Wall clock time and date at job start Wed Apr 1 2020 04:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47081 * 269.99877 * 3 2 1 5 5 H 1.48503 * 109.47165 * 29.99837 * 3 2 1 6 6 H 1.48500 * 109.47310 * 149.99857 * 3 2 1 7 7 C 1.38817 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99968 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99867 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46949 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47190 * 174.85609 * 11 10 9 13 13 H 1.09002 * 109.58919 * 300.18581 * 12 11 10 14 14 C 1.53196 * 109.70260 * 60.53971 * 12 11 10 15 15 C 1.53038 * 109.31482 * 174.49187 * 14 12 11 16 16 C 1.53079 * 109.66058 * 298.70263 * 15 14 12 17 17 C 1.53195 * 109.29465 * 61.14908 * 16 15 14 18 18 N 1.46922 * 108.89382 * 305.58242 * 17 16 15 19 19 C 1.34777 * 120.62923 * 233.55634 * 18 17 16 20 20 O 1.21627 * 119.99934 * 174.91971 * 19 18 17 21 21 C 1.47314 * 120.00116 * 354.92053 * 19 18 17 22 22 C 1.39004 * 120.90804 * 321.67041 * 21 19 18 23 23 C 1.39711 * 119.29538 * 179.97438 * 22 21 19 24 24 C 1.35260 * 121.08180 * 0.02562 * 23 22 21 25 25 N 1.35711 * 121.57044 * 359.97438 * 24 23 22 26 26 N 1.40210 * 134.09067 * 179.97438 * 25 24 23 27 27 N 1.29015 * 106.96702 * 180.02562 * 26 25 24 28 28 N 1.28599 * 110.78232 * 0.02562 * 27 26 25 29 29 C 1.32045 * 110.21749 * 359.71522 * 28 27 26 30 30 H 0.97006 * 120.00283 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00080 * 359.97438 * 9 7 2 32 32 H 1.08990 * 109.47061 * 59.99772 * 10 9 7 33 33 H 1.09002 * 109.46861 * 299.99226 * 10 9 7 34 34 H 1.09008 * 109.47215 * 54.85982 * 11 10 9 35 35 H 1.09001 * 109.47327 * 294.86010 * 11 10 9 36 36 H 1.08994 * 109.49862 * 294.44780 * 14 12 11 37 37 H 1.09001 * 109.49688 * 54.54275 * 14 12 11 38 38 H 1.09002 * 109.46323 * 58.65328 * 15 14 12 39 39 H 1.09004 * 109.46031 * 178.61733 * 15 14 12 40 40 H 1.09007 * 109.38965 * 301.27793 * 16 15 14 41 41 H 1.08992 * 109.62355 * 181.17124 * 16 15 14 42 42 H 1.08998 * 109.58863 * 185.72275 * 17 16 15 43 43 H 1.08999 * 109.58140 * 65.44168 * 17 16 15 44 44 H 1.08003 * 120.34988 * 0.02562 * 22 21 19 45 45 H 1.08004 * 119.46288 * 180.02562 * 23 22 21 46 46 H 1.07995 * 119.21683 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1912 0.0000 12 6 6.3803 -3.5104 0.1293 13 1 6.1010 -4.0048 1.0597 14 6 6.0444 -4.4202 -1.0565 15 6 6.9144 -5.6776 -0.9923 16 6 8.3916 -5.2871 -1.0864 17 6 8.7529 -4.3842 0.0973 18 7 7.8255 -3.2451 0.1272 19 6 8.2915 -1.9807 0.1518 20 8 7.5167 -1.0456 0.0832 21 6 9.7391 -1.7312 0.2619 22 6 10.5409 -2.5256 1.0732 23 6 11.9101 -2.2593 1.1522 24 6 12.4652 -1.2428 0.4534 25 7 11.7198 -0.4428 -0.3504 26 7 12.0088 0.6560 -1.1719 27 7 10.8962 1.0273 -1.7092 28 7 9.9271 0.2795 -1.3150 29 6 10.3729 -0.6447 -0.4838 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3620 0.0004 32 1 3.8491 -3.0421 -0.8901 33 1 3.8485 -3.0425 0.8898 34 1 5.8655 -1.5432 0.8404 35 1 5.8946 -1.7000 -0.9324 36 1 4.9927 -4.7029 -1.0117 37 1 6.2396 -3.8900 -1.9887 38 1 6.7370 -6.1942 -0.0491 39 1 6.6600 -6.3380 -1.8214 40 1 8.5654 -4.7508 -2.0194 41 1 9.0097 -6.1844 -1.0615 42 1 9.7741 -4.0210 -0.0185 43 1 8.6688 -4.9484 1.0261 44 1 10.1101 -3.3406 1.6360 45 1 12.5357 -2.8751 1.7814 46 1 13.5269 -1.0636 0.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732508577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:31 Heat of formation + Delta-G solvation = 125.990366 kcal Electronic energy + Delta-G solvation = -30481.922193 eV Core-core repulsion = 26410.028562 eV Total energy + Delta-G solvation = -4071.893631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.53353 -41.80710 -39.63937 -38.46109 -37.18542 -35.53529 -34.34544 -33.84908 -33.15158 -32.83878 -31.44916 -29.57504 -27.23377 -25.91397 -25.59595 -25.15570 -24.67322 -23.57246 -22.28198 -22.00139 -20.57769 -19.90938 -19.62749 -18.64199 -18.08221 -17.75932 -17.17422 -16.81691 -16.62458 -16.38393 -15.92047 -15.73105 -15.42083 -15.00090 -14.90408 -14.81397 -14.46795 -14.34680 -14.22374 -14.03978 -13.90172 -13.70433 -13.63412 -13.34511 -13.05244 -12.83242 -12.76849 -12.71017 -12.24623 -12.21292 -12.14610 -11.91538 -11.88230 -11.81955 -11.58060 -11.43288 -11.14521 -11.00152 -10.25318 -9.77817 -9.53863 -9.31791 -8.08207 -5.39419 -1.02635 -0.62184 0.55133 0.92097 1.32074 1.34243 1.42228 1.43445 1.73165 2.12730 2.42540 2.46744 2.77152 3.23478 3.23910 3.54134 3.58159 3.68605 3.82758 3.89790 3.97960 4.00335 4.11174 4.18670 4.26927 4.32735 4.38041 4.48851 4.52636 4.54231 4.70190 4.71254 4.75034 4.80983 4.92442 4.95768 4.99856 5.12772 5.19919 5.27948 5.35976 5.38307 5.40244 5.52836 5.66442 5.71296 6.17803 6.32260 7.03024 7.08435 7.12760 7.81954 7.99976 9.13406 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.003400 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.075011 B = 8233.160066 C =10254.407110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.945 3.055 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.066 0.934 9 N -0.764 5.764 10 C 0.150 3.850 11 C -0.101 4.101 12 C 0.162 3.838 13 H 0.102 0.898 14 C -0.135 4.135 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.085 3.915 18 N -0.593 5.593 19 C 0.552 3.448 20 O -0.551 6.551 21 C -0.132 4.132 22 C 0.014 3.986 23 C -0.108 4.108 24 C 0.113 3.887 25 N -0.303 5.303 26 N -0.122 5.122 27 N -0.041 5.041 28 N -0.359 5.359 29 C 0.250 3.750 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.212 0.788 45 H 0.243 0.757 46 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.222 -19.855 6.901 42.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.249 4.249 3 Si 0.773 3.227 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.084 0.916 9 N -0.409 5.409 10 C 0.023 3.977 11 C -0.139 4.139 12 C 0.059 3.941 13 H 0.120 0.880 14 C -0.173 4.173 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.035 4.035 18 N -0.326 5.326 19 C 0.339 3.661 20 O -0.429 6.429 21 C -0.142 4.142 22 C -0.011 4.011 23 C -0.130 4.130 24 C -0.012 4.012 25 N -0.083 5.083 26 N -0.105 5.105 27 N -0.034 5.034 28 N -0.218 5.218 29 C -0.007 4.007 30 H 0.068 0.932 31 H 0.193 0.807 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.228 0.772 45 H 0.259 0.741 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 36.756 -18.150 5.822 41.405 hybrid contribution -0.482 1.415 -0.204 1.509 sum 36.275 -16.735 5.618 40.342 Atomic orbital electron populations 1.69843 1.06609 1.26593 1.59976 1.25344 0.96048 1.00563 1.02929 0.85554 0.78334 0.80787 0.77984 1.20959 1.21165 1.19261 1.19115 0.82503 0.93737 1.40852 0.91631 1.42874 1.02768 1.04445 1.90836 1.20992 0.91302 0.87106 0.98259 1.22024 0.92421 0.96996 1.02430 1.21209 0.78258 0.94547 1.00083 0.88028 1.22045 1.01303 0.97046 0.96907 1.21535 0.94392 0.95633 1.03693 1.21960 0.96930 1.00616 0.97667 1.22657 0.93357 0.86193 1.01304 1.48088 1.07356 1.05210 1.71947 1.18062 0.87081 0.83545 0.77389 1.91020 1.57264 1.45019 1.49643 1.20222 0.94505 0.96015 1.03458 1.22860 0.93621 0.94647 0.89964 1.21886 0.94834 0.96746 0.99570 1.23036 1.00737 0.88992 0.88479 1.49118 1.07876 1.21519 1.29798 1.82582 1.17559 1.00585 1.09815 1.77980 0.93426 1.17377 1.14574 1.75083 1.22746 1.06807 1.17126 1.23842 0.83250 0.96850 0.96727 0.93193 0.80746 0.95512 0.95048 0.91743 0.93728 0.90673 0.93895 0.89460 0.91176 0.93765 0.86967 0.87362 0.86315 0.77162 0.74073 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.20 13.97 21.65 0.30 -65.90 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.95 51.54 27.74 68.60 1.90 53.45 16 4 H -0.28 -15.33 7.11 99.48 0.71 -14.62 16 5 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 6 H -0.27 -14.11 6.52 99.48 0.65 -13.46 16 7 C -0.23 -14.40 10.47 84.03 0.88 -13.51 16 8 H 0.07 4.31 8.06 -2.91 -0.02 4.29 16 9 N -0.76 -41.33 5.41 -343.47 -1.86 -43.18 16 10 C 0.15 6.35 5.78 86.38 0.50 6.85 16 11 C -0.10 -3.67 3.25 30.59 0.10 -3.57 16 12 C 0.16 3.80 3.00 44.97 0.14 3.94 16 13 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.13 -2.85 4.88 30.67 0.15 -2.70 16 15 C -0.12 -1.33 5.88 30.63 0.18 -1.15 16 16 C -0.13 -1.01 6.09 30.69 0.19 -0.82 16 17 C 0.09 0.48 4.88 86.36 0.42 0.90 16 18 N -0.59 -10.86 2.97 -798.99 -2.38 -13.24 16 19 C 0.55 14.26 7.31 86.63 0.63 14.90 16 20 O -0.55 -21.45 12.36 -4.12 -0.05 -21.50 16 21 C -0.13 -2.36 5.37 -18.63 -0.10 -2.46 16 22 C 0.01 0.03 7.48 22.81 0.17 0.20 16 23 C -0.11 0.47 9.92 21.94 0.22 0.69 16 24 C 0.11 0.37 11.15 83.41 0.93 1.30 16 25 N -0.30 -5.67 3.94 -188.68 -0.74 -6.41 16 26 N -0.12 -3.29 13.99 37.02 0.52 -2.77 16 27 N -0.04 -1.41 13.36 37.02 0.49 -0.92 16 28 N -0.36 -13.06 12.24 -52.04 -0.64 -13.70 16 29 C 0.25 6.48 7.92 135.75 1.07 7.55 16 30 H 0.26 16.64 8.31 -92.70 -0.77 15.87 16 31 H 0.36 19.78 5.53 -92.71 -0.51 19.27 16 32 H 0.03 1.13 6.88 -2.39 -0.02 1.11 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 2.63 6.45 -2.38 -0.02 2.62 16 35 H 0.04 1.90 7.03 -2.39 -0.02 1.88 16 36 H 0.07 1.73 6.90 -2.39 -0.02 1.71 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.11 0.10 4.57 -2.39 -0.01 0.09 16 43 H 0.12 -0.19 8.11 -2.39 -0.02 -0.21 16 44 H 0.21 -1.30 6.39 -2.91 -0.02 -1.32 16 45 H 0.24 -4.03 8.06 -2.91 -0.02 -4.06 16 46 H 0.23 -1.21 8.06 -2.91 -0.02 -1.24 16 Total: -1.00 -105.35 366.92 3.95 -101.39 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.46 Total: 3.87 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.94 Total: 8.92 kcal Atomic # 7 Polarization: -141.82 SS G_CDS: -4.30 Total: -146.12 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 1.90 Total: 53.45 kcal Total: -105.35 3.95 -101.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732508577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.384 kcal (2) G-P(sol) polarization free energy of solvation -105.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds