Wall clock time and date at job start Wed Apr 1 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21750 * 119.99980 * 0.02562 * 16 15 14 18 18 C 1.46197 * 119.99537 * 180.02562 * 16 15 14 19 19 C 1.38727 * 126.75690 * 180.02562 * 18 16 15 20 20 N 1.32282 * 108.17509 * 180.02562 * 19 18 16 21 21 C 1.33136 * 109.71720 * 359.97438 * 20 19 18 22 22 C 1.40619 * 132.29358 * 180.02562 * 21 20 19 23 23 C 1.36308 * 119.22975 * 179.97438 * 22 21 20 24 24 C 1.39879 * 120.11653 * 359.97438 * 23 22 21 25 25 N 1.30801 * 120.77633 * 0.03349 * 24 23 22 26 26 N 1.36653 * 108.62619 * 359.73316 * 21 20 19 27 27 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 28 28 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 31 31 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 32 32 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 33 33 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 34 34 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 35 35 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 36 36 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 37 37 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 38 38 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 39 39 H 1.07998 * 125.91746 * 0.02562 * 19 18 16 40 40 H 1.07999 * 120.38465 * 359.94841 * 22 21 20 41 41 H 1.07994 * 119.94408 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.61116 * 180.02562 * 24 23 22 43 43 H 1.09005 * 109.49472 * 303.13919 * 27 12 11 44 44 H 1.09004 * 109.51569 * 183.08280 * 27 12 11 45 45 H 1.09005 * 109.63035 * 350.91919 * 28 9 7 46 46 H 1.08997 * 109.62936 * 111.49710 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2987 -9.4982 -1.8420 18 6 1.9889 -10.2775 -4.0092 19 6 2.4465 -11.5785 -3.8593 20 7 2.3419 -12.1898 -5.0277 21 6 1.8383 -11.3506 -5.9303 22 6 1.5336 -11.5000 -7.2949 23 6 1.0151 -10.4423 -7.9807 24 6 0.7904 -9.2252 -7.3288 25 7 1.0731 -9.0836 -6.0596 26 7 1.6008 -10.1490 -5.3243 27 6 2.0031 -4.6196 -1.0146 28 6 1.8311 -3.6609 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.0842 -1.3450 -1.6646 31 1 -0.6925 -2.6164 -0.6875 32 1 -0.4579 -3.4326 -2.9816 33 1 1.2741 -3.0200 -2.9888 34 1 -0.1815 -5.8898 -3.2160 35 1 1.4638 -5.3601 -3.6412 36 1 2.3908 -6.7992 -1.8472 37 1 0.7456 -7.3290 -1.4221 38 1 1.1555 -7.8213 -4.1725 39 1 2.8229 -12.0165 -2.9467 40 1 1.7088 -12.4416 -7.7939 41 1 0.7772 -10.5440 -9.0292 42 1 0.3789 -8.3926 -7.8800 43 1 2.8147 -4.2687 -1.6521 44 1 2.2379 -5.6172 -0.6432 45 1 2.7856 -3.5347 0.6793 46 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731368600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:13 Heat of formation + Delta-G solvation = 105.168758 kcal Electronic energy + Delta-G solvation = -29168.085116 eV Core-core repulsion = 25095.288593 eV Total energy + Delta-G solvation = -4072.796523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.70532 -40.76431 -39.78287 -39.01503 -36.94657 -35.56892 -34.72565 -33.28918 -32.36819 -31.89676 -31.05322 -29.89971 -27.75546 -25.94784 -25.35608 -24.82407 -24.19370 -23.40784 -22.44120 -21.82793 -20.84121 -19.84068 -18.76664 -18.54755 -17.60922 -17.48830 -17.37429 -16.89129 -16.79284 -16.61564 -16.00563 -15.79315 -15.52188 -15.34222 -15.11847 -15.05948 -14.91545 -14.78731 -14.55364 -14.10290 -13.83770 -13.77086 -13.17670 -13.05503 -13.02387 -12.64009 -12.49652 -12.39119 -12.30769 -12.19827 -12.05713 -11.92563 -11.55220 -11.53183 -11.40229 -11.15823 -10.65719 -10.59974 -10.32041 -9.42326 -9.33656 -8.70265 -7.88743 -5.33605 -0.65576 -0.31840 0.57815 1.12640 1.46518 1.46969 1.56685 1.86220 2.06837 2.21305 2.49946 2.81776 2.97660 3.05040 3.26372 3.61467 3.64337 3.68717 3.81570 3.87639 3.97824 4.14502 4.22739 4.25883 4.30440 4.36561 4.41947 4.53294 4.58535 4.66973 4.78461 4.82127 4.83245 4.86145 4.88783 4.99614 5.13758 5.15457 5.20835 5.32073 5.34971 5.60035 5.67610 6.08770 6.14772 6.22150 6.32756 6.36191 6.47378 6.94953 7.12205 7.82087 8.36623 9.18205 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.001954 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.317519 B =14325.381375 C =15098.229217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.184 3.816 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.056 3.944 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.596 3.404 17 O -0.564 6.564 18 C -0.098 4.098 19 C 0.106 3.894 20 N -0.494 5.494 21 C 0.182 3.818 22 C -0.028 4.028 23 C -0.136 4.136 24 C 0.152 3.848 25 N -0.308 5.308 26 N -0.263 5.263 27 C 0.047 3.953 28 C 0.143 3.857 29 H 0.251 0.749 30 H 0.060 0.940 31 H -0.001 1.001 32 H 0.088 0.912 33 H 0.024 0.976 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.212 0.788 40 H 0.192 0.808 41 H 0.213 0.787 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -23.517 -23.774 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.058 3.942 11 C -0.076 4.076 12 N -0.263 5.263 13 C -0.072 4.072 14 C 0.000 4.000 15 N -0.364 5.364 16 C 0.383 3.617 17 O -0.443 6.443 18 C -0.217 4.217 19 C -0.056 4.056 20 N -0.214 5.214 21 C -0.064 4.064 22 C -0.055 4.055 23 C -0.162 4.162 24 C -0.038 4.038 25 N -0.120 5.120 26 N -0.033 5.033 27 C -0.082 4.082 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.253 0.747 39 H 0.228 0.772 40 H 0.209 0.791 41 H 0.230 0.770 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.264 -23.621 -22.050 32.314 hybrid contribution 0.599 1.547 -0.629 1.774 sum 0.863 -22.074 -22.679 31.660 Atomic orbital electron populations 1.70190 1.06596 1.25917 1.55408 1.25809 0.96142 1.01504 1.01265 0.85223 0.77979 0.79349 0.77618 1.20994 1.22063 1.19516 1.19532 0.92871 0.85950 1.41090 0.91594 1.44422 1.34282 1.02063 1.53101 1.20650 0.87801 0.96514 0.89267 1.22603 0.99823 0.88496 0.96673 1.61930 1.34232 1.05687 1.24479 1.22187 1.01875 0.90029 0.93116 1.21432 1.01539 0.86604 0.90456 1.45846 1.64479 1.10953 1.15092 1.16721 0.77380 0.81491 0.86111 1.90862 1.50734 1.81190 1.21534 1.21127 1.18354 0.99622 0.82575 1.23458 0.96736 0.87977 0.97443 1.70506 1.20410 1.30342 1.00143 1.22085 1.03742 0.83076 0.97513 1.21207 0.94263 1.03374 0.86649 1.22233 0.98510 0.90663 1.04755 1.25258 0.89414 1.01042 0.88119 1.75610 1.16608 1.08844 1.10948 1.46962 1.38578 1.09482 1.08260 1.22607 0.89860 0.99905 0.95835 1.21120 0.97467 0.85632 0.94018 0.93986 0.92157 0.98245 0.89411 0.95789 0.88824 0.93775 0.91462 0.91164 0.74746 0.77161 0.79055 0.77009 0.73218 0.95599 0.88980 0.92233 0.96589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 11.15 21.65 0.24 -55.72 16 2 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 3 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.26 -14.92 9.63 84.03 0.81 -14.11 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -32.14 3.04 -698.15 -2.12 -34.26 16 10 C 0.18 9.10 5.42 86.35 0.47 9.56 16 11 C 0.05 2.01 5.58 86.38 0.48 2.49 16 12 N -0.54 -18.50 4.78 -895.27 -4.28 -22.78 16 13 C 0.06 1.45 5.38 86.30 0.46 1.92 16 14 C 0.12 3.30 4.93 86.38 0.43 3.72 16 15 N -0.71 -17.70 5.55 -467.53 -2.60 -20.29 16 16 C 0.60 17.02 7.77 86.31 0.67 17.69 16 17 O -0.56 -19.51 16.91 -4.51 -0.08 -19.59 16 18 C -0.10 -2.44 7.10 40.40 0.29 -2.16 16 19 C 0.11 2.44 11.69 84.74 0.99 3.43 16 20 N -0.49 -10.90 11.25 -192.62 -2.17 -13.07 16 21 C 0.18 3.21 7.85 133.99 1.05 4.27 16 22 C -0.03 -0.18 10.11 22.40 0.23 0.05 16 23 C -0.14 0.05 10.03 22.22 0.22 0.28 16 24 C 0.15 0.42 11.30 85.24 0.96 1.39 16 25 N -0.31 -4.24 10.04 -57.04 -0.57 -4.81 16 26 N -0.26 -5.24 4.05 -181.37 -0.74 -5.98 16 27 C 0.05 1.69 5.04 86.38 0.44 2.13 16 28 C 0.14 6.32 6.69 86.35 0.58 6.90 16 29 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 30 H 0.06 3.31 6.12 -2.39 -0.01 3.30 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.09 2.85 8.11 -2.38 -0.02 2.83 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.09 8.08 -2.39 -0.02 1.07 16 36 H 0.07 1.93 6.18 -2.39 -0.01 1.92 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.41 8.82 6.47 -92.71 -0.60 8.22 16 39 H 0.21 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.21 -2.16 8.06 -2.91 -0.02 -2.18 16 42 H 0.25 -1.80 8.06 -2.91 -0.02 -1.82 16 43 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.09 2.92 5.73 -2.38 -0.01 2.91 16 45 H 0.06 2.53 7.95 -2.38 -0.02 2.51 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -82.50 377.04 -1.36 -83.87 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.42 Total: 10.23 kcal Atomic # 6 Polarization: 26.54 SS G_CDS: 8.49 Total: 35.03 kcal Atomic # 7 Polarization: -144.68 SS G_CDS: -12.23 Total: -156.90 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.08 Total: -19.59 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -82.50 -1.36 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731368600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.034 kcal (2) G-P(sol) polarization free energy of solvation -82.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds