Wall clock time and date at job start Wed Apr 1 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46904 * 2 1 4 4 F 1.39904 * 109.47128 * 120.00063 * 2 1 3 5 5 C 1.53001 * 109.47241 * 240.00248 * 2 1 3 6 6 C 1.53002 * 109.47232 * 175.00037 * 5 2 1 7 7 N 1.46902 * 109.46781 * 179.97438 * 6 5 2 8 8 C 1.46809 * 111.00002 * 314.14099 * 7 6 5 9 9 C 1.53034 * 109.79927 * 172.35307 * 8 7 6 10 10 C 1.53319 * 109.16042 * 61.06675 * 9 8 7 11 11 C 1.52616 * 108.89536 * 304.76566 * 10 9 8 12 12 C 1.52916 * 114.10734 * 280.67649 * 11 10 9 13 13 N 1.47172 * 87.83874 * 220.51329 * 12 11 10 14 14 C 1.34775 * 135.99230 * 206.63016 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99746 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46889 * 89.99690 * 22 20 18 24 24 H 1.48494 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48501 * 109.46989 * 330.00246 * 22 20 18 26 26 C 1.47168 * 88.00754 * 26.88981 * 13 12 11 27 27 C 1.47048 * 110.99319 * 189.99979 * 7 6 5 28 28 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47447 * 299.99811 * 1 2 3 30 30 H 1.08993 * 109.47476 * 59.99847 * 1 2 3 31 31 H 1.09000 * 109.47036 * 54.99724 * 5 2 1 32 32 H 1.09005 * 109.46813 * 294.99888 * 5 2 1 33 33 H 1.08993 * 109.47026 * 59.99907 * 6 5 2 34 34 H 1.08998 * 109.46840 * 300.00287 * 6 5 2 35 35 H 1.08996 * 109.42517 * 292.45520 * 8 7 6 36 36 H 1.09004 * 109.41658 * 52.32317 * 8 7 6 37 37 H 1.09003 * 109.52301 * 180.96824 * 9 8 7 38 38 H 1.08990 * 109.52138 * 301.09740 * 9 8 7 39 39 H 1.09007 * 109.56558 * 184.94689 * 10 9 8 40 40 H 1.08999 * 109.56883 * 64.59325 * 10 9 8 41 41 H 1.08995 * 113.49259 * 105.76756 * 12 11 10 42 42 H 1.08999 * 113.49408 * 335.25204 * 12 11 10 43 43 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 44 44 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 45 45 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.49014 * 87.85597 * 26 13 12 47 47 H 1.09002 * 113.48990 * 218.36473 * 26 13 12 48 48 H 1.08993 * 109.50343 * 63.21945 * 27 7 6 49 49 H 1.09000 * 109.50131 * 303.11038 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2493 6 6 3.5648 -0.6132 -1.3137 7 7 4.0545 -1.3062 -2.5129 8 6 3.4142 -2.6191 -2.6601 9 6 3.7964 -3.2339 -4.0084 10 6 5.3169 -3.4229 -4.0623 11 6 5.9917 -2.0828 -3.7835 12 6 6.0239 -1.1377 -4.9852 13 7 7.3943 -0.7733 -4.5914 14 6 8.1927 0.3020 -4.7422 15 8 7.7884 1.2792 -5.3360 16 6 9.5877 0.2905 -4.1721 17 16 10.4014 1.8657 -4.5364 18 6 11.9671 1.5838 -3.7789 19 1 12.1667 0.6443 -3.2850 20 6 12.9443 2.5687 -3.8178 21 7 14.1137 2.3582 -3.2515 22 14 12.5994 4.1934 -4.6727 23 1 12.0224 5.1532 -3.6974 24 1 13.8657 4.7440 -5.2189 25 1 11.6357 3.9747 -5.7812 26 6 7.5126 -2.1003 -3.9663 27 6 5.5195 -1.4303 -2.4884 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0727 -0.4260 34 1 3.8532 0.4370 -1.3573 35 1 3.7448 -3.2759 -1.8557 36 1 2.3316 -2.5019 -2.6104 37 1 3.3050 -4.2005 -4.1204 38 1 3.4821 -2.5701 -4.8136 39 1 5.6058 -3.7782 -5.0515 40 1 5.6215 -4.1489 -3.3085 41 1 5.3157 -0.3127 -4.9082 42 1 5.9699 -1.6525 -5.9445 43 1 10.1564 -0.5247 -4.6196 44 1 9.5378 0.1489 -3.0925 45 1 14.7966 3.0467 -3.2784 46 1 7.8589 -2.8740 -4.6516 47 1 8.0649 -2.0903 -3.0267 48 1 5.8184 -2.0465 -1.6405 49 1 5.9670 -0.4407 -2.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725337351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:57 Heat of formation + Delta-G solvation = -76.550232 kcal Electronic energy + Delta-G solvation = -28054.205483 eV Core-core repulsion = 24056.760272 eV Total energy + Delta-G solvation = -3997.445211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.61877 -42.10533 -39.87108 -38.40440 -35.40825 -34.70230 -33.52439 -32.21866 -30.69830 -29.72260 -27.92231 -27.10991 -26.86546 -25.77155 -23.59569 -22.82461 -21.41832 -20.71239 -19.63720 -19.34709 -18.05054 -17.62266 -17.38747 -17.19125 -16.86452 -16.77074 -16.31014 -15.92428 -15.78100 -15.73282 -15.51225 -15.22218 -14.99262 -14.88665 -14.32932 -13.96991 -13.94287 -13.69921 -13.64845 -13.48156 -13.38093 -13.18237 -13.09061 -13.04293 -12.94219 -12.65968 -12.61393 -12.14628 -11.95816 -11.89740 -11.82506 -11.63523 -11.39326 -11.35830 -11.19765 -11.09882 -10.81329 -10.58260 -9.77515 -9.29012 -9.04409 -8.54168 -6.25930 0.91823 1.29346 1.41356 1.49237 1.52122 1.96635 2.22934 2.64109 2.67804 2.83791 3.27321 3.49603 3.59254 3.70721 3.75786 3.85744 3.88895 4.00034 4.05336 4.13230 4.23269 4.25329 4.31634 4.36801 4.41786 4.48187 4.52964 4.57532 4.62591 4.65231 4.72950 4.78275 4.81579 4.83958 4.84421 4.90587 4.98557 5.07487 5.11082 5.18355 5.20295 5.26990 5.37437 5.49964 5.68125 6.03441 6.08181 6.15382 6.60151 6.90634 7.04320 8.58234 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.002294 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.797470 B =12200.753932 C =13407.458285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H 0.088 0.912 4 F -0.234 7.234 5 C -0.139 4.139 6 C 0.054 3.946 7 N -0.540 5.540 8 C 0.044 3.956 9 C -0.112 4.112 10 C -0.097 4.097 11 C -0.073 4.073 12 C 0.121 3.879 13 N -0.650 5.650 14 C 0.559 3.441 15 O -0.568 6.568 16 C -0.099 4.099 17 S -0.174 6.174 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.256 1.256 25 H -0.238 1.238 26 C 0.105 3.895 27 C 0.085 3.915 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.278 0.722 46 H 0.117 0.883 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.938 -15.871 2.635 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.042 3.958 3 H 0.106 0.894 4 F -0.216 7.216 5 C -0.177 4.177 6 C -0.074 4.074 7 N -0.265 5.265 8 C -0.083 4.083 9 C -0.150 4.150 10 C -0.135 4.135 11 C -0.074 4.074 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.348 3.652 15 O -0.447 6.447 16 C -0.250 4.250 17 S 0.052 5.948 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.180 1.180 25 H -0.162 1.162 26 C -0.018 4.018 27 C -0.043 4.043 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.324 -13.927 1.412 33.399 hybrid contribution 1.556 -0.592 1.534 2.264 sum -28.768 -14.519 2.946 32.359 Atomic orbital electron populations 1.22341 0.92639 1.03950 1.04317 1.21792 0.96120 0.96495 0.81346 0.89445 1.92784 1.90674 1.83787 1.54326 1.22319 0.94573 1.02594 0.98168 1.22085 0.95637 0.99102 0.90575 1.61997 1.04919 1.21123 1.38438 1.22340 1.00117 0.88186 0.97668 1.21606 0.95361 1.01369 0.96664 1.21456 0.95279 0.93264 1.03538 1.21709 0.94391 0.96899 0.94419 1.23102 0.81418 0.97019 0.98593 1.49660 1.16822 1.14637 1.57397 1.19492 0.85315 0.81681 0.78689 1.90680 1.75364 1.34669 1.43997 1.23146 0.95179 1.01690 1.05010 1.84712 1.13343 1.21502 1.75224 1.22423 0.98776 1.05480 1.40975 0.92016 1.25561 0.93790 1.01724 0.94865 1.70011 1.05306 1.36267 1.43700 0.85870 0.79754 0.79805 0.80965 1.18665 1.18034 1.16204 1.23444 0.96309 0.82991 0.99006 1.21604 0.88024 0.99367 0.95317 0.91215 0.91436 0.89053 0.88119 0.89654 0.95400 0.91566 0.94952 0.89074 0.89259 0.91387 0.89363 0.90179 0.91703 0.88093 0.87283 0.87654 0.91279 0.86538 0.89802 0.93643 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.65 71.98 0.69 -0.72 16 2 C 0.08 0.95 3.96 30.59 0.12 1.08 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 F -0.23 -4.37 16.76 44.97 0.75 -3.62 16 5 C -0.14 -1.55 4.24 30.60 0.13 -1.42 16 6 C 0.05 0.87 5.20 86.30 0.45 1.31 16 7 N -0.54 -8.67 4.82 -896.99 -4.32 -13.00 16 8 C 0.04 0.49 4.85 86.33 0.42 0.91 16 9 C -0.11 -0.96 6.08 30.71 0.19 -0.78 16 10 C -0.10 -0.87 5.23 30.57 0.16 -0.71 16 11 C -0.07 -1.11 0.95 -52.43 -0.05 -1.16 16 12 C 0.12 2.51 7.70 83.33 0.64 3.15 16 13 N -0.65 -17.71 3.47 -857.53 -2.97 -20.68 16 14 C 0.56 21.41 8.10 87.66 0.71 22.12 16 15 O -0.57 -26.66 16.64 -3.04 -0.05 -26.71 16 16 C -0.10 -4.05 5.98 71.24 0.43 -3.62 16 17 S -0.17 -9.18 18.55 -56.49 -1.05 -10.23 16 18 C -0.53 -31.50 10.04 67.96 0.68 -30.82 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.76 5.50 84.86 0.47 3.22 16 21 N -0.92 -56.28 13.97 21.65 0.30 -55.98 16 22 Si 0.91 45.78 27.74 68.60 1.90 47.68 16 23 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 26 C 0.10 1.82 7.60 83.42 0.63 2.46 16 27 C 0.08 1.55 4.62 86.12 0.40 1.95 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.85 6.17 -2.38 -0.01 0.83 16 33 H 0.03 0.51 7.87 -2.39 -0.02 0.49 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.82 5.69 -2.39 -0.01 0.81 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.58 8.02 -2.38 -0.02 0.56 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 42 H 0.10 1.71 8.01 -2.39 -0.02 1.69 16 43 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 44 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 45 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 46 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 47 H 0.08 1.43 8.12 -2.39 -0.02 1.42 16 48 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 1.27 7.95 -2.39 -0.02 1.26 16 Total: -1.00 -77.22 402.79 1.51 -75.72 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.87 Total: 9.84 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 6.07 Total: -3.02 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -6.99 Total: -89.66 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.75 Total: -3.62 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.05 Total: -10.23 kcal Total: -77.22 1.51 -75.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725337351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.835 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds