Wall clock time and date at job start Wed Apr 1 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46908 * 2 1 4 4 F 1.39895 * 109.46963 * 239.99345 * 2 1 3 5 5 C 1.53005 * 109.46701 * 119.99480 * 2 1 3 6 6 C 1.53001 * 109.46642 * 184.99846 * 5 2 1 7 7 N 1.46900 * 109.46818 * 180.02562 * 6 5 2 8 8 C 1.47949 * 110.99959 * 169.41718 * 7 6 5 9 9 C 1.55526 * 104.64831 * 146.70496 * 8 7 6 10 10 H 1.08994 * 113.14123 * 202.00241 * 9 8 7 11 11 C 1.52947 * 107.03024 * 77.82824 * 9 8 7 12 12 C 1.52755 * 110.75120 * 195.05985 * 11 9 8 13 13 C 1.53453 * 108.48636 * 63.65049 * 12 11 9 14 14 N 1.46805 * 107.67555 * 302.09287 * 13 12 11 15 15 C 1.34777 * 119.62051 * 232.18507 * 14 13 12 16 16 O 1.21277 * 119.99858 * 180.02562 * 15 14 13 17 17 C 1.50698 * 119.99960 * 0.02562 * 15 14 13 18 18 S 1.80997 * 109.47208 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00301 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00028 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00407 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99763 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47318 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47312 * 119.99817 * 23 21 19 26 26 H 1.48503 * 109.46792 * 239.99433 * 23 21 19 27 27 C 1.45178 * 120.75564 * 52.19769 * 14 13 12 28 28 H 1.09008 * 109.70477 * 192.17753 * 27 14 13 29 29 C 1.47702 * 111.00273 * 290.12728 * 7 6 5 30 30 H 1.08997 * 109.46849 * 300.00445 * 1 2 3 31 31 H 1.08999 * 109.46886 * 60.00136 * 1 2 3 32 32 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46796 * 65.00502 * 5 2 1 34 34 H 1.09000 * 109.47536 * 304.99997 * 5 2 1 35 35 H 1.09001 * 109.47421 * 60.00477 * 6 5 2 36 36 H 1.08996 * 109.47735 * 300.00199 * 6 5 2 37 37 H 1.08999 * 110.40149 * 27.91715 * 8 7 6 38 38 H 1.09002 * 110.40342 * 265.49377 * 8 7 6 39 39 H 1.08994 * 109.22148 * 315.39218 * 11 9 8 40 40 H 1.09001 * 109.21722 * 74.73510 * 11 9 8 41 41 H 1.09002 * 109.63373 * 183.34953 * 12 11 9 42 42 H 1.08996 * 109.63844 * 303.75075 * 12 11 9 43 43 H 1.08992 * 109.81616 * 61.64111 * 13 12 11 44 44 H 1.09004 * 109.81377 * 182.55184 * 13 12 11 45 45 H 1.09001 * 109.47550 * 299.99445 * 17 15 14 46 46 H 1.08998 * 109.47250 * 59.99479 * 17 15 14 47 47 H 0.97003 * 119.99727 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.99708 * 117.48085 * 29 7 6 49 49 H 1.09000 * 109.99286 * 356.14881 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2494 6 6 3.5648 -0.6132 1.3138 7 7 4.0545 -1.3061 2.5130 8 6 5.5273 -1.4434 2.4818 9 6 5.9630 -1.3453 3.9715 10 1 7.0051 -1.0503 4.0945 11 6 5.6646 -2.7000 4.6156 12 6 5.7060 -2.5959 6.1391 13 6 4.5886 -1.6468 6.5924 14 7 4.8073 -0.3536 5.9331 15 6 4.8462 0.7728 6.6721 16 8 5.0260 1.8449 6.1345 17 6 4.6661 0.7001 8.1666 18 16 4.7693 2.3652 8.8685 19 6 4.5326 1.9934 10.5744 20 1 4.3834 0.9709 10.8886 21 6 4.5369 3.0146 11.5144 22 7 4.7183 4.2608 11.1315 23 14 4.2868 2.6203 13.3231 24 1 4.1066 1.1558 13.4902 25 1 5.4746 3.0646 14.0956 26 1 3.0796 3.3272 13.8214 27 6 4.9820 -0.2741 4.4940 28 1 5.3422 0.7181 4.2218 29 6 3.6789 -0.5725 3.7387 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2616 2.1371 35 1 3.8532 0.4370 1.3574 36 1 3.9995 -1.0728 0.4262 37 1 5.9720 -0.6347 1.9019 38 1 5.8101 -2.4105 2.0661 39 1 4.6746 -3.0345 4.3055 40 1 6.4076 -3.4259 4.2853 41 1 5.5500 -3.5814 6.5779 42 1 6.6733 -2.2040 6.4533 43 1 3.6194 -2.0512 6.3007 44 1 4.6269 -1.5212 7.6745 45 1 3.6912 0.2691 8.3946 46 1 5.4490 0.0756 8.5969 47 1 4.7217 4.9745 11.7885 48 1 3.0234 -1.1876 4.3551 49 1 3.1782 0.3595 3.4765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717040094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:06 Heat of formation + Delta-G solvation = -111.204531 kcal Electronic energy + Delta-G solvation = -28435.199664 eV Core-core repulsion = 24436.251729 eV Total energy + Delta-G solvation = -3998.947935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.60169 -41.92823 -39.86413 -37.50594 -35.29515 -34.59255 -33.88681 -32.48125 -31.06891 -29.34656 -28.90148 -27.65942 -26.20259 -24.47581 -23.36457 -22.38557 -21.73423 -21.56988 -19.96161 -19.28683 -18.33406 -17.62379 -17.48273 -16.90294 -16.85632 -16.58514 -16.30311 -16.10677 -15.85196 -15.63161 -15.23088 -14.99364 -14.68034 -14.52900 -14.45918 -14.00602 -13.92480 -13.67639 -13.57259 -13.50915 -13.33502 -13.15516 -13.10592 -12.92158 -12.72778 -12.63539 -12.50914 -12.34311 -11.96213 -11.81644 -11.76173 -11.69444 -11.61528 -11.40448 -11.28072 -11.16532 -10.87806 -10.26588 -9.77356 -9.32730 -8.68561 -8.35467 -6.13875 1.24137 1.41234 1.45028 1.51068 1.56797 2.03896 2.26368 2.82844 2.98949 3.22028 3.39989 3.60206 3.65354 3.72728 3.78517 3.84753 3.88229 3.97861 4.01287 4.06247 4.19081 4.23342 4.27213 4.29663 4.40032 4.43237 4.47293 4.56142 4.59333 4.67109 4.73725 4.77806 4.81020 4.85439 4.96649 4.99748 5.08146 5.12185 5.15689 5.19368 5.23665 5.26039 5.41587 5.49828 5.60044 5.84124 5.98656 6.19376 6.24996 7.05984 7.10288 8.74050 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.002324 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.700241 B =12042.820508 C =13152.535566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.088 0.912 4 F -0.229 7.229 5 C -0.135 4.135 6 C 0.048 3.952 7 N -0.517 5.517 8 C 0.049 3.951 9 C -0.100 4.100 10 H 0.089 0.911 11 C -0.102 4.102 12 C -0.130 4.130 13 C 0.097 3.903 14 N -0.589 5.589 15 C 0.531 3.469 16 O -0.567 6.567 17 C -0.121 4.121 18 S -0.154 6.154 19 C -0.542 4.542 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.122 3.878 28 H 0.066 0.934 29 C 0.042 3.958 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.271 0.729 48 H 0.086 0.914 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -18.811 -19.497 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.047 3.953 3 H 0.106 0.894 4 F -0.210 7.210 5 C -0.173 4.173 6 C -0.080 4.080 7 N -0.241 5.241 8 C -0.079 4.079 9 C -0.120 4.120 10 H 0.107 0.893 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.025 4.025 14 N -0.322 5.322 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.273 4.273 18 S 0.073 5.927 19 C -0.690 4.690 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 C 0.017 3.983 28 H 0.085 0.915 29 C -0.087 4.087 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.606 -17.601 -20.293 27.103 hybrid contribution 0.162 0.233 1.508 1.534 sum -3.445 -17.368 -18.785 25.814 Atomic orbital electron populations 1.22354 0.93071 1.03916 1.04150 1.21707 0.95858 0.96312 0.81391 0.89430 1.92782 1.90560 1.83724 1.53970 1.22126 0.95111 1.02585 0.97458 1.22315 0.95834 0.96505 0.93394 1.63800 1.11778 1.47369 1.01171 1.23246 0.86781 1.02618 0.95240 1.22592 0.98483 0.95772 0.95136 0.89317 1.21425 1.03517 0.94868 0.94169 1.21895 0.97957 1.00163 0.96786 1.22178 1.00351 0.81694 0.98243 1.47480 1.71319 1.07006 1.06390 1.20246 0.75386 0.83782 0.88734 1.90667 1.50007 1.30180 1.73702 1.23363 1.06259 1.03305 0.94322 1.85607 1.94978 1.06513 1.05568 1.23212 1.57063 0.96857 0.91898 0.89826 1.26143 0.93949 0.94097 1.05044 1.70197 1.47608 1.00526 1.36534 0.84897 0.78028 0.79133 0.75845 1.17871 1.19988 1.19953 1.21608 0.96689 1.00077 0.79954 0.91546 1.22960 0.96527 0.97235 0.91972 0.89711 0.91093 0.91248 0.89916 0.89961 0.94956 0.89968 0.93518 0.87813 0.90321 0.90017 0.88028 0.92375 0.89300 0.89074 0.87317 0.87415 0.92016 0.89581 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.65 71.98 0.69 -1.27 16 2 C 0.08 1.17 3.96 30.60 0.12 1.29 16 3 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 4 F -0.23 -4.29 16.76 44.97 0.75 -3.54 16 5 C -0.13 -1.93 5.01 30.60 0.15 -1.78 16 6 C 0.05 0.78 4.46 86.30 0.38 1.16 16 7 N -0.52 -8.90 4.77 -884.83 -4.22 -13.12 16 8 C 0.05 0.76 5.97 86.97 0.52 1.28 16 9 C -0.10 -1.80 3.70 -9.48 -0.04 -1.84 16 10 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 11 C -0.10 -1.43 4.82 30.49 0.15 -1.28 16 12 C -0.13 -1.94 6.11 30.66 0.19 -1.75 16 13 C 0.10 1.86 6.07 86.47 0.53 2.38 16 14 N -0.59 -16.04 2.72 -795.62 -2.16 -18.21 16 15 C 0.53 20.21 7.68 87.66 0.67 20.88 16 16 O -0.57 -26.88 15.18 -3.02 -0.05 -26.92 16 17 C -0.12 -4.85 4.47 71.24 0.32 -4.53 16 18 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 19 C -0.54 -30.79 9.50 67.95 0.65 -30.15 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 23 Si 1.00 43.31 29.55 68.60 2.03 45.33 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.12 3.01 2.92 45.89 0.13 3.14 16 28 H 0.07 2.10 6.95 -2.38 -0.02 2.08 16 29 C 0.04 0.88 5.39 86.33 0.47 1.34 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.18 7.15 -2.39 -0.02 1.17 16 35 H 0.03 0.58 7.97 -2.39 -0.02 0.56 16 36 H 0.08 1.31 7.87 -2.39 -0.02 1.29 16 37 H 0.05 0.76 7.82 -2.39 -0.02 0.74 16 38 H 0.10 1.30 7.99 -2.39 -0.02 1.28 16 39 H 0.08 1.12 7.27 -2.39 -0.02 1.11 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 1.41 7.54 -2.39 -0.02 1.39 16 44 H 0.09 1.79 5.82 -2.39 -0.01 1.78 16 45 H 0.11 3.91 7.93 -2.39 -0.02 3.89 16 46 H 0.11 3.90 7.62 -2.40 -0.02 3.88 16 47 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.09 1.74 7.26 -2.39 -0.02 1.72 16 49 H 0.05 1.15 6.93 -2.39 -0.02 1.14 16 Total: -1.00 -74.79 394.79 1.80 -72.99 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.92 Total: 18.85 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.40 Total: -9.94 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -6.09 Total: -87.04 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.75 Total: -3.54 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -74.79 1.80 -72.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717040094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.211 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds