Wall clock time and date at job start Wed Apr 1 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.46958 * 149.99165 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 N 1.46497 * 109.47408 * 295.00294 * 13 12 11 16 16 C 1.34775 * 120.00290 * 154.99725 * 15 13 12 17 17 O 1.21284 * 120.00239 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99766 * 179.97438 * 16 15 13 19 19 N 1.46501 * 109.46660 * 179.97438 * 18 16 15 20 20 N 1.28880 * 125.45003 * 90.00353 * 19 18 16 21 21 C 1.31037 * 107.91821 * 179.97438 * 20 19 18 22 22 N 1.33309 * 106.90208 * 0.02562 * 21 20 19 23 23 N 1.28781 * 125.45182 * 269.69264 * 19 18 16 24 24 C 1.50699 * 109.47482 * 174.99860 * 13 12 11 25 25 C 1.38236 * 119.99912 * 79.72929 * 24 13 12 26 26 C 1.38233 * 120.00045 * 179.78941 * 25 24 13 27 27 C 1.38233 * 119.99944 * 0.44003 * 26 25 24 28 28 C 1.38233 * 120.00018 * 359.81457 * 27 26 25 29 29 C 1.38232 * 120.00107 * 359.97438 * 28 27 26 30 30 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 36 36 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 38 38 H 0.97003 * 119.99849 * 334.99597 * 15 13 12 39 39 H 1.08993 * 109.47314 * 299.99790 * 18 16 15 40 40 H 1.08997 * 109.47088 * 60.00406 * 18 16 15 41 41 H 1.08002 * 126.54809 * 180.02562 * 21 20 19 42 42 H 1.08006 * 119.99710 * 359.97438 * 25 24 13 43 43 H 1.08005 * 119.99852 * 180.27043 * 26 25 24 44 44 H 1.08007 * 119.99899 * 179.83549 * 27 26 25 45 45 H 1.08003 * 120.00170 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.00242 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0004 13 6 7.8856 -3.2367 0.0011 14 1 8.1349 -2.5914 0.8434 15 7 8.2595 -2.5727 -1.2501 16 6 9.3574 -1.7924 -1.2970 17 8 10.0356 -1.6394 -0.3032 18 6 9.7422 -1.1098 -2.5843 19 7 10.9622 -0.3259 -2.3756 20 7 12.1654 -0.7585 -2.5369 21 6 12.9875 0.2233 -2.2587 22 7 12.2378 1.2724 -1.9204 23 7 11.0036 0.9073 -2.0069 24 6 8.6381 -4.5365 0.1243 25 6 8.8175 -5.3393 -0.9867 26 6 9.5115 -6.5295 -0.8746 27 6 10.0183 -6.9214 0.3504 28 6 9.8344 -6.1211 1.4624 29 6 9.1442 -4.9288 1.3494 30 1 -0.4849 0.8400 -0.0004 31 1 3.8647 -0.3620 0.0014 32 1 3.8492 -3.0422 -0.8892 33 1 3.8485 -3.0427 0.8907 34 1 5.8798 -1.6196 -0.8889 35 1 5.8797 -1.6197 0.8911 36 1 6.1182 -4.0882 0.8902 37 1 6.1181 -4.0874 -0.8897 38 1 7.7169 -2.6947 -2.0449 39 1 9.9196 -1.8603 -3.3546 40 1 8.9355 -0.4484 -2.9002 41 1 14.0663 0.1890 -2.2962 42 1 8.4179 -5.0351 -1.9429 43 1 9.6554 -7.1546 -1.7435 44 1 10.5583 -7.8526 0.4385 45 1 10.2308 -6.4270 2.4194 46 1 9.0009 -4.3034 2.2181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717716644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:04 Heat of formation + Delta-G solvation = 135.259742 kcal Electronic energy + Delta-G solvation = -29103.107305 eV Core-core repulsion = 25031.615624 eV Total energy + Delta-G solvation = -4071.491680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.59780 -40.69546 -39.23392 -36.85703 -35.31052 -35.07909 -33.37130 -32.88760 -31.87975 -31.12756 -30.57760 -29.62662 -27.27537 -24.45718 -24.22991 -23.61431 -22.88981 -22.18401 -21.44940 -21.05741 -20.73645 -18.51034 -18.29986 -17.62875 -17.22260 -16.74157 -16.32354 -16.21319 -15.60748 -15.31198 -14.91482 -14.73871 -14.55835 -14.22220 -14.15399 -13.94917 -13.69274 -13.55398 -13.21142 -13.04753 -12.76115 -12.47743 -12.24042 -12.16672 -11.90029 -11.51156 -11.44893 -11.28548 -11.24472 -11.11620 -10.99377 -10.93198 -10.65360 -10.64156 -10.26885 -10.16056 -9.65121 -9.59690 -9.15489 -8.96619 -8.92889 -7.27057 -5.79957 -3.15917 0.86992 1.07406 1.16446 1.42231 1.97949 2.00415 2.63563 3.35378 3.38512 3.43930 3.52636 3.72056 3.99554 4.08589 4.25141 4.34296 4.56469 4.57097 4.57811 4.69664 4.78014 4.85976 4.94231 5.11526 5.22211 5.30033 5.39790 5.41147 5.44811 5.51012 5.60959 5.70506 5.73541 5.73962 5.79379 5.87413 5.96119 6.00174 6.16282 6.20754 6.26524 6.36348 6.66005 6.69292 6.74030 6.90146 7.60207 7.95974 8.08371 8.39136 9.18123 9.90550 10.09912 11.38419 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.003113 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3804.738905 B = 8993.090788 C =12236.802966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.158 3.842 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.188 3.812 14 H 0.100 0.900 15 N -0.710 5.710 16 C 0.507 3.493 17 O -0.514 6.514 18 C 0.108 3.892 19 N -0.127 5.127 20 N -0.303 5.303 21 C 0.145 3.855 22 N -0.284 5.284 23 N -0.046 5.046 24 C -0.092 4.092 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.103 4.103 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.236 0.764 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.207 -11.651 -6.290 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.030 3.970 11 C -0.168 4.168 12 C -0.155 4.155 13 C 0.084 3.916 14 H 0.118 0.882 15 N -0.362 5.362 16 C 0.290 3.710 17 O -0.389 6.389 18 C -0.017 4.017 19 N -0.038 5.038 20 N -0.152 5.152 21 C -0.159 4.159 22 N -0.155 5.155 23 N -0.040 5.040 24 C -0.093 4.093 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.122 4.122 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.242 0.758 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.252 0.748 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 25.834 -11.377 -5.475 28.754 hybrid contribution 0.820 0.817 -0.422 1.232 sum 26.654 -10.560 -5.897 29.270 Atomic orbital electron populations 1.69704 1.05123 1.25884 1.57489 1.24690 0.95257 0.97266 1.01973 0.86540 0.79246 0.84898 0.77785 1.21051 1.21659 1.20327 1.19059 0.80662 0.94730 1.43152 0.89255 1.42724 1.04091 1.02285 1.91227 1.20604 0.88420 0.89334 0.98605 1.21810 0.96498 0.96206 1.02297 1.21835 0.90705 0.98941 1.04058 1.20012 0.94205 0.90365 0.87019 0.88184 1.45867 1.27133 1.48694 1.14552 1.20176 0.81661 0.79682 0.89512 1.90832 1.51205 1.61194 1.35620 1.22022 0.83382 0.97314 0.98943 1.49467 1.05970 1.07585 1.40762 1.74695 0.90678 1.27768 1.22050 1.27346 1.02739 0.85276 1.00495 1.75904 0.95520 1.25881 1.18237 1.79058 1.15978 0.96200 1.12777 1.20155 0.98923 0.96245 0.94005 1.20888 0.99068 0.94411 0.98097 1.21120 0.98460 0.96717 0.97660 1.21159 1.00069 0.99730 0.93027 1.21139 0.99055 0.94757 0.98755 1.21029 0.97304 0.96661 0.97167 0.93018 0.80696 0.95605 0.95610 0.91949 0.91782 0.89598 0.90729 0.75812 0.83590 0.83174 0.74798 0.86329 0.86148 0.86230 0.86045 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 22.00 27.74 -169.99 -4.71 17.28 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.76 -17.57 5.41 -59.91 -0.32 -17.89 16 10 C 0.16 2.80 6.26 -4.04 -0.03 2.77 16 11 C -0.13 -1.67 5.22 -26.73 -0.14 -1.81 16 12 C -0.12 -1.11 4.73 -26.74 -0.13 -1.24 16 13 C 0.19 1.74 2.17 -69.09 -0.15 1.59 16 14 H 0.10 1.13 7.44 -51.93 -0.39 0.75 16 15 N -0.71 -5.25 3.78 -54.93 -0.21 -5.46 16 16 C 0.51 4.81 7.86 -10.98 -0.09 4.72 16 17 O -0.51 -7.45 16.09 5.55 0.09 -7.36 16 18 C 0.11 0.70 7.08 -5.19 -0.04 0.67 16 19 N -0.13 -1.35 3.49 -11.72 -0.04 -1.39 16 20 N -0.30 -3.26 12.13 29.34 0.36 -2.90 16 21 C 0.14 1.41 13.26 -91.59 -1.21 0.19 16 22 N -0.28 -3.59 12.50 29.33 0.37 -3.22 16 23 N -0.05 -0.60 13.25 60.35 0.80 0.20 16 24 C -0.09 -0.88 4.91 -104.62 -0.51 -1.39 16 25 C -0.11 -0.90 9.32 -39.58 -0.37 -1.27 16 26 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 29 C -0.10 -1.03 9.67 -39.58 -0.38 -1.41 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.36 8.17 5.53 -40.82 -0.23 7.94 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 1.76 8.60 -40.82 -0.35 1.41 16 39 H 0.15 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.15 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.24 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 0.76 7.73 -52.48 -0.41 0.35 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -39.25 396.36 -7.85 -47.10 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.44 Total: 4.65 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -4.49 Total: -8.51 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 1.73 Total: -59.13 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.25 -7.85 -47.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717716644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.360 kcal (2) G-P(sol) polarization free energy of solvation -39.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds