Wall clock time and date at job start Wed Apr 1 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47486 * 271.95046 * 3 2 1 5 5 H 1.48498 * 109.47306 * 31.95387 * 3 2 1 6 6 H 1.48508 * 109.46864 * 151.95169 * 3 2 1 7 7 C 1.38807 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 339.46986 * 7 2 1 9 9 N 1.36932 * 119.99998 * 159.47661 * 7 2 1 10 10 C 1.47085 * 120.88213 * 153.50990 * 9 7 2 11 11 C 1.53245 * 108.52064 * 128.79288 * 10 9 7 12 12 N 1.46900 * 109.33848 * 53.82868 * 11 10 9 13 13 C 1.46899 * 111.00163 * 172.74528 * 12 11 10 14 14 C 1.52996 * 109.47462 * 169.99896 * 13 12 11 15 15 N 1.46503 * 109.47305 * 179.97438 * 14 13 12 16 16 C 1.34771 * 120.00070 * 179.97438 * 15 14 13 17 17 O 1.21585 * 120.00077 * 0.02562 * 16 15 14 18 18 C 1.47535 * 119.99956 * 180.02562 * 16 15 14 19 19 C 1.39409 * 120.75333 * 359.97438 * 18 16 15 20 20 N 1.31919 * 121.01389 * 179.97438 * 19 18 16 21 21 C 1.31790 * 122.60165 * 0.02562 * 20 19 18 22 22 C 1.39438 * 120.63250 * 0.02562 * 21 20 19 23 23 N 1.35703 * 134.43203 * 180.02562 * 22 21 20 24 24 C 1.30143 * 109.49902 * 179.18820 * 23 22 21 25 25 N 1.36257 * 110.05471 * 0.68691 * 24 23 22 26 26 H 0.96994 * 126.29566 * 179.43306 * 25 24 23 27 27 C 1.36929 * 107.40338 * 359.42585 * 25 24 23 28 28 C 1.46896 * 111.27472 * 296.89735 * 12 11 10 29 29 C 1.47080 * 120.88121 * 333.49007 * 9 7 2 30 30 H 0.97009 * 119.99909 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.62915 * 9.08331 * 10 9 7 32 32 H 1.08997 * 109.78737 * 248.59717 * 10 9 7 33 33 H 1.09000 * 109.49348 * 173.78957 * 11 10 9 34 34 H 1.08995 * 109.49345 * 293.87143 * 11 10 9 35 35 H 1.08999 * 109.47163 * 290.00538 * 13 12 11 36 36 H 1.09008 * 109.46835 * 50.00007 * 13 12 11 37 37 H 1.08999 * 109.47456 * 300.00462 * 14 13 12 38 38 H 1.09000 * 109.46676 * 60.00297 * 14 13 12 39 39 H 0.97004 * 119.99753 * 0.02562 * 15 14 13 40 40 H 1.07993 * 119.49265 * 0.02562 * 19 18 16 41 41 H 1.08000 * 119.68311 * 180.02562 * 21 20 19 42 42 H 1.07997 * 124.97135 * 180.08799 * 24 23 22 43 43 H 1.09001 * 109.49168 * 303.15004 * 28 12 11 44 44 H 1.08999 * 109.50008 * 183.06514 * 28 12 11 45 45 H 1.08995 * 109.62655 * 350.91327 * 29 9 7 46 46 H 1.08993 * 109.63223 * 111.49952 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4564 2.0703 -1.3992 5 1 1.4689 2.6404 0.7410 6 1 3.5678 1.4286 0.6584 7 6 2.0102 -1.2021 -0.0005 8 1 1.5217 -2.1079 0.3271 9 7 3.3144 -1.2396 -0.4163 10 6 4.2354 -2.2737 0.0794 11 6 4.9156 -2.9366 -1.1232 12 7 5.5361 -1.9026 -1.9621 13 6 6.3435 -2.5061 -3.0307 14 6 6.7665 -1.4224 -4.0243 15 7 7.5723 -2.0242 -5.0896 16 6 8.0578 -1.2546 -6.0839 17 8 7.8274 -0.0609 -6.0965 18 6 8.8687 -1.8608 -7.1570 19 6 9.1429 -3.2277 -7.1578 20 7 9.8670 -3.7751 -8.1150 21 6 10.3688 -3.0766 -9.1135 22 6 10.1502 -1.7021 -9.1995 23 7 10.5196 -0.7345 -10.0763 24 6 10.0267 0.4082 -9.6952 25 7 9.3211 0.2508 -8.5403 26 1 8.8628 0.9495 -8.0477 27 6 9.3780 -1.0751 -8.2030 28 6 4.5275 -0.9897 -2.5162 29 6 3.8312 -0.2470 -1.3707 30 1 -0.4850 0.8401 0.0004 31 1 3.6772 -3.0216 0.6425 32 1 4.9894 -1.8191 0.7219 33 1 5.6815 -3.6282 -0.7722 34 1 4.1731 -3.4811 -1.7066 35 1 7.2306 -2.9690 -2.5984 36 1 5.7541 -3.2633 -3.5479 37 1 5.8794 -0.9595 -4.4566 38 1 7.3559 -0.6653 -3.5071 39 1 7.7557 -2.9767 -5.0798 40 1 8.7559 -3.8480 -6.3630 41 1 10.9550 -3.5734 -9.8724 42 1 10.1654 1.3457 -10.2130 43 1 3.7903 -1.5613 -3.0802 44 1 5.0117 -0.2694 -3.1755 45 1 3.0059 0.3449 -1.7663 46 1 4.5462 0.4053 -0.8695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731365470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:03 Heat of formation + Delta-G solvation = 66.439367 kcal Electronic energy + Delta-G solvation = -29146.374068 eV Core-core repulsion = 25071.898112 eV Total energy + Delta-G solvation = -4074.475956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.52789 -40.99872 -39.97690 -39.38100 -37.07356 -35.55377 -34.41465 -33.67364 -32.49756 -32.06338 -31.23906 -30.18079 -27.81322 -25.82484 -25.04441 -24.68618 -24.22268 -23.35299 -22.49261 -21.79688 -21.04404 -19.70248 -18.99344 -18.73508 -18.37446 -17.67219 -17.08281 -16.93693 -16.46795 -16.42114 -15.99734 -15.92634 -15.83796 -15.77384 -15.62958 -15.33252 -14.98026 -14.73083 -14.44553 -14.31790 -14.07891 -13.79146 -13.65798 -13.43005 -12.98840 -12.78959 -12.44485 -12.24190 -12.12548 -12.03485 -11.81038 -11.79237 -11.58648 -11.46071 -11.44280 -10.75722 -10.68820 -10.39287 -10.16831 -9.53678 -9.40079 -8.91866 -8.19091 -5.50138 -0.77382 0.20553 1.27503 1.33383 1.39291 1.48599 1.79370 1.85010 1.90345 2.39067 2.73158 2.90743 3.02890 3.06172 3.21808 3.34922 3.42025 3.68765 3.75689 3.82080 4.02530 4.07873 4.13014 4.17288 4.21146 4.37285 4.43752 4.51794 4.53159 4.55978 4.69844 4.76605 4.82250 4.87364 4.91657 4.97618 5.00418 5.07585 5.19679 5.29699 5.30247 5.80793 6.01798 6.05725 6.15830 6.17369 6.32454 6.51973 6.78824 6.87780 6.98166 7.59104 8.01695 9.00663 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002062 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.191642 B =13576.717603 C =14576.651309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.037 4.037 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.311 1.311 6 H -0.264 1.264 7 C -0.246 4.246 8 H 0.055 0.945 9 N -0.624 5.624 10 C 0.143 3.857 11 C 0.054 3.946 12 N -0.536 5.536 13 C 0.051 3.949 14 C 0.121 3.879 15 N -0.703 5.703 16 C 0.567 3.433 17 O -0.580 6.580 18 C -0.193 4.193 19 C 0.149 3.851 20 N -0.500 5.500 21 C 0.200 3.800 22 C -0.035 4.035 23 N -0.507 5.507 24 C 0.281 3.719 25 N -0.580 5.580 26 H 0.441 0.559 27 C 0.107 3.893 28 C 0.046 3.954 29 C 0.124 3.876 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.108 0.892 34 H 0.026 0.974 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.417 0.583 40 H 0.197 0.803 41 H 0.193 0.807 42 H 0.270 0.730 43 H 0.026 0.974 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.268 -5.458 -19.304 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.231 4.231 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.239 1.239 6 H -0.188 1.188 7 C -0.376 4.376 8 H 0.073 0.927 9 N -0.349 5.349 10 C 0.018 3.982 11 C -0.075 4.075 12 N -0.262 5.262 13 C -0.077 4.077 14 C -0.003 4.003 15 N -0.355 5.355 16 C 0.355 3.645 17 O -0.462 6.462 18 C -0.202 4.202 19 C -0.004 4.004 20 N -0.210 5.210 21 C 0.036 3.964 22 C -0.155 4.155 23 N -0.227 5.227 24 C -0.006 4.006 25 N -0.191 5.191 26 H 0.283 0.717 27 C -0.015 4.015 28 C -0.083 4.083 29 C -0.001 4.001 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.126 0.874 34 H 0.044 0.956 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.214 0.786 41 H 0.210 0.790 42 H 0.286 0.714 43 H 0.044 0.956 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 25.915 -5.377 -19.600 32.935 hybrid contribution -1.801 1.705 0.690 2.574 sum 24.114 -3.672 -18.910 30.864 Atomic orbital electron populations 1.69962 1.07290 1.27167 1.55892 1.25876 0.95857 1.00866 1.00541 0.85938 0.78562 0.80399 0.77597 1.20185 1.23949 1.18843 1.18887 0.86574 0.93609 1.38508 0.92686 1.44574 1.07778 1.33497 1.49058 1.21224 0.91590 0.90684 0.94657 1.22511 0.97540 0.92823 0.94589 1.61937 1.23816 1.19204 1.21234 1.22289 0.98859 0.95175 0.91337 1.21411 0.94814 0.96428 0.87606 1.45588 1.52842 1.12715 1.24357 1.18084 0.78882 0.85945 0.81587 1.90719 1.61089 1.16453 1.77906 1.19911 1.07689 0.95448 0.97181 1.23250 0.91339 0.89640 0.96145 1.67815 1.11551 1.38625 1.03000 1.22769 0.92341 0.86918 0.94415 1.20472 1.03276 0.96876 0.94903 1.70517 1.25489 0.98777 1.27908 1.26664 0.89158 1.00232 0.84585 1.43401 1.44634 1.07677 1.23399 0.71682 1.19026 0.99274 0.86367 0.96881 1.22560 0.93210 0.96412 0.96151 1.21444 0.95959 0.92086 0.90653 0.92970 0.91831 0.94493 0.87368 0.95562 0.87355 0.93110 0.92250 0.91212 0.74413 0.78626 0.79027 0.71426 0.95578 0.89084 0.93136 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.57 13.97 21.65 0.30 -60.26 16 2 C -0.04 -2.17 5.24 84.86 0.44 -1.73 16 3 Si 0.95 47.41 24.30 68.60 1.67 49.08 16 4 H -0.28 -13.04 6.58 99.48 0.65 -12.38 16 5 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 6 H -0.26 -12.81 6.61 99.48 0.66 -12.15 16 7 C -0.25 -14.02 10.08 84.03 0.85 -13.17 16 8 H 0.06 3.39 8.05 -2.91 -0.02 3.37 16 9 N -0.62 -29.39 2.82 -698.12 -1.97 -31.36 16 10 C 0.14 5.32 6.69 86.35 0.58 5.90 16 11 C 0.05 1.53 5.58 86.39 0.48 2.01 16 12 N -0.54 -14.70 4.78 -895.24 -4.28 -18.98 16 13 C 0.05 0.93 5.38 86.30 0.46 1.39 16 14 C 0.12 2.38 4.93 86.38 0.43 2.81 16 15 N -0.70 -10.68 5.51 -466.28 -2.57 -13.25 16 16 C 0.57 11.49 7.77 86.70 0.67 12.16 16 17 O -0.58 -15.60 15.52 -3.99 -0.06 -15.66 16 18 C -0.19 -3.40 5.89 -20.02 -0.12 -3.52 16 19 C 0.15 1.99 10.71 84.96 0.91 2.90 16 20 N -0.50 -7.75 10.30 -193.93 -2.00 -9.75 16 21 C 0.20 3.05 11.25 84.99 0.96 4.01 16 22 C -0.03 -0.63 7.27 39.46 0.29 -0.35 16 23 N -0.51 -8.56 11.28 -191.90 -2.17 -10.73 16 24 C 0.28 3.00 12.98 179.97 2.34 5.34 16 25 N -0.58 -8.50 6.02 -190.32 -1.15 -9.64 16 26 H 0.44 5.96 7.92 -92.71 -0.73 5.23 16 27 C 0.11 2.02 6.93 39.50 0.27 2.29 16 28 C 0.05 1.54 5.04 86.39 0.44 1.97 16 29 C 0.12 5.31 4.35 86.35 0.38 5.69 16 30 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 31 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 0.85 8.08 -2.38 -0.02 0.83 16 37 H 0.06 1.41 6.18 -2.39 -0.01 1.39 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 3.34 6.54 -92.71 -0.61 2.73 16 40 H 0.20 1.12 6.42 -2.91 -0.02 1.11 16 41 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.27 -0.14 8.06 -2.91 -0.02 -0.17 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 2.69 5.73 -2.39 -0.01 2.68 16 45 H 0.05 2.40 4.60 -2.39 -0.01 2.39 16 46 H 0.03 1.44 6.94 -2.39 -0.02 1.42 16 Total: -1.00 -80.90 366.55 -3.24 -84.14 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -0.39 Total: 8.72 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 9.37 Total: 27.70 kcal Atomic # 7 Polarization: -140.15 SS G_CDS: -13.82 Total: -153.97 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.06 Total: -15.66 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -80.90 -3.24 -84.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731365470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.575 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds