.63844 * 303.75075 * 12 11 9 43 43 H 1.08992 * 109.81616 * 61.64111 * 13 12 11 44 44 H 1.09004 * 109.81377 * 182.55184 * 13 12 11 45 45 H 1.09001 * 109.47550 * 299.99445 * 17 15 14 46 46 H 1.08998 * 109.47250 * 59.99479 * 17 15 14 47 47 H 0.97003 * 119.99727 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.99708 * 117.48085 * 29 7 6 49 49 H 1.09000 * 109.99286 * 356.14881 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2494 6 6 3.5648 -0.6132 1.3138 7 7 4.0545 -1.3061 2.5130 8 6 5.5273 -1.4434 2.4818 9 6 5.9630 -1.3453 3.9715 10 1 7.0051 -1.0503 4.0945 11 6 5.6646 -2.7000 4.6156 12 6 5.7060 -2.5959 6.1391 13 6 4.5886 -1.6468 6.5924 14 7 4.8073 -0.3536 5.9331 15 6 4.8462 0.7728 6.6721 16 8 5.0260 1.8449 6.1345 17 6 4.6661 0.7001 8.1666 18 16 4.7693 2.3652 8.8685 19 6 4.5326 1.9934 10.5744 20 1 4.3834 0.9709 10.8886 21 6 4.5369 3.0146 11.5144 22 7 4.7183 4.2608 11.1315 23 14 4.2868 2.6203 13.3231 24 1 4.1066 1.1558 13.4902 25 1 5.4746 3.0646 14.0956 26 1 3.0796 3.3272 13.8214 27 6 4.9820 -0.2741 4.4940 28 1 5.3422 0.7181 4.2218 29 6 3.6789 -0.5725 3.7387 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2616 2.1371 35 1 3.8532 0.4370 1.3574 36 1 3.9995 -1.0728 0.4262 37 1 5.9720 -0.6347 1.9019 38 1 5.8101 -2.4105 2.0661 39 1 4.6746 -3.0345 4.3055 40 1 6.4076 -3.4259 4.2853 41 1 5.5500 -3.5814 6.5779 42 1 6.6733 -2.2040 6.4533 43 1 3.6194 -2.0512 6.3007 44 1 4.6269 -1.5212 7.6745 45 1 3.6912 0.2691 8.3946 46 1 5.4490 0.0756 8.5969 47 1 4.7217 4.9745 11.7885 48 1 3.0234 -1.1876 4.3551 49 1 3.1782 0.3595 3.4765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717040094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:07 Heat of formation + Delta-G solvation = -91.003297 kcal Electronic energy + Delta-G solvation = -28434.323672 eV Core-core repulsion = 24436.251729 eV Total energy + Delta-G solvation = -3998.071943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.91181 -40.88968 -38.63705 -36.52031 -34.50376 -32.95470 -32.44736 -31.63722 -29.78043 -28.60097 -27.83860 -25.52924 -25.32612 -23.64948 -22.55121 -21.62530 -20.91563 -20.55331 -18.55370 -17.71344 -17.00050 -16.91643 -16.55734 -15.90346 -15.47239 -15.20159 -15.14044 -15.08819 -14.82353 -14.36325 -14.07827 -14.04662 -13.65638 -13.46537 -13.20042 -13.07282 -12.90477 -12.79142 -12.62722 -12.58310 -12.45294 -12.04074 -11.94227 -11.68121 -11.51066 -11.25411 -11.10318 -11.09010 -11.03770 -11.02996 -10.91407 -10.77056 -10.63279 -10.47894 -9.81255 -9.38259 -9.09411 -8.76045 -8.38582 -8.24324 -6.52528 -6.23805 -3.94465 2.87800 2.98617 3.19970 3.23980 3.29373 3.51613 3.62480 4.18009 4.19396 4.33996 4.37355 4.44690 4.49586 4.57968 4.60886 4.78495 4.87126 4.90394 4.95146 5.01673 5.09014 5.11572 5.18240 5.22403 5.23053 5.32632 5.41360 5.44897 5.46431 5.53806 5.58093 5.60708 5.64735 5.71881 5.77661 5.80691 5.83718 5.84950 5.88416 5.92509 6.04441 6.09208 6.24207 6.59446 6.74611 6.76341 7.51123 7.58013 8.33362 8.51990 9.21720 10.83676 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.002324 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.700241 B =12042.820508 C =13152.535566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.082 0.918 4 F -0.216 7.216 5 C -0.142 4.142 6 C 0.048 3.952 7 N -0.522 5.522 8 C 0.046 3.954 9 C -0.105 4.105 10 H 0.092 0.908 11 C -0.108 4.108 12 C -0.136 4.136 13 C 0.107 3.893 14 N -0.605 5.605 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.129 3.871 28 H 0.100 0.900 29 C 0.032 3.968 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.268 0.732 48 H 0.081 0.919 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 -15.564 -19.789 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.100 0.900 4 F -0.197 7.197 5 C -0.180 4.180 6 C -0.080 4.080 7 N -0.246 5.246 8 C -0.082 4.082 9 C -0.125 4.125 10 H 0.110 0.890 11 C -0.146 4.146 12 C -0.174 4.174 13 C -0.016 4.016 14 N -0.340 5.340 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C 0.023 3.977 28 H 0.118 0.882 29 C -0.097 4.097 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.074 -14.289 -20.555 25.221 hybrid contribution -0.018 -0.706 1.725 1.864 sum -3.092 -14.995 -18.830 24.269 Atomic orbital electron populations 1.22366 0.94179 1.03644 1.03530 1.21572 0.94935 0.96244 0.82166 0.90016 1.92810 1.90294 1.83407 1.53164 1.22199 0.95887 1.02622 0.97288 1.22286 0.95104 0.96941 0.93693 1.63712 1.11321 1.48004 1.01602 1.23192 0.87318 1.01658 0.96002 1.22597 0.99481 0.95948 0.94453 0.88975 1.21446 1.02804 0.95674 0.94676 1.21904 0.99483 0.99604 0.96387 1.21830 0.98324 0.83072 0.98391 1.47496 1.73444 1.07187 1.05839 1.20425 0.75235 0.83144 0.89070 1.90683 1.47252 1.28070 1.73144 1.23554 1.04621 1.08230 0.93610 1.85407 1.94596 0.99542 1.04026 1.22890 1.57193 0.96239 0.91871 0.90882 1.24998 0.94614 0.94443 0.99569 1.70031 1.46391 0.99214 1.34648 0.86116 0.78012 0.78549 0.82816 1.19599 1.20561 1.20562 1.21486 0.94783 1.00559 0.80886 0.88245 1.23103 0.97645 0.97503 0.91440 0.90543 0.91463 0.91348 0.89836 0.90001 0.94277 0.90277 0.93336 0.89698 0.90546 0.91953 0.90673 0.91326 0.91365 0.88996 0.89212 0.89193 0.92236 0.90031 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.65 37.16 0.36 -0.74 16 2 C 0.09 0.65 3.96 -26.73 -0.11 0.54 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 F -0.22 -2.11 16.76 2.25 0.04 -2.07 16 5 C -0.14 -1.10 5.01 -26.73 -0.13 -1.23 16 6 C 0.05 0.42 4.46 -3.82 -0.02 0.40 16 7 N -0.52 -4.91 4.77 -231.03 -1.10 -6.02 16 8 C 0.05 0.40 5.97 -1.90 -0.01 0.39 16 9 C -0.11 -1.03 3.70 -88.59 -0.33 -1.36 16 10 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -0.94 4.82 -26.88 -0.13 -1.06 16 12 C -0.14 -1.23 6.11 -26.62 -0.16 -1.39 16 13 C 0.11 1.16 6.07 -3.64 -0.02 1.14 16 14 N -0.60 -8.44 2.72 -165.41 -0.45 -8.89 16 15 C 0.53 9.99 7.68 -10.99 -0.08 9.91 16 16 O -0.52 -11.67 15.18 5.56 0.08 -11.59 16 17 C -0.15 -3.00 4.47 36.00 0.16 -2.83 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.13 1.60 2.92 -67.64 -0.20 1.40 16 28 H 0.10 1.49 6.95 -51.92 -0.36 1.13 16 29 C 0.03 0.35 5.39 -3.10 -0.02 0.33 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.63 7.15 -51.93 -0.37 0.26 16 35 H 0.04 0.35 7.97 -51.93 -0.41 -0.06 16 36 H 0.08 0.68 7.87 -51.93 -0.41 0.28 16 37 H 0.05 0.42 7.82 -51.93 -0.41 0.01 16 38 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 39 H 0.08 0.70 7.27 -51.93 -0.38 0.32 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 44 H 0.09 1.02 5.82 -51.93 -0.30 0.72 16 45 H 0.09 1.66 7.93 -51.92 -0.41 1.25 16 46 H 0.09 1.67 7.62 -51.92 -0.40 1.27 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 48 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 49 H 0.06 0.70 6.93 -51.93 -0.36 0.34 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -33.18 394.79 -10.81 -44.00 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.34 Total: -1.12 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.49 Total: -7.29 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.82 Total: -40.20 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.18 -10.81 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717040094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.008 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds