Wall clock time and date at job start Wed Apr 1 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46876 * 2 1 4 4 F 1.39898 * 109.47459 * 240.00476 * 2 1 3 5 5 C 1.53002 * 109.47230 * 119.99636 * 2 1 3 6 6 C 1.53006 * 109.46993 * 185.00145 * 5 2 1 7 7 N 1.46902 * 109.46626 * 180.02562 * 6 5 2 8 8 C 1.46809 * 111.00002 * 294.14409 * 7 6 5 9 9 C 1.53034 * 109.79927 * 172.35307 * 8 7 6 10 10 C 1.53319 * 109.16042 * 61.06675 * 9 8 7 11 11 C 1.52616 * 108.89536 * 304.76566 * 10 9 8 12 12 C 1.52916 * 114.10734 * 280.67649 * 11 10 9 13 13 N 1.47172 * 87.83874 * 220.51329 * 12 11 10 14 14 C 1.34775 * 135.99230 * 206.63016 * 13 12 11 15 15 O 1.21282 * 120.00577 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 90.00066 * 22 20 18 24 24 H 1.48495 * 109.46931 * 210.00080 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00322 * 22 20 18 26 26 C 1.47168 * 88.00754 * 26.88981 * 13 12 11 27 27 C 1.47048 * 110.99319 * 170.00290 * 7 6 5 28 28 H 1.08994 * 109.47215 * 300.00010 * 1 2 3 29 29 H 1.08997 * 109.46902 * 60.00509 * 1 2 3 30 30 H 1.08996 * 109.46465 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46268 * 65.00627 * 5 2 1 32 32 H 1.08995 * 109.47015 * 305.00571 * 5 2 1 33 33 H 1.08994 * 109.46695 * 60.00427 * 6 5 2 34 34 H 1.08993 * 109.46910 * 300.00388 * 6 5 2 35 35 H 1.08996 * 109.42517 * 292.45520 * 8 7 6 36 36 H 1.09004 * 109.41658 * 52.32317 * 8 7 6 37 37 H 1.09003 * 109.52301 * 180.96824 * 9 8 7 38 38 H 1.08990 * 109.52138 * 301.09740 * 9 8 7 39 39 H 1.09007 * 109.56558 * 184.94689 * 10 9 8 40 40 H 1.08999 * 109.56883 * 64.59325 * 10 9 8 41 41 H 1.08995 * 113.49259 * 105.76756 * 12 11 10 42 42 H 1.08999 * 113.49408 * 335.25204 * 12 11 10 43 43 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 44 44 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 45 45 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.49014 * 87.85597 * 26 13 12 47 47 H 1.09002 * 113.48990 * 218.36473 * 26 13 12 48 48 H 1.08993 * 109.50343 * 63.21945 * 27 7 6 49 49 H 1.09000 * 109.50131 * 303.11038 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2493 6 6 3.5649 -0.6131 1.3137 7 7 4.0546 -1.3061 2.5129 8 6 3.6006 -0.6292 3.7339 9 6 3.9615 -1.4725 4.9589 10 6 5.4845 -1.6346 5.0273 11 6 5.9788 -2.2220 3.7083 12 6 5.7809 -3.7332 3.5845 13 7 7.1109 -3.7999 2.9580 14 6 7.7320 -4.6192 2.0865 15 8 7.1461 -5.5801 1.6343 16 6 9.1541 -4.3407 1.6728 17 16 9.7016 -5.6086 0.5028 18 6 11.3456 -5.0534 0.1970 19 1 11.7162 -4.1662 0.6889 20 6 12.1647 -5.7569 -0.6752 21 7 11.7131 -6.8385 -1.2743 22 14 13.9074 -5.1680 -1.0000 23 1 14.8319 -5.7938 -0.0208 24 1 14.3109 -5.5512 -2.3767 25 1 13.9647 -3.6906 -0.8605 26 6 7.4675 -2.5834 3.7055 27 6 5.5196 -1.4300 2.4884 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6054 -0.2617 2.1369 33 1 3.8532 0.4371 1.3574 34 1 3.9995 -1.0726 0.4260 35 1 4.0840 0.3448 3.8095 36 1 2.5196 -0.4950 3.6933 37 1 3.6073 -0.9743 5.8614 38 1 3.4932 -2.4533 4.8766 39 1 5.7438 -2.3062 5.8459 40 1 5.9482 -0.6617 5.1902 41 1 4.9694 -4.0115 2.9121 42 1 5.7273 -4.2446 4.5455 43 1 9.7978 -4.3552 2.5524 44 1 9.2092 -3.3609 1.1984 45 1 12.2854 -7.3299 -1.8841 46 1 7.8673 -2.7857 4.6992 47 1 8.0840 -1.8883 3.1356 48 1 5.9692 -0.4373 2.5087 49 1 5.8257 -1.9501 1.5807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725337379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:01 Heat of formation + Delta-G solvation = -80.342609 kcal Electronic energy + Delta-G solvation = -28037.221600 eV Core-core repulsion = 24039.611939 eV Total energy + Delta-G solvation = -3997.609661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.60266 -42.08132 -39.81523 -38.32220 -35.42381 -34.61329 -33.51877 -32.17235 -30.61054 -29.76949 -27.77255 -27.08527 -26.80101 -25.69436 -23.53010 -22.67109 -21.64984 -20.69105 -19.59261 -19.30584 -17.99749 -17.60041 -17.31940 -16.92576 -16.83139 -16.80233 -16.22951 -16.07353 -15.81947 -15.71235 -15.55024 -15.07294 -14.92294 -14.57204 -14.26360 -14.00374 -13.84562 -13.66630 -13.61844 -13.48488 -13.21932 -13.12484 -13.08001 -12.94225 -12.89923 -12.72099 -12.61514 -12.11283 -11.87702 -11.76534 -11.73758 -11.62082 -11.49306 -11.32977 -11.16569 -11.10823 -10.78660 -10.32390 -9.75326 -9.26494 -8.71892 -8.36876 -6.16566 1.19280 1.41316 1.41497 1.53485 1.55914 1.99703 2.24964 2.67982 2.96975 3.17916 3.31880 3.59209 3.67164 3.72514 3.78590 3.86514 3.93263 4.00451 4.06318 4.19272 4.23673 4.28743 4.32954 4.40062 4.42446 4.48862 4.53063 4.56645 4.64125 4.66446 4.72862 4.78439 4.80347 4.85907 4.87415 4.94378 4.99818 5.08302 5.15480 5.19230 5.20647 5.29187 5.38602 5.39677 5.51700 6.06131 6.17229 6.20314 6.63597 7.03567 7.09706 8.72624 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002336 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.082549 B =11983.014714 C =13369.181863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 H 0.098 0.902 4 F -0.239 7.239 5 C -0.134 4.134 6 C 0.056 3.944 7 N -0.548 5.548 8 C 0.050 3.950 9 C -0.114 4.114 10 C -0.096 4.096 11 C -0.072 4.072 12 C 0.117 3.883 13 N -0.652 5.652 14 C 0.557 3.443 15 O -0.573 6.573 16 C -0.115 4.115 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.002 2.998 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.258 1.258 26 C 0.107 3.893 27 C 0.086 3.914 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.272 0.728 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.652 22.622 16.217 34.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 H 0.116 0.884 4 F -0.220 7.220 5 C -0.172 4.172 6 C -0.072 4.072 7 N -0.272 5.272 8 C -0.077 4.077 9 C -0.151 4.151 10 C -0.134 4.134 11 C -0.073 4.073 12 C -0.005 4.005 13 N -0.387 5.387 14 C 0.346 3.654 15 O -0.452 6.452 16 C -0.266 4.266 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.181 1.181 26 C -0.015 4.015 27 C -0.042 4.042 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.104 0.896 48 H 0.071 0.929 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.573 20.445 15.255 33.408 hybrid contribution 2.081 1.279 -0.508 2.495 sum -19.493 21.724 14.747 32.701 Atomic orbital electron populations 1.22354 0.92818 1.03608 1.04542 1.21873 0.96057 0.96642 0.81239 0.88439 1.92797 1.90686 1.83989 1.54557 1.22169 0.94768 1.02050 0.98165 1.22030 0.95831 0.96824 0.92522 1.61855 1.09928 1.52600 1.02863 1.22259 1.01163 0.95417 0.88902 1.21608 0.95381 1.00755 0.97388 1.21453 0.96267 1.02113 0.93551 1.21725 0.94624 0.93541 0.97382 1.23105 0.84234 0.95732 0.97445 1.49703 1.17603 1.28920 1.42506 1.19654 0.86990 0.80639 0.78114 1.90683 1.67540 1.30294 1.56674 1.23237 0.95471 1.04295 1.03641 1.85628 1.15812 1.36028 1.55122 1.23174 0.98263 1.15575 1.32324 0.89926 1.26190 1.04274 0.94546 0.94285 1.70195 1.38692 1.17635 1.28269 0.84906 0.75903 0.79063 0.77794 1.19102 1.20197 1.18146 1.23432 0.96994 0.83704 0.97409 1.21582 0.87812 0.98402 0.96387 0.88418 0.91342 0.92087 0.91510 0.87554 0.93474 0.93152 0.94030 0.89431 0.88981 0.91951 0.89567 0.89649 0.92369 0.88273 0.87588 0.88000 0.91924 0.86548 0.89595 0.92928 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.65 71.98 0.69 -0.96 16 2 C 0.08 1.04 3.96 30.60 0.12 1.16 16 3 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 4 F -0.24 -5.42 16.76 44.97 0.75 -4.66 16 5 C -0.13 -1.74 4.92 30.60 0.15 -1.59 16 6 C 0.06 0.93 4.88 86.30 0.42 1.35 16 7 N -0.55 -9.22 4.67 -896.99 -4.19 -13.41 16 8 C 0.05 0.51 5.25 86.33 0.45 0.96 16 9 C -0.11 -0.98 6.08 30.71 0.19 -0.79 16 10 C -0.10 -0.86 5.23 30.57 0.16 -0.70 16 11 C -0.07 -1.15 0.95 -52.43 -0.05 -1.20 16 12 C 0.12 2.74 7.70 83.33 0.64 3.38 16 13 N -0.65 -19.44 3.47 -857.53 -2.97 -22.41 16 14 C 0.56 23.40 8.10 87.66 0.71 24.11 16 15 O -0.57 -29.91 16.64 -3.04 -0.05 -29.96 16 16 C -0.12 -5.01 5.98 71.24 0.43 -4.58 16 17 S -0.15 -8.96 20.57 -56.49 -1.16 -10.12 16 18 C -0.55 -32.12 9.50 67.96 0.65 -31.48 16 19 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -57.36 13.22 21.65 0.29 -57.07 16 22 Si 1.00 44.41 29.55 68.60 2.03 46.44 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 C 0.11 1.95 7.60 83.42 0.63 2.59 16 27 C 0.09 1.63 4.64 86.12 0.40 2.03 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 0.82 6.40 -2.39 -0.02 0.80 16 33 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 35 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.70 6.14 -2.39 -0.01 0.68 16 37 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.60 8.02 -2.38 -0.02 0.58 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 42 H 0.10 1.92 8.01 -2.39 -0.02 1.91 16 43 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 44 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 45 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 46 H 0.12 1.53 8.10 -2.39 -0.02 1.51 16 47 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 48 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 49 H 0.04 1.21 7.88 -2.39 -0.02 1.19 16 Total: -1.00 -83.33 406.65 1.66 -81.67 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.91 Total: 14.10 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 6.06 Total: -4.57 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -6.88 Total: -92.90 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.75 Total: -4.66 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -83.33 1.66 -81.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725337379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.326 kcal (2) G-P(sol) polarization free energy of solvation -83.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds