Wall clock time and date at job start Wed Apr 1 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46904 * 2 1 4 4 F 1.39904 * 109.47128 * 120.00063 * 2 1 3 5 5 C 1.53001 * 109.47241 * 240.00248 * 2 1 3 6 6 C 1.53002 * 109.47232 * 175.00037 * 5 2 1 7 7 N 1.46902 * 109.46781 * 179.97438 * 6 5 2 8 8 C 1.46809 * 111.00002 * 314.14099 * 7 6 5 9 9 C 1.53034 * 109.79927 * 172.35307 * 8 7 6 10 10 C 1.53319 * 109.16042 * 61.06675 * 9 8 7 11 11 C 1.52616 * 108.89536 * 304.76566 * 10 9 8 12 12 C 1.52916 * 114.10734 * 280.67649 * 11 10 9 13 13 N 1.47172 * 87.83874 * 220.51329 * 12 11 10 14 14 C 1.34775 * 135.99230 * 206.63016 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99746 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99690 * 22 20 18 24 24 H 1.48494 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48501 * 109.46989 * 330.00246 * 22 20 18 26 26 C 1.47168 * 88.00754 * 26.88981 * 13 12 11 27 27 C 1.47048 * 110.99319 * 189.99979 * 7 6 5 28 28 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47447 * 299.99811 * 1 2 3 30 30 H 1.08993 * 109.47476 * 59.99847 * 1 2 3 31 31 H 1.09000 * 109.47036 * 54.99724 * 5 2 1 32 32 H 1.09005 * 109.46813 * 294.99888 * 5 2 1 33 33 H 1.08993 * 109.47026 * 59.99907 * 6 5 2 34 34 H 1.08998 * 109.46840 * 300.00287 * 6 5 2 35 35 H 1.08996 * 109.42517 * 292.45520 * 8 7 6 36 36 H 1.09004 * 109.41658 * 52.32317 * 8 7 6 37 37 H 1.09003 * 109.52301 * 180.96824 * 9 8 7 38 38 H 1.08990 * 109.52138 * 301.09740 * 9 8 7 39 39 H 1.09007 * 109.56558 * 184.94689 * 10 9 8 40 40 H 1.08999 * 109.56883 * 64.59325 * 10 9 8 41 41 H 1.08995 * 113.49259 * 105.76756 * 12 11 10 42 42 H 1.08999 * 113.49408 * 335.25204 * 12 11 10 43 43 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 44 44 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.49014 * 87.85597 * 26 13 12 47 47 H 1.09002 * 113.48990 * 218.36473 * 26 13 12 48 48 H 1.08993 * 109.50343 * 63.21945 * 27 7 6 49 49 H 1.09000 * 109.50131 * 303.11038 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2493 6 6 3.5648 -0.6132 -1.3137 7 7 4.0545 -1.3062 -2.5129 8 6 3.4142 -2.6191 -2.6601 9 6 3.7964 -3.2339 -4.0084 10 6 5.3169 -3.4229 -4.0623 11 6 5.9917 -2.0828 -3.7835 12 6 6.0239 -1.1377 -4.9852 13 7 7.3943 -0.7733 -4.5914 14 6 8.1927 0.3020 -4.7422 15 8 7.7884 1.2792 -5.3360 16 6 9.5877 0.2905 -4.1721 17 16 10.4014 1.8657 -4.5364 18 6 11.9671 1.5838 -3.7789 19 1 12.1667 0.6443 -3.2850 20 6 12.9443 2.5687 -3.8178 21 7 14.1137 2.3582 -3.2515 22 14 12.5994 4.1934 -4.6727 23 1 12.0224 5.1532 -3.6974 24 1 13.8657 4.7440 -5.2189 25 1 11.6357 3.9747 -5.7812 26 6 7.5126 -2.1003 -3.9663 27 6 5.5195 -1.4303 -2.4884 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0727 -0.4260 34 1 3.8532 0.4370 -1.3573 35 1 3.7448 -3.2759 -1.8557 36 1 2.3316 -2.5019 -2.6104 37 1 3.3050 -4.2005 -4.1204 38 1 3.4821 -2.5701 -4.8136 39 1 5.6058 -3.7782 -5.0515 40 1 5.6215 -4.1489 -3.3085 41 1 5.3157 -0.3127 -4.9082 42 1 5.9699 -1.6525 -5.9445 43 1 10.1564 -0.5247 -4.6196 44 1 9.5378 0.1489 -3.0925 45 1 14.7966 3.0467 -3.2784 46 1 7.8589 -2.8740 -4.6516 47 1 8.0649 -2.0903 -3.0267 48 1 5.8184 -2.0465 -1.6405 49 1 5.9670 -0.4407 -2.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725337351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:58 Heat of formation + Delta-G solvation = -54.153297 kcal Electronic energy + Delta-G solvation = -28053.234279 eV Core-core repulsion = 24056.760272 eV Total energy + Delta-G solvation = -3996.474007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.98100 -41.18335 -38.73621 -37.36245 -34.78382 -32.93975 -32.43347 -31.06573 -29.66623 -28.94002 -26.25529 -25.97184 -25.50298 -25.16297 -22.96285 -22.24663 -20.74427 -19.44483 -18.58965 -17.66331 -17.08100 -16.77866 -16.53626 -15.86683 -15.66533 -15.46503 -15.20799 -15.07881 -14.92743 -14.64518 -14.46701 -14.08777 -13.83889 -13.54882 -13.32760 -13.18379 -12.89918 -12.83016 -12.76725 -12.70308 -12.50478 -12.17058 -12.06807 -11.86704 -11.50347 -11.36269 -11.30531 -11.25554 -11.04455 -11.00067 -10.75398 -10.69320 -10.57945 -10.38200 -9.84393 -9.42682 -8.99682 -8.61730 -8.59868 -8.48762 -6.91176 -6.28271 -3.99905 2.64231 2.98696 3.16960 3.33905 3.35238 3.51578 3.59657 4.02850 4.13631 4.27525 4.33096 4.33667 4.38593 4.44493 4.51276 4.64754 4.71413 4.76836 4.83492 4.90077 4.98297 5.08886 5.10775 5.11761 5.18927 5.24006 5.31012 5.32697 5.35221 5.38068 5.41836 5.52185 5.54711 5.57994 5.59735 5.66740 5.67530 5.75049 5.78570 5.79556 5.91827 5.97819 6.03481 6.09855 6.72074 6.76458 7.85342 7.94871 8.42225 8.48450 9.17925 10.80932 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002294 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.797470 B =12200.753932 C =13407.458285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.085 0.915 4 F -0.216 7.216 5 C -0.149 4.149 6 C 0.054 3.946 7 N -0.533 5.533 8 C 0.046 3.954 9 C -0.115 4.115 10 C -0.103 4.103 11 C -0.092 4.092 12 C 0.123 3.877 13 N -0.651 5.651 14 C 0.560 3.440 15 O -0.517 6.517 16 C -0.115 4.115 17 S -0.142 6.142 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.109 3.891 27 C 0.085 3.915 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.041 0.959 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.872 -14.071 3.403 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.103 0.897 4 F -0.197 7.197 5 C -0.187 4.187 6 C -0.074 4.074 7 N -0.258 5.258 8 C -0.081 4.081 9 C -0.153 4.153 10 C -0.141 4.141 11 C -0.093 4.093 12 C 0.000 4.000 13 N -0.389 5.389 14 C 0.349 3.651 15 O -0.392 6.392 16 C -0.266 4.266 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.015 4.015 27 C -0.043 4.043 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.236 -12.059 2.158 30.779 hybrid contribution 1.016 -0.991 1.218 1.870 sum -27.220 -13.050 3.376 30.375 Atomic orbital electron populations 1.22364 0.94201 1.03529 1.03579 1.21577 0.94852 0.96524 0.82066 0.89694 1.92823 1.90298 1.83388 1.53155 1.22396 0.96271 1.02098 0.97954 1.22109 0.94168 1.00003 0.91124 1.61983 1.05553 1.19806 1.38413 1.22234 0.99588 0.89271 0.97046 1.21594 0.95546 1.00513 0.97630 1.21435 0.95341 0.95107 1.02213 1.21835 0.95102 0.96164 0.96242 1.22820 0.83815 0.97009 0.96334 1.49645 1.16198 1.14417 1.58606 1.19850 0.85533 0.80830 0.78844 1.90710 1.74515 1.32488 1.41460 1.23210 0.94323 1.04960 1.04059 1.84787 1.14555 1.16925 1.75314 1.22307 0.97041 1.06378 1.41072 0.89419 1.24713 0.93938 0.98450 0.94227 1.69939 1.04393 1.34817 1.42550 0.86732 0.79331 0.83788 0.81999 1.19191 1.19929 1.15906 1.23045 0.95158 0.84916 0.98386 1.21683 0.87174 1.00900 0.94539 0.91493 0.91394 0.90534 0.89072 0.90339 0.94160 0.90202 0.94911 0.90196 0.91371 0.90821 0.90978 0.91423 0.89843 0.90363 0.88676 0.88743 0.91947 0.89432 0.90237 0.94073 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 9.65 37.16 0.36 -0.50 16 2 C 0.09 0.55 3.96 -26.73 -0.11 0.45 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 4 F -0.22 -2.03 16.76 2.25 0.04 -1.99 16 5 C -0.15 -0.92 4.24 -26.73 -0.11 -1.03 16 6 C 0.05 0.44 5.20 -3.82 -0.02 0.42 16 7 N -0.53 -4.56 4.82 -234.87 -1.13 -5.69 16 8 C 0.05 0.32 4.85 -3.86 -0.02 0.30 16 9 C -0.12 -0.70 6.08 -26.55 -0.16 -0.86 16 10 C -0.10 -0.66 5.23 -26.76 -0.14 -0.80 16 11 C -0.09 -0.81 0.95 -154.90 -0.15 -0.95 16 12 C 0.12 1.39 7.70 -8.19 -0.06 1.33 16 13 N -0.65 -9.25 3.47 -184.98 -0.64 -9.89 16 14 C 0.56 10.74 8.10 -10.98 -0.09 10.65 16 15 O -0.52 -11.94 16.64 5.56 0.09 -11.85 16 16 C -0.12 -2.34 5.98 36.01 0.22 -2.13 16 17 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 18 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 22 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.06 6.74 56.52 0.38 -5.67 16 26 C 0.11 1.09 7.60 -8.05 -0.06 1.03 16 27 C 0.08 0.81 4.62 -3.99 -0.02 0.79 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.46 6.17 -51.93 -0.32 0.14 16 33 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.47 5.69 -51.93 -0.30 0.18 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 42 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 43 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 44 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -34.72 402.79 -10.26 -44.98 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.61 Total: -3.78 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.15 Total: -3.48 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -1.00 Total: -41.58 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.72 -10.26 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725337351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.172 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds