Wall clock time and date at job start Wed Apr 1 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47081 * 269.99877 * 3 2 1 5 5 H 1.48503 * 109.47165 * 29.99837 * 3 2 1 6 6 H 1.48500 * 109.47310 * 149.99857 * 3 2 1 7 7 C 1.38817 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99968 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99867 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47190 * 174.85609 * 11 10 9 13 13 H 1.09002 * 109.58919 * 300.18581 * 12 11 10 14 14 C 1.53196 * 109.70260 * 60.53971 * 12 11 10 15 15 C 1.53038 * 109.31482 * 174.49187 * 14 12 11 16 16 C 1.53079 * 109.66058 * 298.70263 * 15 14 12 17 17 C 1.53195 * 109.29465 * 61.14908 * 16 15 14 18 18 N 1.46922 * 108.89382 * 305.58242 * 17 16 15 19 19 C 1.34777 * 120.62923 * 233.55634 * 18 17 16 20 20 O 1.21627 * 119.99934 * 174.91971 * 19 18 17 21 21 C 1.47314 * 120.00116 * 354.92053 * 19 18 17 22 22 C 1.39004 * 120.90804 * 321.67041 * 21 19 18 23 23 C 1.39711 * 119.29538 * 179.97438 * 22 21 19 24 24 C 1.35260 * 121.08180 * 0.02562 * 23 22 21 25 25 N 1.35711 * 121.57044 * 359.97438 * 24 23 22 26 26 N 1.40210 * 134.09067 * 179.97438 * 25 24 23 27 27 N 1.29015 * 106.96702 * 180.02562 * 26 25 24 28 28 N 1.28599 * 110.78232 * 0.02562 * 27 26 25 29 29 C 1.32045 * 110.21749 * 359.71522 * 28 27 26 30 30 H 0.97006 * 120.00283 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00080 * 359.97438 * 9 7 2 32 32 H 1.08990 * 109.47061 * 59.99772 * 10 9 7 33 33 H 1.09002 * 109.46861 * 299.99226 * 10 9 7 34 34 H 1.09008 * 109.47215 * 54.85982 * 11 10 9 35 35 H 1.09001 * 109.47327 * 294.86010 * 11 10 9 36 36 H 1.08994 * 109.49862 * 294.44780 * 14 12 11 37 37 H 1.09001 * 109.49688 * 54.54275 * 14 12 11 38 38 H 1.09002 * 109.46323 * 58.65328 * 15 14 12 39 39 H 1.09004 * 109.46031 * 178.61733 * 15 14 12 40 40 H 1.09007 * 109.38965 * 301.27793 * 16 15 14 41 41 H 1.08992 * 109.62355 * 181.17124 * 16 15 14 42 42 H 1.08998 * 109.58863 * 185.72275 * 17 16 15 43 43 H 1.08999 * 109.58140 * 65.44168 * 17 16 15 44 44 H 1.08003 * 120.34988 * 0.02562 * 22 21 19 45 45 H 1.08004 * 119.46288 * 180.02562 * 23 22 21 46 46 H 1.07995 * 119.21683 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1912 0.0000 12 6 6.3803 -3.5104 0.1293 13 1 6.1010 -4.0048 1.0597 14 6 6.0444 -4.4202 -1.0565 15 6 6.9144 -5.6776 -0.9923 16 6 8.3916 -5.2871 -1.0864 17 6 8.7529 -4.3842 0.0973 18 7 7.8255 -3.2451 0.1272 19 6 8.2915 -1.9807 0.1518 20 8 7.5167 -1.0456 0.0832 21 6 9.7391 -1.7312 0.2619 22 6 10.5409 -2.5256 1.0732 23 6 11.9101 -2.2593 1.1522 24 6 12.4652 -1.2428 0.4534 25 7 11.7198 -0.4428 -0.3504 26 7 12.0088 0.6560 -1.1719 27 7 10.8962 1.0273 -1.7092 28 7 9.9271 0.2795 -1.3150 29 6 10.3729 -0.6447 -0.4838 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3620 0.0004 32 1 3.8491 -3.0421 -0.8901 33 1 3.8485 -3.0425 0.8898 34 1 5.8655 -1.5432 0.8404 35 1 5.8946 -1.7000 -0.9324 36 1 4.9927 -4.7029 -1.0117 37 1 6.2396 -3.8900 -1.9887 38 1 6.7370 -6.1942 -0.0491 39 1 6.6600 -6.3380 -1.8214 40 1 8.5654 -4.7508 -2.0194 41 1 9.0097 -6.1844 -1.0615 42 1 9.7741 -4.0210 -0.0185 43 1 8.6688 -4.9484 1.0261 44 1 10.1101 -3.3406 1.6360 45 1 12.5357 -2.8751 1.7814 46 1 13.5269 -1.0636 0.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732508577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:32 Heat of formation + Delta-G solvation = 158.195104 kcal Electronic energy + Delta-G solvation = -30480.525691 eV Core-core repulsion = 26410.028562 eV Total energy + Delta-G solvation = -4070.497128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.74775 -40.96102 -39.01043 -37.58509 -35.57280 -34.52003 -33.09746 -32.81569 -32.47258 -31.09763 -30.64233 -28.27983 -26.32995 -25.03803 -24.78102 -24.25472 -23.55770 -22.09379 -21.31548 -20.79650 -19.87724 -19.05613 -18.11256 -17.51569 -17.25492 -16.96669 -16.45542 -16.11969 -15.55446 -14.93584 -14.76324 -14.68244 -14.24320 -14.15202 -13.71604 -13.61061 -13.52820 -13.43326 -13.18608 -12.97998 -12.85705 -12.74470 -12.66017 -12.26391 -11.93278 -11.60245 -11.45137 -11.32380 -11.25362 -11.07969 -10.89462 -10.84523 -10.62937 -10.46243 -10.35844 -10.01394 -9.46818 -9.19100 -9.02685 -8.78198 -8.67478 -7.07295 -5.64841 -2.98566 -0.49676 -0.00294 1.16279 1.74134 2.10243 2.46598 2.83002 3.09791 3.41774 3.53301 3.59134 3.61558 3.79940 3.86609 4.12592 4.33704 4.50245 4.55527 4.62221 4.74154 4.77045 4.81567 4.86401 4.96530 5.01235 5.03313 5.08755 5.16910 5.31311 5.38836 5.46437 5.61392 5.63967 5.67591 5.78685 5.81949 5.86479 5.98272 6.09630 6.14542 6.27198 6.38004 6.54141 6.96709 7.01588 7.13617 7.93794 8.00369 8.12612 8.55267 9.36117 10.09565 10.30704 11.53723 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.003400 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.075011 B = 8233.160066 C =10254.407110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.003 3.997 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.156 3.844 13 H 0.079 0.921 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.136 4.136 17 C 0.093 3.907 18 N -0.600 5.600 19 C 0.558 3.442 20 O -0.479 6.479 21 C -0.090 4.090 22 C -0.031 4.031 23 C -0.144 4.144 24 C 0.125 3.875 25 N -0.309 5.309 26 N -0.107 5.107 27 N -0.004 5.004 28 N -0.293 5.293 29 C 0.270 3.730 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.175 0.825 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.406 -15.860 3.956 36.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.193 4.193 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.025 3.975 11 C -0.159 4.159 12 C 0.054 3.946 13 H 0.097 0.903 14 C -0.174 4.174 15 C -0.158 4.158 16 C -0.174 4.174 17 C -0.030 4.030 18 N -0.335 5.335 19 C 0.344 3.656 20 O -0.352 6.352 21 C -0.099 4.099 22 C -0.056 4.056 23 C -0.168 4.168 24 C -0.002 4.002 25 N -0.089 5.089 26 N -0.089 5.089 27 N 0.003 4.997 28 N -0.150 5.150 29 C 0.011 3.989 30 H 0.068 0.932 31 H 0.196 0.804 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.186 0.814 45 H 0.192 0.808 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 31.864 -14.073 2.872 34.952 hybrid contribution 0.869 0.465 0.590 1.149 sum 32.733 -13.607 3.462 35.618 Atomic orbital electron populations 1.69708 1.05106 1.25731 1.58092 1.24646 0.95228 0.97224 1.02161 0.86562 0.79355 0.84799 0.78032 1.20999 1.21855 1.20027 1.19068 0.80769 0.94627 1.42559 0.89340 1.42710 1.03912 1.02502 1.90942 1.20757 0.89446 0.89317 0.97970 1.22328 0.94282 0.94411 1.04911 1.21391 0.77060 0.97582 0.98542 0.90345 1.22085 1.00903 0.95579 0.98793 1.21545 0.94088 0.97787 1.02366 1.21936 0.97627 0.99351 0.98479 1.22168 0.93514 0.87770 0.99511 1.48016 1.07712 1.04481 1.73250 1.17519 0.85845 0.83649 0.78632 1.91062 1.55089 1.42915 1.46172 1.20440 0.95693 0.94004 0.99789 1.22159 0.93009 0.96442 0.94006 1.21021 0.95725 0.98391 1.01633 1.21783 0.98856 0.89639 0.89955 1.49013 1.08272 1.21861 1.29749 1.82827 1.18154 0.99113 1.08843 1.78079 0.92764 1.15981 1.12876 1.75290 1.21033 1.04472 1.14197 1.23636 0.81990 0.96647 0.96583 0.93193 0.80379 0.95783 0.96183 0.89703 0.90512 0.89506 0.91203 0.91630 0.91505 0.91437 0.90627 0.89651 0.90553 0.81436 0.80756 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.84 13.97 55.49 0.78 -30.06 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 24.10 27.74 -169.99 -4.71 19.39 16 4 H -0.28 -7.73 7.11 56.52 0.40 -7.33 16 5 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.27 -7.29 6.52 56.52 0.37 -6.92 16 7 C -0.24 -7.24 10.47 -15.06 -0.16 -7.40 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 9 N -0.76 -19.73 5.41 -59.91 -0.32 -20.06 16 10 C 0.15 3.14 5.78 -4.04 -0.02 3.11 16 11 C -0.12 -2.11 3.25 -26.73 -0.09 -2.19 16 12 C 0.16 1.90 3.00 -67.60 -0.20 1.69 16 13 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.14 -1.46 4.88 -26.61 -0.13 -1.59 16 15 C -0.12 -0.89 5.88 -26.67 -0.16 -1.04 16 16 C -0.14 -0.80 6.09 -26.59 -0.16 -0.96 16 17 C 0.09 0.51 4.88 -3.71 -0.02 0.49 16 18 N -0.60 -6.07 2.97 -166.52 -0.50 -6.57 16 19 C 0.56 7.19 7.31 -12.57 -0.09 7.10 16 20 O -0.48 -8.62 12.36 5.25 0.06 -8.56 16 21 C -0.09 -0.88 5.37 -102.71 -0.55 -1.43 16 22 C -0.03 -0.13 7.48 -38.75 -0.29 -0.42 16 23 C -0.14 -0.25 9.92 -40.09 -0.40 -0.65 16 24 C 0.12 0.52 11.15 -16.90 -0.19 0.33 16 25 N -0.31 -3.07 3.94 -10.99 -0.04 -3.11 16 26 N -0.11 -1.38 13.99 60.35 0.84 -0.53 16 27 N 0.00 -0.06 13.36 60.35 0.81 0.74 16 28 N -0.29 -4.85 12.24 32.20 0.39 -4.45 16 29 C 0.27 3.42 7.92 -154.51 -1.22 2.20 16 30 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 31 H 0.36 9.62 5.53 -40.82 -0.23 9.40 16 32 H 0.02 0.49 6.88 -51.93 -0.36 0.13 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 1.64 6.45 -51.92 -0.33 1.30 16 35 H 0.08 1.49 7.03 -51.93 -0.36 1.13 16 36 H 0.09 0.99 6.90 -51.93 -0.36 0.63 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.31 4.57 -51.93 -0.24 0.08 16 43 H 0.08 0.25 8.11 -51.93 -0.42 -0.17 16 44 H 0.17 0.22 6.39 -52.48 -0.34 -0.11 16 45 H 0.18 -0.46 8.06 -52.48 -0.42 -0.88 16 46 H 0.18 0.09 8.06 -52.49 -0.42 -0.34 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -41.14 366.92 -6.97 -48.11 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.03 Total: 0.34 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.78 Total: -0.77 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 1.96 Total: -64.05 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.71 Total: 19.39 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -41.14 -6.97 -48.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732508577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.307 kcal (2) G-P(sol) polarization free energy of solvation -41.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds